Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11261:11132
Extra
PDB:
ATOM 1 O3' C A1260 48.869 8.609 4.590 1.00 47.00 O
ATOM 2 P A A1261 50.326 8.707 5.196 1.00 48.26 P
ATOM 3 OP1 A A1261 51.224 9.027 4.097 1.00 48.68 O
ATOM 4 OP2 A A1261 50.544 7.486 5.973 1.00 47.87 O
ATOM 5 O5' A A1261 50.237 9.941 6.162 1.00 48.02 O
ATOM 6 C5' A A1261 49.166 10.083 7.053 1.00 47.73 C
ATOM 7 C4' A A1261 49.653 10.260 8.439 1.00 47.25 C
ATOM 8 O4' A A1261 48.539 10.706 9.257 1.00 47.03 O
ATOM 9 C3' A A1261 50.129 8.983 9.075 1.00 46.90 C
ATOM 10 O3' A A1261 50.905 9.303 10.230 1.00 46.53 O
ATOM 11 C2' A A1261 48.819 8.423 9.535 1.00 46.72 C
ATOM 12 O2' A A1261 48.935 7.372 10.465 1.00 46.31 O
ATOM 13 C1' A A1261 48.228 9.690 10.163 1.00 46.63 C
ATOM 14 N9 A A1261 46.786 9.644 10.376 1.00 46.59 N
ATOM 15 C8 A A1261 46.173 9.936 11.559 1.00 46.24 C
ATOM 16 N7 A A1261 44.891 9.746 11.538 1.00 46.27 N
ATOM 17 C5 A A1261 44.645 9.275 10.245 1.00 46.67 C
ATOM 18 C6 A A1261 43.477 8.870 9.567 1.00 46.91 C
ATOM 19 N6 A A1261 42.266 8.900 10.120 1.00 46.78 N
ATOM 20 N1 A A1261 43.582 8.431 8.299 1.00 47.31 N
ATOM 21 C2 A A1261 44.765 8.424 7.715 1.00 47.47 C
ATOM 22 N3 A A1261 45.919 8.787 8.245 1.00 47.27 N
ATOM 23 C4 A A1261 45.807 9.206 9.516 1.00 46.87 C
ATOM 24 P A A1262 52.501 9.406 10.144 1.00 40.04 P
ATOM 25 OP1 A A1262 52.824 10.828 9.788 1.00 40.30 O
ATOM 26 OP2 A A1262 52.960 8.291 9.230 1.00 40.25 O
ATOM 27 O5' A A1262 52.959 9.112 11.653 1.00 39.52 O
TER
ATOM 1 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 2 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 3 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 4 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 5 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
ATOM 6 C5' U B1132 36.483 3.993 4.479 1.00 43.97 C
ATOM 7 C4' U B1132 36.808 4.716 5.751 1.00 43.51 C
ATOM 8 O4' U B1132 38.173 4.451 6.140 1.00 43.25 O
ATOM 9 C3' U B1132 36.737 6.228 5.722 1.00 43.63 C
ATOM 10 O3' U B1132 35.401 6.743 5.724 1.00 43.78 O
ATOM 11 C2' U B1132 37.554 6.585 6.961 1.00 43.14 C
ATOM 12 O2' U B1132 36.826 6.350 8.165 1.00 42.73 O
ATOM 13 C1' U B1132 38.666 5.546 6.879 1.00 43.01 C
ATOM 14 N1 U B1132 39.866 6.086 6.213 1.00 43.22 N
ATOM 15 C2 U B1132 40.642 6.958 6.953 1.00 42.97 C
ATOM 16 O2 U B1132 40.399 7.321 8.080 1.00 42.60 O
ATOM 17 N3 U B1132 41.741 7.426 6.296 1.00 43.18 N
ATOM 18 C4 U B1132 42.139 7.130 5.019 1.00 43.62 C
ATOM 19 O4 U B1132 43.153 7.679 4.601 1.00 43.77 O
ATOM 20 C5 U B1132 41.312 6.209 4.318 1.00 43.86 C
