Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02000:02489
Extra
PDB:
ATOM 1 O3' G A1999 47.363 153.748 83.780 1.00 40.95 O
ATOM 2 P A A2000 46.346 152.515 83.982 1.00 41.28 P
ATOM 3 OP1 A A2000 46.341 151.781 82.685 1.00 40.45 O
ATOM 4 OP2 A A2000 45.062 152.974 84.565 1.00 39.20 O
ATOM 5 O5' A A2000 47.077 151.642 85.093 1.00 41.21 O
ATOM 6 C5' A A2000 47.523 150.297 84.822 1.00 41.72 C
ATOM 7 C4' A A2000 48.980 150.292 84.413 1.00 39.63 C
ATOM 8 O4' A A2000 49.735 151.281 85.157 1.00 40.45 O
ATOM 9 C3' A A2000 49.692 148.976 84.663 1.00 40.22 C
ATOM 10 O3' A A2000 49.532 148.083 83.582 1.00 40.24 O
ATOM 11 C2' A A2000 51.126 149.407 84.905 1.00 39.55 C
ATOM 12 O2' A A2000 51.795 149.715 83.706 1.00 42.39 O
ATOM 13 C1' A A2000 50.900 150.688 85.706 1.00 38.68 C
ATOM 14 N9 A A2000 50.642 150.424 87.123 1.00 37.17 N
ATOM 15 C8 A A2000 49.579 150.844 87.879 1.00 35.96 C
ATOM 16 N7 A A2000 49.604 150.410 89.108 1.00 35.72 N
ATOM 17 C5 A A2000 50.765 149.658 89.172 1.00 36.15 C
ATOM 18 C6 A A2000 51.363 148.926 90.210 1.00 37.22 C
ATOM 19 N6 A A2000 50.851 148.816 91.437 1.00 37.66 N
ATOM 20 N1 A A2000 52.526 148.302 89.944 1.00 37.76 N
ATOM 21 C2 A A2000 53.046 148.416 88.720 1.00 38.06 C
ATOM 22 N3 A A2000 52.580 149.072 87.666 1.00 37.66 N
ATOM 23 C4 A A2000 51.421 149.674 87.962 1.00 36.32 C
ATOM 24 P A A2001 48.875 146.647 83.838 1.00 40.11 P
ATOM 25 OP1 A A2001 48.651 146.061 82.501 1.00 40.46 O
ATOM 26 OP2 A A2001 47.731 146.807 84.775 1.00 40.52 O
ATOM 27 O5' A A2001 50.020 145.828 84.577 1.00 41.44 O
TER
ATOM 1 O3' C B2488 58.987 143.438 96.166 1.00 54.17 O
ATOM 2 P U B2489 58.607 144.192 97.528 1.00 55.96 P
ATOM 3 OP1 U B2489 59.699 145.161 97.799 1.00 58.82 O
ATOM 4 OP2 U B2489 58.252 143.183 98.563 1.00 56.73 O
ATOM 5 O5' U B2489 57.312 145.033 97.155 1.00 53.21 O
ATOM 6 C5' U B2489 56.969 146.188 97.920 1.00 51.07 C
ATOM 7 C4' U B2489 55.598 146.692 97.546 1.00 50.10 C
ATOM 8 O4' U B2489 55.625 147.331 96.238 1.00 49.91 O
ATOM 9 C3' U B2489 54.464 145.675 97.507 1.00 47.05 C
ATOM 10 O3' U B2489 53.313 146.333 97.996 1.00 44.88 O
ATOM 11 C2' U B2489 54.321 145.411 96.012 1.00 47.37 C
ATOM 12 O2' U B2489 53.038 144.981 95.625 1.00 45.45 O
ATOM 13 C1' U B2489 54.590 146.799 95.442 1.00 48.30 C
ATOM 14 N1 U B2489 55.027 146.806 94.041 1.00 49.24 N
ATOM 15 C2 U B2489 54.085 147.110 93.080 1.00 49.26 C
ATOM 16 O2 U B2489 52.936 147.383 93.349 1.00 49.94 O
ATOM 17 N3 U B2489 54.543 147.086 91.788 1.00 50.61 N
ATOM 18 C4 U B2489 55.828 146.808 91.368 1.00 52.17 C
ATOM 19 O4 U B2489 56.099 146.844 90.164 1.00 53.77 O
ATOM 20 C5 U B2489 56.748 146.513 92.425 1.00 51.96 C
ATOM 21 C6 U B2489 56.325 146.519 93.692 1.00 50.48 C
