Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12408:12465
Extra
PDB:
ATOM 1 O3' U A2407 10.371 -69.424 61.537 1.00 59.91 O
ATOM 2 P A A2408 9.005 -69.417 60.697 1.00 51.67 P
ATOM 3 OP1 A A2408 7.994 -68.754 61.530 1.00 51.50 O
ATOM 4 OP2 A A2408 8.776 -70.782 60.256 1.00 52.25 O
ATOM 5 O5' A A2408 9.353 -68.505 59.450 1.00 51.38 O
ATOM 6 C5' A A2408 9.936 -69.036 58.273 1.00 51.60 C
ATOM 7 C4' A A2408 10.527 -67.930 57.453 1.00 51.20 C
ATOM 8 O4' A A2408 11.622 -67.339 58.209 1.00 50.77 O
ATOM 9 C3' A A2408 11.126 -68.334 56.104 1.00 51.40 C
ATOM 10 O3' A A2408 11.159 -67.182 55.237 1.00 51.07 O
ATOM 11 C2' A A2408 12.562 -68.632 56.495 1.00 51.29 C
ATOM 12 O2' A A2408 13.473 -68.600 55.413 1.00 51.28 O
ATOM 13 C1' A A2408 12.819 -67.479 57.474 1.00 50.74 C
ATOM 14 N9 A A2408 13.950 -67.697 58.390 1.00 50.61 N
ATOM 15 C8 A A2408 14.906 -66.754 58.665 1.00 50.14 C
ATOM 16 N7 A A2408 15.893 -67.148 59.435 1.00 50.11 N
ATOM 17 C5 A A2408 15.571 -68.461 59.675 1.00 50.60 C
ATOM 18 C6 A A2408 16.237 -69.417 60.419 1.00 50.83 C
ATOM 19 N6 A A2408 17.353 -69.176 61.068 1.00 50.58 N
ATOM 20 N1 A A2408 15.679 -70.626 60.479 1.00 51.34 N
ATOM 21 C2 A A2408 14.548 -70.837 59.811 1.00 51.59 C
ATOM 22 N3 A A2408 13.839 -70.019 59.061 1.00 51.42 N
ATOM 23 C4 A A2408 14.394 -68.825 59.039 1.00 50.91 C
ATOM 24 P A A2409 9.877 -66.704 54.384 1.00 55.67 P
ATOM 25 OP1 A A2409 8.970 -66.010 55.331 1.00 55.44 O
ATOM 26 OP2 A A2409 9.372 -67.890 53.617 1.00 56.26 O
ATOM 27 O5' A A2409 10.519 -65.630 53.382 1.00 55.32 O
TER
ATOM 1 O3' U B2464 19.057 -79.089 61.587 1.00 64.36 O
ATOM 2 P U B2465 19.214 -78.805 63.161 1.00 61.58 P
ATOM 3 OP1 U B2465 20.073 -79.890 63.698 1.00 61.96 O
ATOM 4 OP2 U B2465 17.839 -78.637 63.719 1.00 61.60 O
ATOM 5 O5' U B2465 19.999 -77.407 63.208 1.00 60.92 O
ATOM 6 C5' U B2465 21.290 -77.262 62.620 1.00 60.79 C
ATOM 7 C4' U B2465 21.649 -75.807 62.395 1.00 60.17 C
ATOM 8 O4' U B2465 20.596 -75.170 61.629 1.00 60.03 O
ATOM 9 C3' U B2465 21.809 -74.968 63.651 1.00 59.74 C
ATOM 10 O3' U B2465 22.736 -73.915 63.398 1.00 59.26 O
ATOM 11 C2' U B2465 20.427 -74.369 63.823 1.00 59.59 C
ATOM 12 O2' U B2465 20.399 -73.183 64.592 1.00 59.08 O
ATOM 13 C1' U B2465 20.040 -74.106 62.377 1.00 59.60 C
ATOM 14 N1 U B2465 18.590 -74.091 62.137 1.00 59.73 N
ATOM 15 C2 U B2465 18.003 -72.905 61.758 1.00 59.33 C
ATOM 16 O2 U B2465 18.608 -71.869 61.629 1.00 58.88 O
ATOM 17 N3 U B2465 16.653 -72.992 61.528 1.00 59.51 N
ATOM 18 C4 U B2465 15.849 -74.120 61.609 1.00 60.04 C
ATOM 19 O4 U B2465 14.644 -74.038 61.374 1.00 60.14 O
ATOM 20 C5 U B2465 16.554 -75.304 62.004 1.00 60.42 C
ATOM 21 C6 U B2465 17.866 -75.251 62.253 1.00 60.26 C