ATOM 21 C6 U B1132 40.232 5.740 4.930 1.00 43.65 C
ATOM 22 P C B1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 23 OP1 C B1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 24 OP2 C B1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 25 O5' C B1133 35.486 9.203 6.083 1.00 54.03 O
TER
ATOM 2 P A A1261 50.326 8.707 5.196 1.00 48.26 P
ATOM 3 OP1 A A1261 51.224 9.027 4.097 1.00 48.68 O
ATOM 4 OP2 A A1261 50.544 7.486 5.973 1.00 47.87 O
ATOM 5 O5' A A1261 50.237 9.941 6.162 1.00 48.02 O
ATOM 6 C5' A A1261 49.166 10.083 7.053 1.00 47.73 C
ATOM 7 C4' A A1261 49.653 10.260 8.439 1.00 47.25 C
ATOM 8 O4' A A1261 48.539 10.706 9.257 1.00 47.03 O
ATOM 9 C3' A A1261 50.129 8.983 9.075 1.00 46.90 C
ATOM 10 O3' A A1261 50.905 9.303 10.230 1.00 46.53 O
ATOM 11 C2' A A1261 48.819 8.423 9.535 1.00 46.72 C
ATOM 12 O2' A A1261 48.935 7.372 10.465 1.00 46.31 O
ATOM 13 C1' A A1261 48.228 9.690 10.163 1.00 46.63 C
ATOM 14 N9 A A1261 46.786 9.644 10.376 1.00 46.59 N
ATOM 15 C8 A A1261 46.173 9.936 11.559 1.00 46.24 C
ATOM 16 N7 A A1261 44.891 9.746 11.538 1.00 46.27 N
ATOM 17 C5 A A1261 44.645 9.275 10.245 1.00 46.67 C
ATOM 18 C6 A A1261 43.477 8.870 9.567 1.00 46.91 C
ATOM 19 N6 A A1261 42.266 8.900 10.120 1.00 46.78 N
ATOM 20 N1 A A1261 43.582 8.431 8.299 1.00 47.31 N
ATOM 21 C2 A A1261 44.765 8.424 7.715 1.00 47.47 C
ATOM 22 N3 A A1261 45.919 8.787 8.245 1.00 47.27 N
ATOM 23 C4 A A1261 45.807 9.206 9.516 1.00 46.87 C
ATOM 24 P A A1262 52.501 9.406 10.144 1.00 40.04 P
ATOM 25 OP1 A A1262 52.824 10.828 9.788 1.00 40.30 O
ATOM 26 OP2 A A1262 52.960 8.291 9.230 1.00 40.25 O
ATOM 27 O5' A A1262 52.959 9.112 11.653 1.00 39.52 O
TER
ATOM 1 O3' C B1131 37.648 2.466 1.953 1.00 49.59 O
ATOM 2 P U B1132 36.974 3.912 1.941 1.00 44.93 P
ATOM 3 OP1 U B1132 35.541 3.682 1.749 1.00 45.11 O
ATOM 4 OP2 U B1132 37.708 4.729 0.941 1.00 45.33 O
ATOM 5 O5' U B1132 37.236 4.475 3.399 1.00 44.36 O
ATOM 6 C5' U B1132 36.483 3.993 4.479 1.00 43.97 C
ATOM 7 C4' U B1132 36.808 4.716 5.751 1.00 43.51 C
ATOM 8 O4' U B1132 38.173 4.451 6.140 1.00 43.25 O
ATOM 9 C3' U B1132 36.737 6.228 5.722 1.00 43.63 C
ATOM 10 O3' U B1132 35.401 6.743 5.724 1.00 43.78 O
ATOM 11 C2' U B1132 37.554 6.585 6.961 1.00 43.14 C
ATOM 12 O2' U B1132 36.826 6.350 8.165 1.00 42.73 O
ATOM 13 C1' U B1132 38.666 5.546 6.879 1.00 43.01 C
ATOM 14 N1 U B1132 39.866 6.086 6.213 1.00 43.22 N
ATOM 15 C2 U B1132 40.642 6.958 6.953 1.00 42.97 C
ATOM 16 O2 U B1132 40.399 7.321 8.080 1.00 42.60 O
ATOM 17 N3 U B1132 41.741 7.426 6.296 1.00 43.18 N