ATOM 22 P A B2490 52.432 145.653 99.146 1.00 44.61 P
ATOM 23 OP1 A B2490 51.538 146.701 99.665 1.00 46.73 O
ATOM 24 OP2 A B2490 53.300 144.913 100.080 1.00 45.39 O
ATOM 25 O5' A B2490 51.490 144.654 98.345 1.00 46.14 O
TER
ATOM 2 P A A2000 46.346 152.515 83.982 1.00 41.28 P
ATOM 3 OP1 A A2000 46.341 151.781 82.685 1.00 40.45 O
ATOM 4 OP2 A A2000 45.062 152.974 84.565 1.00 39.20 O
ATOM 5 O5' A A2000 47.077 151.642 85.093 1.00 41.21 O
ATOM 6 C5' A A2000 47.523 150.297 84.822 1.00 41.72 C
ATOM 7 C4' A A2000 48.980 150.292 84.413 1.00 39.63 C
ATOM 8 O4' A A2000 49.735 151.281 85.157 1.00 40.45 O
ATOM 9 C3' A A2000 49.692 148.976 84.663 1.00 40.22 C
ATOM 10 O3' A A2000 49.532 148.083 83.582 1.00 40.24 O
ATOM 11 C2' A A2000 51.126 149.407 84.905 1.00 39.55 C
ATOM 12 O2' A A2000 51.795 149.715 83.706 1.00 42.39 O
ATOM 13 C1' A A2000 50.900 150.688 85.706 1.00 38.68 C
ATOM 14 N9 A A2000 50.642 150.424 87.123 1.00 37.17 N
ATOM 15 C8 A A2000 49.579 150.844 87.879 1.00 35.96 C
ATOM 16 N7 A A2000 49.604 150.410 89.108 1.00 35.72 N
ATOM 17 C5 A A2000 50.765 149.658 89.172 1.00 36.15 C
ATOM 18 C6 A A2000 51.363 148.926 90.210 1.00 37.22 C
ATOM 19 N6 A A2000 50.851 148.816 91.437 1.00 37.66 N
ATOM 20 N1 A A2000 52.526 148.302 89.944 1.00 37.76 N
ATOM 21 C2 A A2000 53.046 148.416 88.720 1.00 38.06 C
ATOM 22 N3 A A2000 52.580 149.072 87.666 1.00 37.66 N
ATOM 23 C4 A A2000 51.421 149.674 87.962 1.00 36.32 C
ATOM 24 P A A2001 48.875 146.647 83.838 1.00 40.11 P
ATOM 25 OP1 A A2001 48.651 146.061 82.501 1.00 40.46 O
ATOM 26 OP2 A A2001 47.731 146.807 84.775 1.00 40.52 O
ATOM 27 O5' A A2001 50.020 145.828 84.577 1.00 41.44 O
TER
ATOM 1 O3' C B2488 58.987 143.438 96.166 1.00 54.17 O
ATOM 2 P U B2489 58.607 144.192 97.528 1.00 55.96 P
ATOM 3 OP1 U B2489 59.699 145.161 97.799 1.00 58.82 O
ATOM 4 OP2 U B2489 58.252 143.183 98.563 1.00 56.73 O
ATOM 5 O5' U B2489 57.312 145.033 97.155 1.00 53.21 O
ATOM 6 C5' U B2489 56.969 146.188 97.920 1.00 51.07 C
ATOM 7 C4' U B2489 55.598 146.692 97.546 1.00 50.10 C
ATOM 8 O4' U B2489 55.625 147.331 96.238 1.00 49.91 O
ATOM 9 C3' U B2489 54.464 145.675 97.507 1.00 47.05 C
ATOM 10 O3' U B2489 53.313 146.333 97.996 1.00 44.88 O
ATOM 11 C2' U B2489 54.321 145.411 96.012 1.00 47.37 C
ATOM 12 O2' U B2489 53.038 144.981 95.625 1.00 45.45 O
ATOM 13 C1' U B2489 54.590 146.799 95.442 1.00 48.30 C
ATOM 14 N1 U B2489 55.027 146.806 94.041 1.00 49.24 N
ATOM 15 C2 U B2489 54.085 147.110 93.080 1.00 49.26 C
ATOM 16 O2 U B2489 52.936 147.383 93.349 1.00 49.94 O
ATOM 17 N3 U B2489 54.543 147.086 91.788 1.00 50.61 N
ATOM 18 C4 U B2489 55.828 146.808 91.368 1.00 52.17 C
ATOM 19 O4 U B2489 56.099 146.844 90.164 1.00 53.77 O
