Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02000:02489
Extra
PDB:
ATOM 1 O3' G A1999 47.249 153.344 83.497 1.00 35.69 O
ATOM 2 P A A2000 46.239 152.127 83.752 1.00 34.63 P
ATOM 3 OP1 A A2000 46.214 151.398 82.470 1.00 35.33 O
ATOM 4 OP2 A A2000 44.979 152.623 84.331 1.00 33.25 O
ATOM 5 O5' A A2000 46.983 151.269 84.866 1.00 34.57 O
ATOM 6 C5' A A2000 47.329 149.887 84.651 1.00 34.76 C
ATOM 7 C4' A A2000 48.768 149.763 84.185 1.00 34.73 C
ATOM 8 O4' A A2000 49.642 150.694 84.873 1.00 34.10 O
ATOM 9 C3' A A2000 49.377 148.390 84.403 1.00 34.99 C
ATOM 10 O3' A A2000 49.126 147.532 83.304 1.00 35.68 O
ATOM 11 C2' A A2000 50.850 148.696 84.612 1.00 35.06 C
ATOM 12 O2' A A2000 51.535 148.908 83.398 1.00 36.76 O
ATOM 13 C1' A A2000 50.761 150.003 85.398 1.00 34.03 C
ATOM 14 N9 A A2000 50.531 149.799 86.831 1.00 34.85 N
ATOM 15 C8 A A2000 49.498 150.298 87.589 1.00 35.16 C
ATOM 16 N7 A A2000 49.547 149.945 88.847 1.00 35.26 N
ATOM 17 C5 A A2000 50.688 149.162 88.930 1.00 35.22 C
ATOM 18 C6 A A2000 51.294 148.482 90.002 1.00 35.49 C
ATOM 19 N6 A A2000 50.800 148.456 91.238 1.00 35.74 N
ATOM 20 N1 A A2000 52.434 147.811 89.754 1.00 36.08 N
ATOM 21 C2 A A2000 52.910 147.805 88.507 1.00 36.26 C
ATOM 22 N3 A A2000 52.424 148.388 87.414 1.00 35.07 N
ATOM 23 C4 A A2000 51.304 149.065 87.697 1.00 34.72 C
ATOM 24 P A A2001 48.467 146.096 83.559 1.00 35.67 P
ATOM 25 OP1 A A2001 48.185 145.492 82.226 1.00 33.72 O
ATOM 26 OP2 A A2001 47.364 146.273 84.533 1.00 35.22 O
ATOM 27 O5' A A2001 49.637 145.284 84.260 1.00 33.25 O
TER
ATOM 1 O3' C B2488 58.894 143.300 95.308 1.00 36.35 O
ATOM 2 P U B2489 58.801 144.231 96.610 1.00 34.98 P
ATOM 3 OP1 U B2489 59.820 145.284 96.446 1.00 35.12 O
ATOM 4 OP2 U B2489 58.819 143.372 97.821 1.00 35.51 O
ATOM 5 O5' U B2489 57.371 144.912 96.484 1.00 33.57 O
ATOM 6 C5' U B2489 56.923 145.841 97.464 1.00 34.09 C
ATOM 7 C4' U B2489 55.539 146.335 97.133 1.00 36.36 C
ATOM 8 O4' U B2489 55.565 147.110 95.899 1.00 38.09 O
ATOM 9 C3' U B2489 54.466 145.272 96.945 1.00 35.50 C
ATOM 10 O3' U B2489 53.248 145.792 97.439 1.00 37.81 O
ATOM 11 C2' U B2489 54.372 145.158 95.429 1.00 36.16 C
ATOM 12 O2' U B2489 53.104 144.723 94.990 1.00 36.02 O
ATOM 13 C1' U B2489 54.588 146.608 95.013 1.00 36.35 C
ATOM 14 N1 U B2489 55.056 146.783 93.631 1.00 36.40 N
ATOM 15 C2 U B2489 54.103 147.035 92.665 1.00 37.15 C
ATOM 16 O2 U B2489 52.915 147.085 92.904 1.00 39.81 O
ATOM 17 N3 U B2489 54.589 147.222 91.404 1.00 37.58 N
ATOM 18 C4 U B2489 55.900 147.179 91.010 1.00 39.10 C
ATOM 19 O4 U B2489 56.184 147.405 89.832 1.00 41.92 O
ATOM 20 C5 U B2489 56.828 146.893 92.061 1.00 38.24 C
ATOM 21 C6 U B2489 56.383 146.709 93.305 1.00 36.56 C