ATOM 18 C4 U B1132 42.139 7.130 5.019 1.00 43.62 C
ATOM 19 O4 U B1132 43.153 7.679 4.601 1.00 43.77 O
ATOM 20 C5 U B1132 41.312 6.209 4.318 1.00 43.86 C
ATOM 21 C6 U B1132 40.232 5.740 4.930 1.00 43.65 C
ATOM 22 P C B1133 35.057 8.148 4.993 1.00 54.38 P
ATOM 23 OP1 C B1133 33.595 8.204 4.786 1.00 54.59 O
ATOM 24 OP2 C B1133 35.944 8.257 3.816 1.00 54.77 O
ATOM 25 O5' C B1133 35.486 9.203 6.083 1.00 54.03 O
TER
Atoms:
OP1: (51.224,9.027,4.097)
OP2: (50.544,7.486,5.973)
C3': (50.129,8.983,9.075)
C1': (48.228,9.690,10.163)
C5': (49.166,10.083,7.053)
O4': (48.539,10.706,9.257)
C8: (46.173,9.936,11.559)
O2': (48.935,7.372,10.465)
C6: (43.477,8.870,9.567)
C5: (44.645,9.275,10.245)
C4: (45.807,9.206,9.516)
P: (50.326,8.707,5.196)
C4': (49.653,10.260,8.439)
C2': (48.819,8.423,9.535)
C2: (44.765,8.424,7.715)
N1: (43.582,8.431,8.299)
N3: (45.919,8.787,8.245)
N6: (42.266,8.900,10.120)
N7: (44.891,9.746,11.538)
N9: (46.786,9.644,10.376)
O5': (50.237,9.941,6.162)
O3': (50.905,9.303,10.230)
OP2: (50.544,7.486,5.973)
C3': (50.129,8.983,9.075)
C1': (48.228,9.690,10.163)
C5': (49.166,10.083,7.053)
O4': (48.539,10.706,9.257)
C8: (46.173,9.936,11.559)
O2': (48.935,7.372,10.465)
C6: (43.477,8.870,9.567)
C5: (44.645,9.275,10.245)
C4: (45.807,9.206,9.516)
P: (50.326,8.707,5.196)
C4': (49.653,10.260,8.439)
C2': (48.819,8.423,9.535)
C2: (44.765,8.424,7.715)
N1: (43.582,8.431,8.299)
N3: (45.919,8.787,8.245)
N6: (42.266,8.900,10.120)
N7: (44.891,9.746,11.538)
N9: (46.786,9.644,10.376)
O5': (50.237,9.941,6.162)
O3': (50.905,9.303,10.230)
C4: (42.139,7.130,5.019)
N3: (41.741,7.426,6.296)
OP1: (35.541,3.682,1.749)
OP2: (37.708,4.729,0.941)
C2: (40.642,6.958,6.953)
C1': (38.666,5.546,6.879)
C3': (36.737,6.228,5.722)
O5': (37.236,4.475,3.399)
O4': (38.173,4.451,6.140)
C5': (36.483,3.993,4.479)
P: (36.974,3.912,1.941)
C4': (36.808,4.716,5.751)
C2': (37.554,6.585,6.961)
O2': (36.826,6.350,8.165)
N1: (39.866,6.086,6.213)
O4: (43.153,7.679,4.601)
O2: (40.399,7.321,8.080)
C6: (40.232,5.740,4.930)
C5: (41.312,6.209,4.318)
O3': (35.401,6.743,5.724)
N3: (41.741,7.426,6.296)
OP1: (35.541,3.682,1.749)
OP2: (37.708,4.729,0.941)
C2: (40.642,6.958,6.953)
C1': (38.666,5.546,6.879)
C3': (36.737,6.228,5.722)
O5': (37.236,4.475,3.399)
O4': (38.173,4.451,6.140)
C5': (36.483,3.993,4.479)
P: (36.974,3.912,1.941)
C4': (36.808,4.716,5.751)
C2': (37.554,6.585,6.961)
O2': (36.826,6.350,8.165)
N1: (39.866,6.086,6.213)
O4: (43.153,7.679,4.601)
O2: (40.399,7.321,8.080)
C6: (40.232,5.740,4.930)
C5: (41.312,6.209,4.318)
O3': (35.401,6.743,5.724)
Image (generated by PyMOL):