ATOM 20 C5 U B2489 56.748 146.513 92.425 1.00 51.96 C
ATOM 21 C6 U B2489 56.325 146.519 93.692 1.00 50.48 C
ATOM 22 P A B2490 52.432 145.653 99.146 1.00 44.61 P
ATOM 23 OP1 A B2490 51.538 146.701 99.665 1.00 46.73 O
ATOM 24 OP2 A B2490 53.300 144.913 100.080 1.00 45.39 O
ATOM 25 O5' A B2490 51.490 144.654 98.345 1.00 46.14 O
TER
Atoms:
OP1: (46.341,151.781,82.685)
OP2: (45.062,152.974,84.565)
C3': (49.692,148.976,84.663)
C1': (50.900,150.688,85.706)
C5': (47.523,150.297,84.822)
O4': (49.735,151.281,85.157)
C8: (49.579,150.844,87.879)
O2': (51.795,149.715,83.706)
C6: (51.363,148.926,90.210)
C5: (50.765,149.658,89.172)
C4: (51.421,149.674,87.962)
P: (46.346,152.515,83.982)
C4': (48.980,150.292,84.413)
C2': (51.126,149.407,84.905)
C2: (53.046,148.416,88.720)
N1: (52.526,148.302,89.944)
N3: (52.580,149.072,87.666)
N6: (50.851,148.816,91.437)
N7: (49.604,150.410,89.108)
N9: (50.642,150.424,87.123)
O5': (47.077,151.642,85.093)
O3': (49.532,148.083,83.582)
OP2: (45.062,152.974,84.565)
C3': (49.692,148.976,84.663)
C1': (50.900,150.688,85.706)
C5': (47.523,150.297,84.822)
O4': (49.735,151.281,85.157)
C8: (49.579,150.844,87.879)
O2': (51.795,149.715,83.706)
C6: (51.363,148.926,90.210)
C5: (50.765,149.658,89.172)
C4: (51.421,149.674,87.962)
P: (46.346,152.515,83.982)
C4': (48.980,150.292,84.413)
C2': (51.126,149.407,84.905)
C2: (53.046,148.416,88.720)
N1: (52.526,148.302,89.944)
N3: (52.580,149.072,87.666)
N6: (50.851,148.816,91.437)
N7: (49.604,150.410,89.108)
N9: (50.642,150.424,87.123)
O5': (47.077,151.642,85.093)
O3': (49.532,148.083,83.582)
C4: (55.828,146.808,91.368)
N3: (54.543,147.086,91.788)
OP1: (59.699,145.161,97.799)
OP2: (58.252,143.183,98.563)
C2: (54.085,147.110,93.080)
C1': (54.590,146.799,95.442)
C3': (54.464,145.675,97.507)
O5': (57.312,145.033,97.155)
O4': (55.625,147.331,96.238)
C5': (56.969,146.188,97.920)
P: (58.607,144.192,97.528)
C4': (55.598,146.692,97.546)
C2': (54.321,145.411,96.012)
O2': (53.038,144.981,95.625)
N1: (55.027,146.806,94.041)
O4: (56.099,146.844,90.164)
O2: (52.936,147.383,93.349)
C6: (56.325,146.519,93.692)
C5: (56.748,146.513,92.425)
O3': (53.313,146.333,97.996)
N3: (54.543,147.086,91.788)
OP1: (59.699,145.161,97.799)
OP2: (58.252,143.183,98.563)
C2: (54.085,147.110,93.080)
C1': (54.590,146.799,95.442)
C3': (54.464,145.675,97.507)
O5': (57.312,145.033,97.155)
O4': (55.625,147.331,96.238)
C5': (56.969,146.188,97.920)
P: (58.607,144.192,97.528)
C4': (55.598,146.692,97.546)
C2': (54.321,145.411,96.012)
O2': (53.038,144.981,95.625)
N1: (55.027,146.806,94.041)
O4: (56.099,146.844,90.164)
O2: (52.936,147.383,93.349)
C6: (56.325,146.519,93.692)
C5: (56.748,146.513,92.425)
O3': (53.313,146.333,97.996)
Image (generated by PyMOL):