Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11965:11983
Extra
PDB:
ATOM 1 O3' G A1964 -2.712 -16.564 124.153 1.00 49.77 O
ATOM 2 P A A1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 3 OP1 A A1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 4 OP2 A A1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 5 O5' A A1965 -0.259 -16.842 124.063 1.00 48.94 O
ATOM 6 C5' A A1965 0.986 -17.490 123.914 1.00 48.71 C
ATOM 7 C4' A A1965 2.087 -16.683 124.536 1.00 48.76 C
ATOM 8 O4' A A1965 2.277 -15.457 123.783 1.00 48.46 O
ATOM 9 C3' A A1965 1.850 -16.254 125.976 1.00 49.28 C
ATOM 10 O3' A A1965 3.078 -16.341 126.684 1.00 49.36 O
ATOM 11 C2' A A1965 1.461 -14.783 125.830 1.00 49.27 C
ATOM 12 O2' A A1965 1.704 -13.993 126.966 1.00 49.64 O
ATOM 13 C1' A A1965 2.349 -14.373 124.688 1.00 48.75 C
ATOM 14 N9 A A1965 1.950 -13.131 123.998 1.00 48.58 N
ATOM 15 C8 A A1965 0.944 -12.948 123.071 1.00 48.41 C
ATOM 16 N7 A A1965 0.830 -11.740 122.603 1.00 48.29 N
ATOM 17 C5 A A1965 1.843 -11.073 123.231 1.00 48.36 C
ATOM 18 C6 A A1965 2.224 -9.735 123.119 1.00 48.30 C
ATOM 19 N6 A A1965 1.577 -8.891 122.308 1.00 48.15 N
ATOM 20 N1 A A1965 3.276 -9.318 123.879 1.00 48.42 N
ATOM 21 C2 A A1965 3.874 -10.245 124.680 1.00 48.59 C
ATOM 22 N3 A A1965 3.592 -11.557 124.865 1.00 48.67 N
ATOM 23 C4 A A1965 2.550 -11.905 124.091 1.00 48.54 C
ATOM 24 P U A1966 3.356 -17.554 127.699 1.00 82.81 P
ATOM 25 OP1 U A1966 2.072 -17.903 128.350 1.00 83.22 O
ATOM 26 OP2 U A1966 4.499 -17.155 128.561 1.00 82.97 O
ATOM 27 O5' U A1966 3.794 -18.709 126.720 1.00 82.43 O
TER
ATOM 1 O3' U B1982 4.654 0.008 128.311 1.00 49.62 O
ATOM 2 P U B1983 3.591 -1.139 128.449 1.00 53.19 P
ATOM 3 OP1 U B1983 2.357 -0.539 128.977 1.00 53.61 O
ATOM 4 OP2 U B1983 4.233 -2.242 129.202 1.00 53.30 O
ATOM 5 O5' U B1983 3.374 -1.557 126.949 1.00 52.63 O
ATOM 6 C5' U B1983 2.905 -0.622 126.003 1.00 52.43 C
ATOM 7 C4' U B1983 2.660 -1.281 124.681 1.00 51.95 C
ATOM 8 O4' U B1983 3.780 -2.128 124.332 1.00 51.61 O
ATOM 9 C3' U B1983 1.473 -2.198 124.634 1.00 52.03 C
ATOM 10 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 11 C2' U B1983 1.821 -3.128 123.494 1.00 51.52 C
ATOM 12 O2' U B1983 1.552 -2.485 122.248 1.00 51.19 O
ATOM 13 C1' U B1983 3.332 -3.256 123.646 1.00 51.35 C
ATOM 14 N1 U B1983 3.757 -4.466 124.410 1.00 51.48 N
ATOM 15 C2 U B1983 3.546 -5.786 123.956 1.00 51.28 C
ATOM 16 O2 U B1983 2.952 -6.159 122.963 1.00 51.00 O
ATOM 17 N3 U B1983 4.044 -6.771 124.736 1.00 51.43 N
ATOM 18 C4 U B1983 4.736 -6.601 125.894 1.00 51.75 C
ATOM 19 O4 U B1983 5.096 -7.634 126.460 1.00 51.86 O
ATOM 20 C5 U B1983 4.937 -5.246 126.312 1.00 51.95 C
ATOM 21 C6 U B1983 4.460 -4.255 125.571 1.00 51.80 C
