Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12388:12393
Extra
PDB:
ATOM 1 O3' A A2387 32.451 -37.390 36.639 1.00 38.67 O
ATOM 2 P A A2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 3 OP1 A A2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 4 OP2 A A2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 5 O5' A A2388 33.599 -36.633 34.560 1.00 40.72 O
ATOM 6 C5' A A2388 33.589 -36.284 33.185 1.00 40.95 C
ATOM 7 C4' A A2388 34.617 -35.222 32.872 1.00 40.78 C
ATOM 8 O4' A A2388 34.386 -34.072 33.696 1.00 40.41 O
ATOM 9 C3' A A2388 36.071 -35.605 33.130 1.00 40.72 C
ATOM 10 O3' A A2388 36.665 -36.199 32.001 1.00 41.05 O
ATOM 11 C2' A A2388 36.758 -34.297 33.560 1.00 40.37 C
ATOM 12 O2' A A2388 37.489 -33.728 32.494 1.00 40.48 O
ATOM 13 C1' A A2388 35.591 -33.367 33.892 1.00 40.19 C
ATOM 14 N9 A A2388 35.635 -32.843 35.280 1.00 39.82 N
ATOM 15 C8 A A2388 35.447 -31.535 35.634 1.00 39.55 C
ATOM 16 N7 A A2388 35.475 -31.301 36.913 1.00 39.26 N
ATOM 17 C5 A A2388 35.719 -32.528 37.447 1.00 39.34 C
ATOM 18 C6 A A2388 35.860 -32.932 38.759 1.00 39.15 C
ATOM 19 N6 A A2388 35.794 -32.095 39.757 1.00 38.84 N
ATOM 20 N1 A A2388 36.052 -34.227 39.031 1.00 39.30 N
ATOM 21 C2 A A2388 36.128 -35.066 37.993 1.00 39.63 C
ATOM 22 N3 A A2388 36.033 -34.802 36.687 1.00 39.84 N
ATOM 23 C4 A A2388 35.808 -33.497 36.473 1.00 39.68 C
ATOM 24 P A A2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 25 OP1 A A2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 26 OP2 A A2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 27 O5' A A2389 36.055 -38.636 31.764 1.00 45.14 O
TER
ATOM 1 O3' A B2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 2 P U B2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 3 OP1 U B2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 4 OP2 U B2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 5 O5' U B2393 36.190 -37.006 47.233 1.00 37.27 O
ATOM 6 C5' U B2393 36.847 -35.974 47.966 1.00 36.97 C
ATOM 7 C4' U B2393 37.022 -34.737 47.141 1.00 36.86 C
ATOM 8 O4' U B2393 37.699 -35.077 45.928 1.00 37.06 O
ATOM 9 C3' U B2393 35.748 -34.081 46.684 1.00 36.85 C
ATOM 10 O3' U B2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 11 C2' U B2393 36.138 -33.411 45.369 1.00 36.91 C
ATOM 12 O2' U B2393 36.721 -32.156 45.590 1.00 36.66 O
ATOM 13 C1' U B2393 37.222 -34.319 44.858 1.00 37.09 C
ATOM 14 N1 U B2393 36.750 -35.224 43.827 1.00 37.41 N
ATOM 15 C2 U B2393 36.501 -34.656 42.623 1.00 37.51 C
ATOM 16 O2 U B2393 36.621 -33.480 42.422 1.00 37.34 O
ATOM 17 N3 U B2393 36.119 -35.496 41.651 1.00 37.83 N
ATOM 18 C4 U B2393 35.966 -36.844 41.775 1.00 38.05 C
ATOM 19 O4 U B2393 35.573 -37.481 40.781 1.00 38.35 O
ATOM 20 C5 U B2393 36.264 -37.356 43.085 1.00 37.93 C