ATOM 22 P A B2490 52.688 145.302 98.858 1.00 39.50 P
ATOM 23 OP1 A B2490 52.378 146.511 99.629 1.00 41.59 O
ATOM 24 OP2 A B2490 53.564 144.269 99.444 1.00 41.94 O
ATOM 25 O5' A B2490 51.299 144.625 98.517 1.00 38.58 O
TER
ATOM 2 P A A2000 46.239 152.127 83.752 1.00 34.63 P
ATOM 3 OP1 A A2000 46.214 151.398 82.470 1.00 35.33 O
ATOM 4 OP2 A A2000 44.979 152.623 84.331 1.00 33.25 O
ATOM 5 O5' A A2000 46.983 151.269 84.866 1.00 34.57 O
ATOM 6 C5' A A2000 47.329 149.887 84.651 1.00 34.76 C
ATOM 7 C4' A A2000 48.768 149.763 84.185 1.00 34.73 C
ATOM 8 O4' A A2000 49.642 150.694 84.873 1.00 34.10 O
ATOM 9 C3' A A2000 49.377 148.390 84.403 1.00 34.99 C
ATOM 10 O3' A A2000 49.126 147.532 83.304 1.00 35.68 O
ATOM 11 C2' A A2000 50.850 148.696 84.612 1.00 35.06 C
ATOM 12 O2' A A2000 51.535 148.908 83.398 1.00 36.76 O
ATOM 13 C1' A A2000 50.761 150.003 85.398 1.00 34.03 C
ATOM 14 N9 A A2000 50.531 149.799 86.831 1.00 34.85 N
ATOM 15 C8 A A2000 49.498 150.298 87.589 1.00 35.16 C
ATOM 16 N7 A A2000 49.547 149.945 88.847 1.00 35.26 N
ATOM 17 C5 A A2000 50.688 149.162 88.930 1.00 35.22 C
ATOM 18 C6 A A2000 51.294 148.482 90.002 1.00 35.49 C
ATOM 19 N6 A A2000 50.800 148.456 91.238 1.00 35.74 N
ATOM 20 N1 A A2000 52.434 147.811 89.754 1.00 36.08 N
ATOM 21 C2 A A2000 52.910 147.805 88.507 1.00 36.26 C
ATOM 22 N3 A A2000 52.424 148.388 87.414 1.00 35.07 N
ATOM 23 C4 A A2000 51.304 149.065 87.697 1.00 34.72 C
ATOM 24 P A A2001 48.467 146.096 83.559 1.00 35.67 P
ATOM 25 OP1 A A2001 48.185 145.492 82.226 1.00 33.72 O
ATOM 26 OP2 A A2001 47.364 146.273 84.533 1.00 35.22 O
ATOM 27 O5' A A2001 49.637 145.284 84.260 1.00 33.25 O
TER
ATOM 1 O3' C B2488 58.894 143.300 95.308 1.00 36.35 O
ATOM 2 P U B2489 58.801 144.231 96.610 1.00 34.98 P
ATOM 3 OP1 U B2489 59.820 145.284 96.446 1.00 35.12 O
ATOM 4 OP2 U B2489 58.819 143.372 97.821 1.00 35.51 O
ATOM 5 O5' U B2489 57.371 144.912 96.484 1.00 33.57 O
ATOM 6 C5' U B2489 56.923 145.841 97.464 1.00 34.09 C
ATOM 7 C4' U B2489 55.539 146.335 97.133 1.00 36.36 C
ATOM 8 O4' U B2489 55.565 147.110 95.899 1.00 38.09 O
ATOM 9 C3' U B2489 54.466 145.272 96.945 1.00 35.50 C
ATOM 10 O3' U B2489 53.248 145.792 97.439 1.00 37.81 O
ATOM 11 C2' U B2489 54.372 145.158 95.429 1.00 36.16 C
ATOM 12 O2' U B2489 53.104 144.723 94.990 1.00 36.02 O
ATOM 13 C1' U B2489 54.588 146.608 95.013 1.00 36.35 C
ATOM 14 N1 U B2489 55.056 146.783 93.631 1.00 36.40 N
ATOM 15 C2 U B2489 54.103 147.035 92.665 1.00 37.15 C
ATOM 16 O2 U B2489 52.915 147.085 92.904 1.00 39.81 O
ATOM 17 N3 U B2489 54.589 147.222 91.404 1.00 37.58 N
ATOM 18 C4 U B2489 55.900 147.179 91.010 1.00 39.10 C
ATOM 19 O4 U B2489 56.184 147.405 89.832 1.00 41.92 O