ATOM 22 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 23 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 24 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 25 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
TER
ATOM 2 P A A1965 -1.572 -17.624 124.520 1.00 49.30 P
ATOM 3 OP1 A A1965 -1.767 -18.824 123.674 1.00 49.08 O
ATOM 4 OP2 A A1965 -1.589 -17.782 125.993 1.00 49.81 O
ATOM 5 O5' A A1965 -0.259 -16.842 124.063 1.00 48.94 O
ATOM 6 C5' A A1965 0.986 -17.490 123.914 1.00 48.71 C
ATOM 7 C4' A A1965 2.087 -16.683 124.536 1.00 48.76 C
ATOM 8 O4' A A1965 2.277 -15.457 123.783 1.00 48.46 O
ATOM 9 C3' A A1965 1.850 -16.254 125.976 1.00 49.28 C
ATOM 10 O3' A A1965 3.078 -16.341 126.684 1.00 49.36 O
ATOM 11 C2' A A1965 1.461 -14.783 125.830 1.00 49.27 C
ATOM 12 O2' A A1965 1.704 -13.993 126.966 1.00 49.64 O
ATOM 13 C1' A A1965 2.349 -14.373 124.688 1.00 48.75 C
ATOM 14 N9 A A1965 1.950 -13.131 123.998 1.00 48.58 N
ATOM 15 C8 A A1965 0.944 -12.948 123.071 1.00 48.41 C
ATOM 16 N7 A A1965 0.830 -11.740 122.603 1.00 48.29 N
ATOM 17 C5 A A1965 1.843 -11.073 123.231 1.00 48.36 C
ATOM 18 C6 A A1965 2.224 -9.735 123.119 1.00 48.30 C
ATOM 19 N6 A A1965 1.577 -8.891 122.308 1.00 48.15 N
ATOM 20 N1 A A1965 3.276 -9.318 123.879 1.00 48.42 N
ATOM 21 C2 A A1965 3.874 -10.245 124.680 1.00 48.59 C
ATOM 22 N3 A A1965 3.592 -11.557 124.865 1.00 48.67 N
ATOM 23 C4 A A1965 2.550 -11.905 124.091 1.00 48.54 C
ATOM 24 P U A1966 3.356 -17.554 127.699 1.00 82.81 P
ATOM 25 OP1 U A1966 2.072 -17.903 128.350 1.00 83.22 O
ATOM 26 OP2 U A1966 4.499 -17.155 128.561 1.00 82.97 O
ATOM 27 O5' U A1966 3.794 -18.709 126.720 1.00 82.43 O
TER
ATOM 1 O3' U B1982 4.654 0.008 128.311 1.00 49.62 O
ATOM 2 P U B1983 3.591 -1.139 128.449 1.00 53.19 P
ATOM 3 OP1 U B1983 2.357 -0.539 128.977 1.00 53.61 O
ATOM 4 OP2 U B1983 4.233 -2.242 129.202 1.00 53.30 O
ATOM 5 O5' U B1983 3.374 -1.557 126.949 1.00 52.63 O
ATOM 6 C5' U B1983 2.905 -0.622 126.003 1.00 52.43 C
ATOM 7 C4' U B1983 2.660 -1.281 124.681 1.00 51.95 C
ATOM 8 O4' U B1983 3.780 -2.128 124.332 1.00 51.61 O
ATOM 9 C3' U B1983 1.473 -2.198 124.634 1.00 52.03 C
ATOM 10 O3' U B1983 0.300 -1.475 124.401 1.00 52.18 O
ATOM 11 C2' U B1983 1.821 -3.128 123.494 1.00 51.52 C
ATOM 12 O2' U B1983 1.552 -2.485 122.248 1.00 51.19 O
ATOM 13 C1' U B1983 3.332 -3.256 123.646 1.00 51.35 C
ATOM 14 N1 U B1983 3.757 -4.466 124.410 1.00 51.48 N
ATOM 15 C2 U B1983 3.546 -5.786 123.956 1.00 51.28 C
ATOM 16 O2 U B1983 2.952 -6.159 122.963 1.00 51.00 O
ATOM 17 N3 U B1983 4.044 -6.771 124.736 1.00 51.43 N
ATOM 18 C4 U B1983 4.736 -6.601 125.894 1.00 51.75 C
ATOM 19 O4 U B1983 5.096 -7.634 126.460 1.00 51.86 O