ATOM 21 C6 U B2393 36.652 -36.561 44.059 1.00 37.62 C
ATOM 22 P A B2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 23 OP1 A B2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 24 OP2 A B2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 25 O5' A B2394 33.542 -32.199 49.089 1.00 37.51 O
TER
ATOM 2 P A A2388 32.719 -37.838 35.120 1.00 40.87 P
ATOM 3 OP1 A A2388 31.364 -37.886 34.378 1.00 41.12 O
ATOM 4 OP2 A A2388 33.495 -39.067 35.204 1.00 41.05 O
ATOM 5 O5' A A2388 33.599 -36.633 34.560 1.00 40.72 O
ATOM 6 C5' A A2388 33.589 -36.284 33.185 1.00 40.95 C
ATOM 7 C4' A A2388 34.617 -35.222 32.872 1.00 40.78 C
ATOM 8 O4' A A2388 34.386 -34.072 33.696 1.00 40.41 O
ATOM 9 C3' A A2388 36.071 -35.605 33.130 1.00 40.72 C
ATOM 10 O3' A A2388 36.665 -36.199 32.001 1.00 41.05 O
ATOM 11 C2' A A2388 36.758 -34.297 33.560 1.00 40.37 C
ATOM 12 O2' A A2388 37.489 -33.728 32.494 1.00 40.48 O
ATOM 13 C1' A A2388 35.591 -33.367 33.892 1.00 40.19 C
ATOM 14 N9 A A2388 35.635 -32.843 35.280 1.00 39.82 N
ATOM 15 C8 A A2388 35.447 -31.535 35.634 1.00 39.55 C
ATOM 16 N7 A A2388 35.475 -31.301 36.913 1.00 39.26 N
ATOM 17 C5 A A2388 35.719 -32.528 37.447 1.00 39.34 C
ATOM 18 C6 A A2388 35.860 -32.932 38.759 1.00 39.15 C
ATOM 19 N6 A A2388 35.794 -32.095 39.757 1.00 38.84 N
ATOM 20 N1 A A2388 36.052 -34.227 39.031 1.00 39.30 N
ATOM 21 C2 A A2388 36.128 -35.066 37.993 1.00 39.63 C
ATOM 22 N3 A A2388 36.033 -34.802 36.687 1.00 39.84 N
ATOM 23 C4 A A2388 35.808 -33.497 36.473 1.00 39.68 C
ATOM 24 P A A2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 25 OP1 A A2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 26 OP2 A A2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 27 O5' A A2389 36.055 -38.636 31.764 1.00 45.14 O
TER
ATOM 1 O3' A B2392 37.818 -38.858 47.547 1.00 37.92 O
ATOM 2 P U B2393 36.272 -38.527 47.725 1.00 37.49 P
ATOM 3 OP1 U B2393 35.970 -38.595 49.196 1.00 37.33 O
ATOM 4 OP2 U B2393 35.538 -39.432 46.780 1.00 37.81 O
ATOM 5 O5' U B2393 36.190 -37.006 47.233 1.00 37.27 O
ATOM 6 C5' U B2393 36.847 -35.974 47.966 1.00 36.97 C
ATOM 7 C4' U B2393 37.022 -34.737 47.141 1.00 36.86 C
ATOM 8 O4' U B2393 37.699 -35.077 45.928 1.00 37.06 O
ATOM 9 C3' U B2393 35.748 -34.081 46.684 1.00 36.85 C
ATOM 10 O3' U B2393 35.232 -33.189 47.646 1.00 36.61 O
ATOM 11 C2' U B2393 36.138 -33.411 45.369 1.00 36.91 C
ATOM 12 O2' U B2393 36.721 -32.156 45.590 1.00 36.66 O
ATOM 13 C1' U B2393 37.222 -34.319 44.858 1.00 37.09 C
ATOM 14 N1 U B2393 36.750 -35.224 43.827 1.00 37.41 N
ATOM 15 C2 U B2393 36.501 -34.656 42.623 1.00 37.51 C
ATOM 16 O2 U B2393 36.621 -33.480 42.422 1.00 37.34 O
ATOM 17 N3 U B2393 36.119 -35.496 41.651 1.00 37.83 N
ATOM 18 C4 U B2393 35.966 -36.844 41.775 1.00 38.05 C
