Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YFG:A57:A18
Extra
PDB:
ATOM 1 P A A 57 9.007 23.380 -32.319 1.00 19.95 P
ATOM 2 OP1 A A 57 9.751 24.670 -32.578 1.00 20.19 O
ATOM 3 OP2 A A 57 10.070 22.445 -31.868 1.00 20.03 O
ATOM 4 O5' A A 57 7.733 23.439 -31.363 1.00 20.35 O
ATOM 5 C5' A A 57 7.807 23.390 -29.943 1.00 20.99 C
ATOM 6 C4' A A 57 6.414 23.124 -29.424 1.00 21.50 C
ATOM 7 O4' A A 57 5.476 24.060 -29.889 1.00 21.66 O
ATOM 8 C3' A A 57 5.908 21.736 -29.848 1.00 21.70 C
ATOM 9 O3' A A 57 6.329 20.790 -28.851 1.00 21.51 O
ATOM 10 C2' A A 57 4.395 21.952 -29.861 1.00 22.14 C
ATOM 11 O2' A A 57 3.940 21.696 -28.537 1.00 22.55 O
ATOM 12 C1' A A 57 4.219 23.400 -30.162 1.00 22.17 C
ATOM 13 N9 A A 57 3.690 23.764 -31.459 1.00 22.58 N
ATOM 14 C8 A A 57 4.378 24.424 -32.469 1.00 22.83 C
ATOM 15 N7 A A 57 3.662 24.641 -33.534 1.00 22.77 N
ATOM 16 C5 A A 57 2.428 24.099 -33.234 1.00 22.66 C
ATOM 17 C6 A A 57 1.240 24.030 -33.998 1.00 22.89 C
ATOM 18 N6 A A 57 1.137 24.523 -35.227 1.00 23.39 N
ATOM 19 N1 A A 57 0.199 23.410 -33.384 1.00 22.75 N
ATOM 20 C2 A A 57 0.330 22.907 -32.128 1.00 22.87 C
ATOM 21 N3 A A 57 1.410 22.947 -31.363 1.00 22.75 N
ATOM 22 C4 A A 57 2.434 23.557 -31.978 1.00 22.68 C
ATOM 23 P A A 58 6.442 19.273 -29.274 1.00 21.82 P
ATOM 24 OP1 A A 58 6.727 18.387 -28.100 1.00 22.25 O
ATOM 25 OP2 A A 58 7.608 19.047 -30.189 1.00 21.84 O
ATOM 26 O5' A A 58 4.964 19.017 -29.807 1.00 21.66 O
TER
ATOM 1 O3' G B 17 3.986 24.106 -42.941 1.00 32.68 O
ATOM 2 P A B 18 3.338 25.414 -42.286 1.00 35.16 P
ATOM 3 OP1 A B 18 2.015 25.668 -42.910 1.00 35.16 O
ATOM 4 OP2 A B 18 4.343 26.505 -42.358 1.00 35.07 O
ATOM 5 O5' A B 18 3.128 24.979 -40.757 1.00 36.64 O
ATOM 6 C5' A B 18 2.097 25.650 -39.970 1.00 38.78 C
ATOM 7 C4' A B 18 2.534 25.584 -38.509 1.00 40.65 C
ATOM 8 O4' A B 18 2.955 24.233 -38.250 1.00 40.69 O
ATOM 9 C3' A B 18 3.702 26.478 -38.165 1.00 42.14 C
ATOM 10 O3' A B 18 3.204 27.755 -37.768 1.00 44.77 O
ATOM 11 C2' A B 18 4.383 25.723 -37.042 1.00 41.52 C
ATOM 12 O2' A B 18 3.725 26.024 -35.848 1.00 41.66 O
ATOM 13 C1' A B 18 4.115 24.249 -37.430 1.00 40.70 C
ATOM 14 N9 A B 18 5.157 23.633 -38.263 1.00 40.25 N
ATOM 15 C8 A B 18 6.031 24.257 -39.105 1.00 40.13 C
ATOM 16 N7 A B 18 6.827 23.435 -39.724 1.00 40.08 N
ATOM 17 C5 A B 18 6.445 22.188 -39.257 1.00 39.92 C
ATOM 18 C6 A B 18 6.909 20.890 -39.530 1.00 39.79 C
ATOM 19 N6 A B 18 7.910 20.633 -40.392 1.00 39.66 N
ATOM 20 N1 A B 18 6.306 19.879 -38.887 1.00 39.93 N
ATOM 21 C2 A B 18 5.305 20.143 -38.032 1.00 39.99 C
ATOM 22 N3 A B 18 4.792 21.317 -37.705 1.00 40.00 N
ATOM 23 C4 A B 18 5.421 22.293 -38.361 1.00 39.97 C
