Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12443:12442
Extra
PDB:
ATOM 1 O3' G A2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 2 P A A2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A A2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A A2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A A2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A A2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A A2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A A2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A A2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A A2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A A2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A A2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A A2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A A2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A A2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A A2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A A2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A A2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A A2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A A2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A A2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A A2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A A2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A A2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A A2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A A2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A A2444 7.758 -57.742 41.083 1.00 50.88 O
TER
ATOM 1 O3' A B2441 12.733 -58.037 33.495 1.00 56.27 O
ATOM 2 P G B2442 12.742 -56.457 33.807 1.00 54.41 P
ATOM 3 OP1 G B2442 14.173 -55.982 33.691 1.00 54.10 O
ATOM 4 OP2 G B2442 12.004 -56.254 35.102 1.00 54.16 O
ATOM 5 O5' G B2442 11.881 -55.886 32.607 1.00 54.66 O
ATOM 6 C5' G B2442 10.970 -54.856 32.828 1.00 54.44 C
ATOM 7 C4' G B2442 9.948 -54.777 31.742 1.00 54.85 C
ATOM 8 O4' G B2442 10.278 -55.638 30.633 1.00 55.33 O
ATOM 9 C3' G B2442 8.566 -55.210 32.118 1.00 55.10 C
ATOM 10 O3' G B2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 11 C2' G B2442 7.906 -55.412 30.763 1.00 55.62 C
ATOM 12 O2' G B2442 7.445 -54.168 30.269 1.00 55.46 O
ATOM 13 C1' G B2442 9.088 -55.869 29.893 1.00 55.79 C
ATOM 14 N9 G B2442 9.023 -57.289 29.493 1.00 56.33 N
ATOM 15 C8 G B2442 9.088 -57.699 28.188 1.00 56.80 C
ATOM 16 N7 G B2442 9.074 -59.004 28.009 1.00 57.26 N
ATOM 17 C5 G B2442 9.026 -59.502 29.304 1.00 57.07 C
ATOM 18 C6 G B2442 9.000 -60.848 29.745 1.00 57.39 C
ATOM 19 O6 G B2442 9.004 -61.886 29.084 1.00 57.91 O
ATOM 20 N1 G B2442 8.956 -60.922 31.117 1.00 57.06 N
ATOM 21 C2 G B2442 8.946 -59.826 31.952 1.00 56.49 C
ATOM 22 N2 G B2442 8.914 -60.081 33.274 1.00 56.25 N
ATOM 23 N3 G B2442 8.957 -58.559 31.552 1.00 56.19 N
ATOM 24 C4 G B2442 8.994 -58.460 30.221 1.00 56.50 C
ATOM 25 P A B2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 26 OP1 A B2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 27 OP2 A B2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 28 O5' A B2443 7.618 -55.972 34.671 1.00 55.82 O
TER
ATOM 2 P A A2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 3 OP1 A A2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 4 OP2 A A2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 5 O5' A A2443 7.618 -55.972 34.671 1.00 55.82 O
ATOM 6 C5' A A2443 7.851 -56.047 36.070 1.00 55.47 C
ATOM 7 C4' A A2443 7.476 -57.394 36.620 1.00 55.81 C
ATOM 8 O4' A A2443 8.206 -58.438 35.946 1.00 56.17 O
ATOM 9 C3' A A2443 7.782 -57.620 38.074 1.00 55.51 C
ATOM 10 O3' A A2443 6.803 -57.058 38.898 1.00 55.33 O
ATOM 11 C2' A A2443 7.819 -59.129 38.173 1.00 55.95 C
ATOM 12 O2' A A2443 6.498 -59.631 38.307 1.00 56.30 O
ATOM 13 C1' A A2443 8.361 -59.532 36.801 1.00 56.29 C
ATOM 14 N9 A A2443 9.783 -59.899 36.834 1.00 56.18 N
ATOM 15 C8 A A2443 10.868 -59.144 36.435 1.00 55.87 C
ATOM 16 N7 A A2443 12.035 -59.734 36.567 1.00 55.85 N