ATOM 22 P G B2466 24.261 -74.043 63.901 1.00 56.09 P
ATOM 23 OP1 G B2466 24.621 -75.494 63.863 1.00 56.66 O
ATOM 24 OP2 G B2466 24.330 -73.334 65.208 1.00 55.74 O
ATOM 25 O5' G B2466 25.082 -73.255 62.748 1.00 55.78 O
TER
ATOM 2 P A A2408 9.005 -69.417 60.697 1.00 51.67 P
ATOM 3 OP1 A A2408 7.994 -68.754 61.530 1.00 51.50 O
ATOM 4 OP2 A A2408 8.776 -70.782 60.256 1.00 52.25 O
ATOM 5 O5' A A2408 9.353 -68.505 59.450 1.00 51.38 O
ATOM 6 C5' A A2408 9.936 -69.036 58.273 1.00 51.60 C
ATOM 7 C4' A A2408 10.527 -67.930 57.453 1.00 51.20 C
ATOM 8 O4' A A2408 11.622 -67.339 58.209 1.00 50.77 O
ATOM 9 C3' A A2408 11.126 -68.334 56.104 1.00 51.40 C
ATOM 10 O3' A A2408 11.159 -67.182 55.237 1.00 51.07 O
ATOM 11 C2' A A2408 12.562 -68.632 56.495 1.00 51.29 C
ATOM 12 O2' A A2408 13.473 -68.600 55.413 1.00 51.28 O
ATOM 13 C1' A A2408 12.819 -67.479 57.474 1.00 50.74 C
ATOM 14 N9 A A2408 13.950 -67.697 58.390 1.00 50.61 N
ATOM 15 C8 A A2408 14.906 -66.754 58.665 1.00 50.14 C
ATOM 16 N7 A A2408 15.893 -67.148 59.435 1.00 50.11 N
ATOM 17 C5 A A2408 15.571 -68.461 59.675 1.00 50.60 C
ATOM 18 C6 A A2408 16.237 -69.417 60.419 1.00 50.83 C
ATOM 19 N6 A A2408 17.353 -69.176 61.068 1.00 50.58 N
ATOM 20 N1 A A2408 15.679 -70.626 60.479 1.00 51.34 N
ATOM 21 C2 A A2408 14.548 -70.837 59.811 1.00 51.59 C
ATOM 22 N3 A A2408 13.839 -70.019 59.061 1.00 51.42 N
ATOM 23 C4 A A2408 14.394 -68.825 59.039 1.00 50.91 C
ATOM 24 P A A2409 9.877 -66.704 54.384 1.00 55.67 P
ATOM 25 OP1 A A2409 8.970 -66.010 55.331 1.00 55.44 O
ATOM 26 OP2 A A2409 9.372 -67.890 53.617 1.00 56.26 O
ATOM 27 O5' A A2409 10.519 -65.630 53.382 1.00 55.32 O
TER
ATOM 1 O3' U B2464 19.057 -79.089 61.587 1.00 64.36 O
ATOM 2 P U B2465 19.214 -78.805 63.161 1.00 61.58 P
ATOM 3 OP1 U B2465 20.073 -79.890 63.698 1.00 61.96 O
ATOM 4 OP2 U B2465 17.839 -78.637 63.719 1.00 61.60 O
ATOM 5 O5' U B2465 19.999 -77.407 63.208 1.00 60.92 O
ATOM 6 C5' U B2465 21.290 -77.262 62.620 1.00 60.79 C
ATOM 7 C4' U B2465 21.649 -75.807 62.395 1.00 60.17 C
ATOM 8 O4' U B2465 20.596 -75.170 61.629 1.00 60.03 O
ATOM 9 C3' U B2465 21.809 -74.968 63.651 1.00 59.74 C
ATOM 10 O3' U B2465 22.736 -73.915 63.398 1.00 59.26 O
ATOM 11 C2' U B2465 20.427 -74.369 63.823 1.00 59.59 C
ATOM 12 O2' U B2465 20.399 -73.183 64.592 1.00 59.08 O
ATOM 13 C1' U B2465 20.040 -74.106 62.377 1.00 59.60 C
ATOM 14 N1 U B2465 18.590 -74.091 62.137 1.00 59.73 N
ATOM 15 C2 U B2465 18.003 -72.905 61.758 1.00 59.33 C
ATOM 16 O2 U B2465 18.608 -71.869 61.629 1.00 58.88 O
ATOM 17 N3 U B2465 16.653 -72.992 61.528 1.00 59.51 N
ATOM 18 C4 U B2465 15.849 -74.120 61.609 1.00 60.04 C
ATOM 19 O4 U B2465 14.644 -74.038 61.374 1.00 60.14 O