ATOM 24 P A B 19 3.719 29.091 -38.445 1.00 47.01 P
ATOM 25 OP1 A B 19 4.364 28.777 -39.742 1.00 47.36 O
ATOM 26 OP2 A B 19 4.511 29.859 -37.461 1.00 46.96 O
ATOM 27 O5' A B 19 2.342 29.859 -38.689 1.00 48.65 O
TER
ATOM 2 OP1 A A 57 9.751 24.670 -32.578 1.00 20.19 O
ATOM 3 OP2 A A 57 10.070 22.445 -31.868 1.00 20.03 O
ATOM 4 O5' A A 57 7.733 23.439 -31.363 1.00 20.35 O
ATOM 5 C5' A A 57 7.807 23.390 -29.943 1.00 20.99 C
ATOM 6 C4' A A 57 6.414 23.124 -29.424 1.00 21.50 C
ATOM 7 O4' A A 57 5.476 24.060 -29.889 1.00 21.66 O
ATOM 8 C3' A A 57 5.908 21.736 -29.848 1.00 21.70 C
ATOM 9 O3' A A 57 6.329 20.790 -28.851 1.00 21.51 O
ATOM 10 C2' A A 57 4.395 21.952 -29.861 1.00 22.14 C
ATOM 11 O2' A A 57 3.940 21.696 -28.537 1.00 22.55 O
ATOM 12 C1' A A 57 4.219 23.400 -30.162 1.00 22.17 C
ATOM 13 N9 A A 57 3.690 23.764 -31.459 1.00 22.58 N
ATOM 14 C8 A A 57 4.378 24.424 -32.469 1.00 22.83 C
ATOM 15 N7 A A 57 3.662 24.641 -33.534 1.00 22.77 N
ATOM 16 C5 A A 57 2.428 24.099 -33.234 1.00 22.66 C
ATOM 17 C6 A A 57 1.240 24.030 -33.998 1.00 22.89 C
ATOM 18 N6 A A 57 1.137 24.523 -35.227 1.00 23.39 N
ATOM 19 N1 A A 57 0.199 23.410 -33.384 1.00 22.75 N
ATOM 20 C2 A A 57 0.330 22.907 -32.128 1.00 22.87 C
ATOM 21 N3 A A 57 1.410 22.947 -31.363 1.00 22.75 N
ATOM 22 C4 A A 57 2.434 23.557 -31.978 1.00 22.68 C
ATOM 23 P A A 58 6.442 19.273 -29.274 1.00 21.82 P
ATOM 24 OP1 A A 58 6.727 18.387 -28.100 1.00 22.25 O
ATOM 25 OP2 A A 58 7.608 19.047 -30.189 1.00 21.84 O
ATOM 26 O5' A A 58 4.964 19.017 -29.807 1.00 21.66 O
TER
ATOM 1 O3' G B 17 3.986 24.106 -42.941 1.00 32.68 O
ATOM 2 P A B 18 3.338 25.414 -42.286 1.00 35.16 P
ATOM 3 OP1 A B 18 2.015 25.668 -42.910 1.00 35.16 O
ATOM 4 OP2 A B 18 4.343 26.505 -42.358 1.00 35.07 O
ATOM 5 O5' A B 18 3.128 24.979 -40.757 1.00 36.64 O
ATOM 6 C5' A B 18 2.097 25.650 -39.970 1.00 38.78 C
ATOM 7 C4' A B 18 2.534 25.584 -38.509 1.00 40.65 C
ATOM 8 O4' A B 18 2.955 24.233 -38.250 1.00 40.69 O
ATOM 9 C3' A B 18 3.702 26.478 -38.165 1.00 42.14 C
ATOM 10 O3' A B 18 3.204 27.755 -37.768 1.00 44.77 O
ATOM 11 C2' A B 18 4.383 25.723 -37.042 1.00 41.52 C
ATOM 12 O2' A B 18 3.725 26.024 -35.848 1.00 41.66 O
ATOM 13 C1' A B 18 4.115 24.249 -37.430 1.00 40.70 C
ATOM 14 N9 A B 18 5.157 23.633 -38.263 1.00 40.25 N
ATOM 15 C8 A B 18 6.031 24.257 -39.105 1.00 40.13 C
ATOM 16 N7 A B 18 6.827 23.435 -39.724 1.00 40.08 N
ATOM 17 C5 A B 18 6.445 22.188 -39.257 1.00 39.92 C
ATOM 18 C6 A B 18 6.909 20.890 -39.530 1.00 39.79 C
ATOM 19 N6 A B 18 7.910 20.633 -40.392 1.00 39.66 N
ATOM 20 N1 A B 18 6.306 19.879 -38.887 1.00 39.93 N
ATOM 21 C2 A B 18 5.305 20.143 -38.032 1.00 39.99 C
ATOM 22 N3 A B 18 4.792 21.317 -37.705 1.00 40.00 N