ATOM 17 C5 A A2443 11.709 -60.978 37.069 1.00 56.19 C
ATOM 18 C6 A A2443 12.498 -62.081 37.412 1.00 56.37 C
ATOM 19 N6 A A2443 13.821 -62.119 37.310 1.00 56.22 N
ATOM 20 N1 A A2443 11.874 -63.182 37.870 1.00 56.73 N
ATOM 21 C2 A A2443 10.528 -63.139 37.975 1.00 56.88 C
ATOM 22 N3 A A2443 9.661 -62.162 37.701 1.00 56.75 N
ATOM 23 C4 A A2443 10.328 -61.092 37.243 1.00 56.39 C
ATOM 24 P A A2444 7.180 -56.478 40.327 1.00 50.75 P
ATOM 25 OP1 A A2444 5.922 -56.034 40.971 1.00 50.70 O
ATOM 26 OP2 A A2444 8.288 -55.483 40.121 1.00 50.32 O
ATOM 27 O5' A A2444 7.758 -57.742 41.083 1.00 50.88 O
TER
ATOM 1 O3' A B2441 12.733 -58.037 33.495 1.00 56.27 O
ATOM 2 P G B2442 12.742 -56.457 33.807 1.00 54.41 P
ATOM 3 OP1 G B2442 14.173 -55.982 33.691 1.00 54.10 O
ATOM 4 OP2 G B2442 12.004 -56.254 35.102 1.00 54.16 O
ATOM 5 O5' G B2442 11.881 -55.886 32.607 1.00 54.66 O
ATOM 6 C5' G B2442 10.970 -54.856 32.828 1.00 54.44 C
ATOM 7 C4' G B2442 9.948 -54.777 31.742 1.00 54.85 C
ATOM 8 O4' G B2442 10.278 -55.638 30.633 1.00 55.33 O
ATOM 9 C3' G B2442 8.566 -55.210 32.118 1.00 55.10 C
ATOM 10 O3' G B2442 7.931 -54.247 32.896 1.00 54.73 O
ATOM 11 C2' G B2442 7.906 -55.412 30.763 1.00 55.62 C
ATOM 12 O2' G B2442 7.445 -54.168 30.269 1.00 55.46 O
ATOM 13 C1' G B2442 9.088 -55.869 29.893 1.00 55.79 C
ATOM 14 N9 G B2442 9.023 -57.289 29.493 1.00 56.33 N
ATOM 15 C8 G B2442 9.088 -57.699 28.188 1.00 56.80 C
ATOM 16 N7 G B2442 9.074 -59.004 28.009 1.00 57.26 N
ATOM 17 C5 G B2442 9.026 -59.502 29.304 1.00 57.07 C
ATOM 18 C6 G B2442 9.000 -60.848 29.745 1.00 57.39 C
ATOM 19 O6 G B2442 9.004 -61.886 29.084 1.00 57.91 O
ATOM 20 N1 G B2442 8.956 -60.922 31.117 1.00 57.06 N
ATOM 21 C2 G B2442 8.946 -59.826 31.952 1.00 56.49 C
ATOM 22 N2 G B2442 8.914 -60.081 33.274 1.00 56.25 N
ATOM 23 N3 G B2442 8.957 -58.559 31.552 1.00 56.19 N
ATOM 24 C4 G B2442 8.994 -58.460 30.221 1.00 56.50 C
ATOM 25 P A B2443 6.907 -54.697 34.020 1.00 55.72 P
ATOM 26 OP1 A B2443 5.661 -55.120 33.301 1.00 56.23 O
ATOM 27 OP2 A B2443 6.825 -53.597 35.022 1.00 55.18 O
ATOM 28 O5' A B2443 7.618 -55.972 34.671 1.00 55.82 O
TER
Atoms:
OP1: (5.661,-55.120,33.301)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
OP2: (6.825,-53.597,35.022)
C3': (7.782,-57.620,38.074)
C1': (8.361,-59.532,36.801)
C5': (7.851,-56.047,36.070)
O4': (8.206,-58.438,35.946)
C8: (10.868,-59.144,36.435)
O2': (6.498,-59.631,38.307)
C6: (12.498,-62.081,37.412)
C5: (11.709,-60.978,37.069)
C4: (10.328,-61.092,37.243)
P: (6.907,-54.697,34.020)
C4': (7.476,-57.394,36.620)
C2': (7.819,-59.129,38.173)
C2: (10.528,-63.139,37.975)
N1: (11.874,-63.182,37.870)
N3: (9.661,-62.162,37.701)
N6: (13.821,-62.119,37.310)
N7: (12.035,-59.734,36.567)
N9: (9.783,-59.899,36.834)
O5': (7.618,-55.972,34.671)
O3': (6.803,-57.058,38.898)
OP1: (14.173,-55.982,33.691)
OP2: (12.004,-56.254,35.102)
C3': (8.566,-55.210,32.118)
C1': (9.088,-55.869,29.893)
C5': (10.970,-54.856,32.828)
O6: (9.004,-61.886,29.084)
O4': (10.278,-55.638,30.633)
C8: (9.088,-57.699,28.188)
C2: (8.946,-59.826,31.952)
C6: (9.000,-60.848,29.745)
C5: (9.026,-59.502,29.304)
C4: (8.994,-58.460,30.221)
P: (12.742,-56.457,33.807)
C4': (9.948,-54.777,31.742)
C2': (7.906,-55.412,30.763)
O2': (7.445,-54.168,30.269)
N1: (8.956,-60.922,31.117)
N2: (8.914,-60.081,33.274)
N3: (8.957,-58.559,31.552)
N7: (9.074,-59.004,28.009)
N9: (9.023,-57.289,29.493)
O5': (11.881,-55.886,32.607)
O3': (7.931,-54.247,32.896)
OP2: (12.004,-56.254,35.102)
C3': (8.566,-55.210,32.118)
C1': (9.088,-55.869,29.893)
C5': (10.970,-54.856,32.828)
O6: (9.004,-61.886,29.084)
O4': (10.278,-55.638,30.633)
C8: (9.088,-57.699,28.188)
C2: (8.946,-59.826,31.952)
C6: (9.000,-60.848,29.745)
C5: (9.026,-59.502,29.304)
C4: (8.994,-58.460,30.221)
P: (12.742,-56.457,33.807)
C4': (9.948,-54.777,31.742)
C2': (7.906,-55.412,30.763)
O2': (7.445,-54.168,30.269)
N1: (8.956,-60.922,31.117)
N2: (8.914,-60.081,33.274)
N3: (8.957,-58.559,31.552)
N7: (9.074,-59.004,28.009)
N9: (9.023,-57.289,29.493)
O5': (11.881,-55.886,32.607)
O3': (7.931,-54.247,32.896)
Image (generated by PyMOL):