ATOM 20 C5 U B2489 56.828 146.893 92.061 1.00 38.24 C
ATOM 21 C6 U B2489 56.383 146.709 93.305 1.00 36.56 C
ATOM 22 P A B2490 52.688 145.302 98.858 1.00 39.50 P
ATOM 23 OP1 A B2490 52.378 146.511 99.629 1.00 41.59 O
ATOM 24 OP2 A B2490 53.564 144.269 99.444 1.00 41.94 O
ATOM 25 O5' A B2490 51.299 144.625 98.517 1.00 38.58 O
TER
Atoms:
OP1: (46.214,151.398,82.470)
OP2: (44.979,152.623,84.331)
C3': (49.377,148.390,84.403)
C1': (50.761,150.003,85.398)
C5': (47.329,149.887,84.651)
O4': (49.642,150.694,84.873)
C8: (49.498,150.298,87.589)
O2': (51.535,148.908,83.398)
C6: (51.294,148.482,90.002)
C5: (50.688,149.162,88.930)
C4: (51.304,149.065,87.697)
P: (46.239,152.127,83.752)
C4': (48.768,149.763,84.185)
C2': (50.850,148.696,84.612)
C2: (52.910,147.805,88.507)
N1: (52.434,147.811,89.754)
N3: (52.424,148.388,87.414)
N6: (50.800,148.456,91.238)
N7: (49.547,149.945,88.847)
N9: (50.531,149.799,86.831)
O5': (46.983,151.269,84.866)
O3': (49.126,147.532,83.304)
OP2: (44.979,152.623,84.331)
C3': (49.377,148.390,84.403)
C1': (50.761,150.003,85.398)
C5': (47.329,149.887,84.651)
O4': (49.642,150.694,84.873)
C8: (49.498,150.298,87.589)
O2': (51.535,148.908,83.398)
C6: (51.294,148.482,90.002)
C5: (50.688,149.162,88.930)
C4: (51.304,149.065,87.697)
P: (46.239,152.127,83.752)
C4': (48.768,149.763,84.185)
C2': (50.850,148.696,84.612)
C2: (52.910,147.805,88.507)
N1: (52.434,147.811,89.754)
N3: (52.424,148.388,87.414)
N6: (50.800,148.456,91.238)
N7: (49.547,149.945,88.847)
N9: (50.531,149.799,86.831)
O5': (46.983,151.269,84.866)
O3': (49.126,147.532,83.304)
C4: (55.900,147.179,91.010)
N3: (54.589,147.222,91.404)
OP1: (59.820,145.284,96.446)
OP2: (58.819,143.372,97.821)
C2: (54.103,147.035,92.665)
C1': (54.588,146.608,95.013)
C3': (54.466,145.272,96.945)
O5': (57.371,144.912,96.484)
O4': (55.565,147.110,95.899)
C5': (56.923,145.841,97.464)
P: (58.801,144.231,96.610)
C4': (55.539,146.335,97.133)
C2': (54.372,145.158,95.429)
O2': (53.104,144.723,94.990)
N1: (55.056,146.783,93.631)
O4: (56.184,147.405,89.832)
O2: (52.915,147.085,92.904)
C6: (56.383,146.709,93.305)
C5: (56.828,146.893,92.061)
O3': (53.248,145.792,97.439)
N3: (54.589,147.222,91.404)
OP1: (59.820,145.284,96.446)
OP2: (58.819,143.372,97.821)
C2: (54.103,147.035,92.665)
C1': (54.588,146.608,95.013)
C3': (54.466,145.272,96.945)
O5': (57.371,144.912,96.484)
O4': (55.565,147.110,95.899)
C5': (56.923,145.841,97.464)
P: (58.801,144.231,96.610)
C4': (55.539,146.335,97.133)
C2': (54.372,145.158,95.429)
O2': (53.104,144.723,94.990)
N1: (55.056,146.783,93.631)
O4: (56.184,147.405,89.832)
O2: (52.915,147.085,92.904)
C6: (56.383,146.709,93.305)
C5: (56.828,146.893,92.061)
O3': (53.248,145.792,97.439)
Image (generated by PyMOL):