ATOM 23 C4 A B 18 5.421 22.293 -38.361 1.00 39.97 C
ATOM 24 P A B 19 3.719 29.091 -38.445 1.00 47.01 P
ATOM 25 OP1 A B 19 4.364 28.777 -39.742 1.00 47.36 O
ATOM 26 OP2 A B 19 4.511 29.859 -37.461 1.00 46.96 O
ATOM 27 O5' A B 19 2.342 29.859 -38.689 1.00 48.65 O
TER
Atoms:
OP1: (9.751,24.670,-32.578)
OP2: (10.070,22.445,-31.868)
C3': (5.908,21.736,-29.848)
C1': (4.219,23.400,-30.162)
C5': (7.807,23.390,-29.943)
O4': (5.476,24.060,-29.889)
C8: (4.378,24.424,-32.469)
O2': (3.940,21.696,-28.537)
C6: (1.240,24.030,-33.998)
C5: (2.428,24.099,-33.234)
C4: (2.434,23.557,-31.978)
P: (9.007,23.380,-32.319)
C4': (6.414,23.124,-29.424)
C2': (4.395,21.952,-29.861)
C2: (0.330,22.907,-32.128)
N1: (0.199,23.410,-33.384)
N3: (1.410,22.947,-31.363)
N6: (1.137,24.523,-35.227)
N7: (3.662,24.641,-33.534)
N9: (3.690,23.764,-31.459)
O5': (7.733,23.439,-31.363)
O3': (6.329,20.790,-28.851)
OP2: (10.070,22.445,-31.868)
C3': (5.908,21.736,-29.848)
C1': (4.219,23.400,-30.162)
C5': (7.807,23.390,-29.943)
O4': (5.476,24.060,-29.889)
C8: (4.378,24.424,-32.469)
O2': (3.940,21.696,-28.537)
C6: (1.240,24.030,-33.998)
C5: (2.428,24.099,-33.234)
C4: (2.434,23.557,-31.978)
P: (9.007,23.380,-32.319)
C4': (6.414,23.124,-29.424)
C2': (4.395,21.952,-29.861)
C2: (0.330,22.907,-32.128)
N1: (0.199,23.410,-33.384)
N3: (1.410,22.947,-31.363)
N6: (1.137,24.523,-35.227)
N7: (3.662,24.641,-33.534)
N9: (3.690,23.764,-31.459)
O5': (7.733,23.439,-31.363)
O3': (6.329,20.790,-28.851)
OP1: (2.015,25.668,-42.910)
OP2: (4.343,26.505,-42.358)
C3': (3.702,26.478,-38.165)
C1': (4.115,24.249,-37.430)
C5': (2.097,25.650,-39.970)
O4': (2.955,24.233,-38.250)
C8: (6.031,24.257,-39.105)
O2': (3.725,26.024,-35.848)
C6: (6.909,20.890,-39.530)
C5: (6.445,22.188,-39.257)
C4: (5.421,22.293,-38.361)
P: (3.338,25.414,-42.286)
C4': (2.534,25.584,-38.509)
C2': (4.383,25.723,-37.042)
C2: (5.305,20.143,-38.032)
N1: (6.306,19.879,-38.887)
N3: (4.792,21.317,-37.705)
N6: (7.910,20.633,-40.392)
N7: (6.827,23.435,-39.724)
N9: (5.157,23.633,-38.263)
O5': (3.128,24.979,-40.757)
O3': (3.204,27.755,-37.768)
OP2: (4.343,26.505,-42.358)
C3': (3.702,26.478,-38.165)
C1': (4.115,24.249,-37.430)
C5': (2.097,25.650,-39.970)
O4': (2.955,24.233,-38.250)
C8: (6.031,24.257,-39.105)
O2': (3.725,26.024,-35.848)
C6: (6.909,20.890,-39.530)
C5: (6.445,22.188,-39.257)
C4: (5.421,22.293,-38.361)
P: (3.338,25.414,-42.286)
C4': (2.534,25.584,-38.509)
C2': (4.383,25.723,-37.042)
C2: (5.305,20.143,-38.032)
N1: (6.306,19.879,-38.887)
N3: (4.792,21.317,-37.705)
N6: (7.910,20.633,-40.392)
N7: (6.827,23.435,-39.724)
N9: (5.157,23.633,-38.263)
O5': (3.128,24.979,-40.757)
O3': (3.204,27.755,-37.768)
Image (generated by PyMOL):