ATOM 20 C5 U B1983 4.937 -5.246 126.312 1.00 51.95 C
ATOM 21 C6 U B1983 4.460 -4.255 125.571 1.00 51.80 C
ATOM 22 P G B1984 -1.067 -1.850 125.130 1.00 54.24 P
ATOM 23 OP1 G B1984 -2.044 -0.833 124.685 1.00 54.33 O
ATOM 24 OP2 G B1984 -0.784 -1.997 126.568 1.00 54.69 O
ATOM 25 O5' G B1984 -1.431 -3.258 124.513 1.00 53.98 O
TER
Atoms:
OP1: (-1.767,-18.824,123.674)
OP2: (-1.589,-17.782,125.993)
C3': (1.850,-16.254,125.976)
C1': (2.349,-14.373,124.688)
C5': (0.986,-17.490,123.914)
O4': (2.277,-15.457,123.783)
C8: (0.944,-12.948,123.071)
O2': (1.704,-13.993,126.966)
C6: (2.224,-9.735,123.119)
C5: (1.843,-11.073,123.231)
C4: (2.550,-11.905,124.091)
P: (-1.572,-17.624,124.520)
C4': (2.087,-16.683,124.536)
C2': (1.461,-14.783,125.830)
C2: (3.874,-10.245,124.680)
N1: (3.276,-9.318,123.879)
N3: (3.592,-11.557,124.865)
N6: (1.577,-8.891,122.308)
N7: (0.830,-11.740,122.603)
N9: (1.950,-13.131,123.998)
O5': (-0.259,-16.842,124.063)
O3': (3.078,-16.341,126.684)
OP2: (-1.589,-17.782,125.993)
C3': (1.850,-16.254,125.976)
C1': (2.349,-14.373,124.688)
C5': (0.986,-17.490,123.914)
O4': (2.277,-15.457,123.783)
C8: (0.944,-12.948,123.071)
O2': (1.704,-13.993,126.966)
C6: (2.224,-9.735,123.119)
C5: (1.843,-11.073,123.231)
C4: (2.550,-11.905,124.091)
P: (-1.572,-17.624,124.520)
C4': (2.087,-16.683,124.536)
C2': (1.461,-14.783,125.830)
C2: (3.874,-10.245,124.680)
N1: (3.276,-9.318,123.879)
N3: (3.592,-11.557,124.865)
N6: (1.577,-8.891,122.308)
N7: (0.830,-11.740,122.603)
N9: (1.950,-13.131,123.998)
O5': (-0.259,-16.842,124.063)
O3': (3.078,-16.341,126.684)
C4: (4.736,-6.601,125.894)
N3: (4.044,-6.771,124.736)
OP1: (2.357,-0.539,128.977)
OP2: (4.233,-2.242,129.202)
C2: (3.546,-5.786,123.956)
C1': (3.332,-3.256,123.646)
C3': (1.473,-2.198,124.634)
O5': (3.374,-1.557,126.949)
O4': (3.780,-2.128,124.332)
C5': (2.905,-0.622,126.003)
P: (3.591,-1.139,128.449)
C4': (2.660,-1.281,124.681)
C2': (1.821,-3.128,123.494)
O2': (1.552,-2.485,122.248)
N1: (3.757,-4.466,124.410)
O4: (5.096,-7.634,126.460)
O2: (2.952,-6.159,122.963)
C6: (4.460,-4.255,125.571)
C5: (4.937,-5.246,126.312)
O3': (0.300,-1.475,124.401)
N3: (4.044,-6.771,124.736)
OP1: (2.357,-0.539,128.977)
OP2: (4.233,-2.242,129.202)
C2: (3.546,-5.786,123.956)
C1': (3.332,-3.256,123.646)
C3': (1.473,-2.198,124.634)
O5': (3.374,-1.557,126.949)
O4': (3.780,-2.128,124.332)
C5': (2.905,-0.622,126.003)
P: (3.591,-1.139,128.449)
C4': (2.660,-1.281,124.681)
C2': (1.821,-3.128,123.494)
O2': (1.552,-2.485,122.248)
N1: (3.757,-4.466,124.410)
O4: (5.096,-7.634,126.460)
O2: (2.952,-6.159,122.963)
C6: (4.460,-4.255,125.571)
C5: (4.937,-5.246,126.312)
O3': (0.300,-1.475,124.401)
Image (generated by PyMOL):