ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 2VQF:A541:A856

Extra

PDB:
ATOM 1 O3' C A 540 149.952 98.432 -15.223 1.00 55.85 O
ATOM 2 P A A 541 148.775 99.180 -14.402 1.00 54.53 P
ATOM 3 OP1 A A 541 149.147 99.271 -12.942 1.00 52.11 O
ATOM 4 OP2 A A 541 147.485 98.575 -14.782 1.00 50.49 O
ATOM 5 O5' A A 541 148.857 100.653 -14.995 1.00 53.53 O
ATOM 6 C5' A A 541 148.296 101.769 -14.291 1.00 53.67 C
ATOM 7 C4' A A 541 148.693 103.061 -14.954 1.00 53.11 C
ATOM 8 O4' A A 541 149.990 103.488 -14.524 1.00 54.13 O
ATOM 9 C3' A A 541 148.790 103.030 -16.461 1.00 53.34 C
ATOM 10 O3' A A 541 147.508 103.272 -16.907 1.00 55.16 O
ATOM 11 C2' A A 541 149.717 104.203 -16.788 1.00 54.48 C
ATOM 12 O2' A A 541 149.005 105.377 -17.159 1.00 55.39 O
ATOM 13 C1' A A 541 150.513 104.378 -15.481 1.00 54.46 C
ATOM 14 N9 A A 541 151.971 104.224 -15.494 1.00 54.82 N
ATOM 15 C8 A A 541 152.840 104.925 -14.693 1.00 57.16 C
ATOM 16 N7 A A 541 154.101 104.626 -14.883 1.00 57.67 N
ATOM 17 C5 A A 541 154.062 103.661 -15.877 1.00 57.54 C
ATOM 18 C6 A A 541 155.068 102.955 -16.526 1.00 57.63 C
ATOM 19 N6 A A 541 156.366 103.138 -16.282 1.00 58.59 N
ATOM 20 N1 A A 541 154.699 102.050 -17.455 1.00 57.66 N
ATOM 21 C2 A A 541 153.402 101.890 -17.714 1.00 55.01 C
ATOM 22 N3 A A 541 152.362 102.505 -17.184 1.00 56.34 N
ATOM 23 C4 A A 541 152.759 103.393 -16.256 1.00 57.03 C
ATOM 24 P C A 542 147.058 102.788 -18.353 1.00 57.72 P
ATOM 25 OP1 C A 542 147.586 101.412 -18.517 1.00 58.61 O
ATOM 26 OP2 C A 542 147.415 103.887 -19.319 1.00 60.39 O
ATOM 27 O5' C A 542 145.478 102.693 -18.195 1.00 57.72 O
TER

ATOM 1 O3' C B 855 162.623 98.160 -22.860 1.00 52.90 O
ATOM 2 P U B 856 162.548 96.863 -21.930 1.00 55.17 P
ATOM 3 OP1 U B 856 163.960 96.432 -21.682 1.00 54.29 O
ATOM 4 OP2 U B 856 161.537 95.935 -22.515 1.00 53.71 O
ATOM 5 O5' U B 856 162.000 97.441 -20.602 1.00 55.28 O
ATOM 6 C5' U B 856 162.713 98.462 -19.938 1.00 54.86 C
ATOM 7 C4' U B 856 162.069 98.739 -18.631 1.00 55.48 C
ATOM 8 O4' U B 856 160.804 99.416 -18.868 1.00 55.99 O
ATOM 9 C3' U B 856 161.774 97.504 -17.791 1.00 54.94 C
ATOM 10 O3' U B 856 162.102 97.794 -16.459 1.00 56.53 O
ATOM 11 C2' U B 856 160.260 97.331 -17.945 1.00 55.41 C
ATOM 12 O2' U B 856 159.645 96.764 -16.805 1.00 54.42 O
ATOM 13 C1' U B 856 159.793 98.778 -18.126 1.00 56.26 C
ATOM 14 N1 U B 856 158.493 98.990 -18.793 1.00 57.33 N
ATOM 15 C2 U B 856 157.695 100.044 -18.347 1.00 57.48 C
ATOM 16 O2 U B 856 158.052 100.844 -17.501 1.00 58.49 O
ATOM 17 N3 U B 856 156.465 100.134 -18.944 1.00 57.68 N
ATOM 18 C4 U B 856 155.962 99.325 -19.937 1.00 58.13 C
ATOM 19 O4 U B 856 154.796 99.477 -20.312 1.00 58.80 O
ATOM 20 C5 U B 856 156.855 98.305 -20.378 1.00 57.81 C
ATOM 21 C6 U B 856 158.057 98.172 -19.806 1.00 57.65 C
ATOM 22 P G B 857 163.039 96.791 -15.618 1.00 58.07 P
ATOM 23 OP1 G B 857 162.963 95.437 -16.255 1.00 57.17 O
ATOM 24 OP2 G B 857 162.652 96.964 -14.184 1.00 60.39 O
ATOM 25 O5' G B 857 164.491 97.361 -15.802 1.00 53.83 O
TER

Atoms:
OP1: (149.147,99.271,-12.942)
OP2: (147.485,98.575,-14.782)
C3': (148.790,103.030,-16.461)
C1': (150.513,104.378,-15.481)
C5': (148.296,101.769,-14.291)
O4': (149.990,103.488,-14.524)
C8: (152.840,104.925,-14.693)
O2': (149.005,105.377,-17.159)
C6: (155.068,102.955,-16.526)
C5: (154.062,103.661,-15.877)
C4: (152.759,103.393,-16.256)
P: (148.775,99.180,-14.402)
C4': (148.693,103.061,-14.954)
C2': (149.717,104.203,-16.788)
C2: (153.402,101.890,-17.714)
N1: (154.699,102.050,-17.455)
N3: (152.362,102.505,-17.184)
N6: (156.366,103.138,-16.282)
N7: (154.101,104.626,-14.883)
N9: (151.971,104.224,-15.494)
O5': (148.857,100.653,-14.995)
O3': (147.508,103.272,-16.907)
C4: (155.962,99.325,-19.937)
N3: (156.465,100.134,-18.944)
OP1: (163.960,96.432,-21.682)
OP2: (161.537,95.935,-22.515)
C2: (157.695,100.044,-18.347)
C1': (159.793,98.778,-18.126)
C3': (161.774,97.504,-17.791)
O5': (162.000,97.441,-20.602)
O4': (160.804,99.416,-18.868)
C5': (162.713,98.462,-19.938)
P: (162.548,96.863,-21.930)
C4': (162.069,98.739,-18.631)
C2': (160.260,97.331,-17.945)
O2': (159.645,96.764,-16.805)
N1: (158.493,98.990,-18.793)
O4: (154.796,99.477,-20.312)
O2: (158.052,100.844,-17.501)
C6: (158.057,98.172,-19.806)
C5: (156.855,98.305,-20.378)
O3': (162.102,97.794,-16.459)
Image (generated by PyMOL):
PyMOL image
show in jmol