ATOM 19 O4 U B2393 35.573 -37.481 40.781 1.00 38.35 O
ATOM 20 C5 U B2393 36.264 -37.356 43.085 1.00 37.93 C
ATOM 21 C6 U B2393 36.652 -36.561 44.059 1.00 37.62 C
ATOM 22 P A B2394 33.952 -33.584 48.501 1.00 37.77 P
ATOM 23 OP1 A B2394 34.387 -34.481 49.587 1.00 37.77 O
ATOM 24 OP2 A B2394 32.903 -34.067 47.545 1.00 38.02 O
ATOM 25 O5' A B2394 33.542 -32.199 49.089 1.00 37.51 O
TER
Atoms:
OP1: (31.364,-37.886,34.378)
OP2: (33.495,-39.067,35.204)
C3': (36.071,-35.605,33.130)
C1': (35.591,-33.367,33.892)
C5': (33.589,-36.284,33.185)
O4': (34.386,-34.072,33.696)
C8: (35.447,-31.535,35.634)
O2': (37.489,-33.728,32.494)
C6: (35.860,-32.932,38.759)
C5: (35.719,-32.528,37.447)
C4: (35.808,-33.497,36.473)
P: (32.719,-37.838,35.120)
C4': (34.617,-35.222,32.872)
C2': (36.758,-34.297,33.560)
C2: (36.128,-35.066,37.993)
N1: (36.052,-34.227,39.031)
N3: (36.033,-34.802,36.687)
N6: (35.794,-32.095,39.757)
N7: (35.475,-31.301,36.913)
N9: (35.635,-32.843,35.280)
O5': (33.599,-36.633,34.560)
O3': (36.665,-36.199,32.001)
OP2: (33.495,-39.067,35.204)
C3': (36.071,-35.605,33.130)
C1': (35.591,-33.367,33.892)
C5': (33.589,-36.284,33.185)
O4': (34.386,-34.072,33.696)
C8: (35.447,-31.535,35.634)
O2': (37.489,-33.728,32.494)
C6: (35.860,-32.932,38.759)
C5: (35.719,-32.528,37.447)
C4: (35.808,-33.497,36.473)
P: (32.719,-37.838,35.120)
C4': (34.617,-35.222,32.872)
C2': (36.758,-34.297,33.560)
C2: (36.128,-35.066,37.993)
N1: (36.052,-34.227,39.031)
N3: (36.033,-34.802,36.687)
N6: (35.794,-32.095,39.757)
N7: (35.475,-31.301,36.913)
N9: (35.635,-32.843,35.280)
O5': (33.599,-36.633,34.560)
O3': (36.665,-36.199,32.001)
C4: (35.966,-36.844,41.775)
N3: (36.119,-35.496,41.651)
OP1: (35.970,-38.595,49.196)
OP2: (35.538,-39.432,46.780)
C2: (36.501,-34.656,42.623)
C1': (37.222,-34.319,44.858)
C3': (35.748,-34.081,46.684)
O5': (36.190,-37.006,47.233)
O4': (37.699,-35.077,45.928)
C5': (36.847,-35.974,47.966)
P: (36.272,-38.527,47.725)
C4': (37.022,-34.737,47.141)
C2': (36.138,-33.411,45.369)
O2': (36.721,-32.156,45.590)
N1: (36.750,-35.224,43.827)
O4: (35.573,-37.481,40.781)
O2: (36.621,-33.480,42.422)
C6: (36.652,-36.561,44.059)
C5: (36.264,-37.356,43.085)
O3': (35.232,-33.189,47.646)
N3: (36.119,-35.496,41.651)
OP1: (35.970,-38.595,49.196)
OP2: (35.538,-39.432,46.780)
C2: (36.501,-34.656,42.623)
C1': (37.222,-34.319,44.858)
C3': (35.748,-34.081,46.684)
O5': (36.190,-37.006,47.233)
O4': (37.699,-35.077,45.928)
C5': (36.847,-35.974,47.966)
P: (36.272,-38.527,47.725)
C4': (37.022,-34.737,47.141)
C2': (36.138,-33.411,45.369)
O2': (36.721,-32.156,45.590)
N1: (36.750,-35.224,43.827)
O4: (35.573,-37.481,40.781)
O2: (36.621,-33.480,42.422)
C6: (36.652,-36.561,44.059)
C5: (36.264,-37.356,43.085)
O3': (35.232,-33.189,47.646)
Image (generated by PyMOL):