ATOM 20 C5 U B2465 16.554 -75.304 62.004 1.00 60.42 C
ATOM 21 C6 U B2465 17.866 -75.251 62.253 1.00 60.26 C
ATOM 22 P G B2466 24.261 -74.043 63.901 1.00 56.09 P
ATOM 23 OP1 G B2466 24.621 -75.494 63.863 1.00 56.66 O
ATOM 24 OP2 G B2466 24.330 -73.334 65.208 1.00 55.74 O
ATOM 25 O5' G B2466 25.082 -73.255 62.748 1.00 55.78 O
TER
Atoms:
OP1: (7.994,-68.754,61.530)
OP2: (8.776,-70.782,60.256)
C3': (11.126,-68.334,56.104)
C1': (12.819,-67.479,57.474)
C5': (9.936,-69.036,58.273)
O4': (11.622,-67.339,58.209)
C8: (14.906,-66.754,58.665)
O2': (13.473,-68.600,55.413)
C6: (16.237,-69.417,60.419)
C5: (15.571,-68.461,59.675)
C4: (14.394,-68.825,59.039)
P: (9.005,-69.417,60.697)
C4': (10.527,-67.930,57.453)
C2': (12.562,-68.632,56.495)
C2: (14.548,-70.837,59.811)
N1: (15.679,-70.626,60.479)
N3: (13.839,-70.019,59.061)
N6: (17.353,-69.176,61.068)
N7: (15.893,-67.148,59.435)
N9: (13.950,-67.697,58.390)
O5': (9.353,-68.505,59.450)
O3': (11.159,-67.182,55.237)
OP2: (8.776,-70.782,60.256)
C3': (11.126,-68.334,56.104)
C1': (12.819,-67.479,57.474)
C5': (9.936,-69.036,58.273)
O4': (11.622,-67.339,58.209)
C8: (14.906,-66.754,58.665)
O2': (13.473,-68.600,55.413)
C6: (16.237,-69.417,60.419)
C5: (15.571,-68.461,59.675)
C4: (14.394,-68.825,59.039)
P: (9.005,-69.417,60.697)
C4': (10.527,-67.930,57.453)
C2': (12.562,-68.632,56.495)
C2: (14.548,-70.837,59.811)
N1: (15.679,-70.626,60.479)
N3: (13.839,-70.019,59.061)
N6: (17.353,-69.176,61.068)
N7: (15.893,-67.148,59.435)
N9: (13.950,-67.697,58.390)
O5': (9.353,-68.505,59.450)
O3': (11.159,-67.182,55.237)
C4: (15.849,-74.120,61.609)
N3: (16.653,-72.992,61.528)
OP1: (20.073,-79.890,63.698)
OP2: (17.839,-78.637,63.719)
C2: (18.003,-72.905,61.758)
C1': (20.040,-74.106,62.377)
C3': (21.809,-74.968,63.651)
O5': (19.999,-77.407,63.208)
O4': (20.596,-75.170,61.629)
C5': (21.290,-77.262,62.620)
P: (19.214,-78.805,63.161)
C4': (21.649,-75.807,62.395)
C2': (20.427,-74.369,63.823)
O2': (20.399,-73.183,64.592)
N1: (18.590,-74.091,62.137)
O4: (14.644,-74.038,61.374)
O2: (18.608,-71.869,61.629)
C6: (17.866,-75.251,62.253)
C5: (16.554,-75.304,62.004)
O3': (22.736,-73.915,63.398)
N3: (16.653,-72.992,61.528)
OP1: (20.073,-79.890,63.698)
OP2: (17.839,-78.637,63.719)
C2: (18.003,-72.905,61.758)
C1': (20.040,-74.106,62.377)
C3': (21.809,-74.968,63.651)
O5': (19.999,-77.407,63.208)
O4': (20.596,-75.170,61.629)
C5': (21.290,-77.262,62.620)
P: (19.214,-78.805,63.161)
C4': (21.649,-75.807,62.395)
C2': (20.427,-74.369,63.823)
O2': (20.399,-73.183,64.592)
N1: (18.590,-74.091,62.137)
O4: (14.644,-74.038,61.374)
O2: (18.608,-71.869,61.629)
C6: (17.866,-75.251,62.253)
C5: (16.554,-75.304,62.004)
O3': (22.736,-73.915,63.398)
Image (generated by PyMOL):