Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D0U:A123:A121
Extra
PDB:
ATOM 1 O3' A A 122 -4.005 28.380 5.967 1.00 56.09 O
ATOM 2 P A A 123 -3.563 29.112 7.303 1.00 59.13 P
ATOM 3 OP1 A A 123 -4.752 29.619 8.027 1.00 61.93 O
ATOM 4 OP2 A A 123 -2.443 30.018 6.933 1.00 53.26 O
ATOM 5 O5' A A 123 -3.030 27.837 8.105 1.00 53.07 O
ATOM 6 C5' A A 123 -3.031 27.825 9.513 1.00 59.15 C
ATOM 7 C4' A A 123 -3.043 26.380 9.952 1.00 62.48 C
ATOM 8 O4' A A 123 -2.254 25.612 9.017 1.00 59.35 O
ATOM 9 C3' A A 123 -2.427 26.097 11.307 1.00 70.59 C
ATOM 10 O3' A A 123 -3.000 24.902 11.806 1.00 82.82 O
ATOM 11 C2' A A 123 -0.950 25.899 10.985 1.00 65.93 C
ATOM 12 O2' A A 123 -0.339 24.959 11.848 1.00 71.90 O
ATOM 13 C1' A A 123 -0.990 25.312 9.581 1.00 58.41 C
ATOM 14 N9 A A 123 0.028 25.819 8.667 1.00 53.46 N
ATOM 15 C8 A A 123 -0.078 26.925 7.877 1.00 52.62 C
ATOM 16 N7 A A 123 0.978 27.150 7.135 1.00 50.37 N
ATOM 17 C5 A A 123 1.836 26.117 7.454 1.00 48.27 C
ATOM 18 C6 A A 123 3.124 25.797 6.996 1.00 46.17 C
ATOM 19 N6 A A 123 3.771 26.530 6.085 1.00 45.83 N
ATOM 20 N1 A A 123 3.715 24.701 7.509 1.00 44.90 N
ATOM 21 C2 A A 123 3.042 23.984 8.417 1.00 47.67 C
ATOM 22 N3 A A 123 1.826 24.183 8.927 1.00 49.62 N
ATOM 23 C4 A A 123 1.268 25.282 8.396 1.00 51.15 C
ATOM 24 P U A 124 -3.519 24.890 13.317 1.00 98.58 P
ATOM 25 OP1 U A 124 -2.748 23.865 14.068 1.00 94.30 O
ATOM 26 OP2 U A 124 -4.998 24.789 13.284 1.00 88.49 O
ATOM 27 O5' U A 124 -3.072 26.368 13.788 1.00 90.26 O
TER
ATOM 1 O3' G B 120 1.254 36.133 3.766 1.00 58.80 O
ATOM 2 P G B 121 0.174 35.160 3.085 1.00 62.50 P
ATOM 3 OP1 G B 121 0.513 35.172 1.640 1.00 52.21 O
ATOM 4 OP2 G B 121 -1.194 35.478 3.574 1.00 51.90 O
ATOM 5 O5' G B 121 0.517 33.726 3.714 1.00 56.34 O
ATOM 6 C5' G B 121 1.696 33.034 3.323 1.00 52.37 C
ATOM 7 C4' G B 121 1.855 31.788 4.166 1.00 49.74 C
ATOM 8 O4' G B 121 1.988 32.171 5.551 1.00 47.79 O
ATOM 9 C3' G B 121 0.653 30.864 4.183 1.00 51.22 C
ATOM 10 O3' G B 121 0.649 30.056 3.010 1.00 49.67 O
ATOM 11 C2' G B 121 0.990 30.053 5.426 1.00 49.43 C
ATOM 12 O2' G B 121 2.005 29.107 5.155 1.00 48.91 O
ATOM 13 C1' G B 121 1.514 31.130 6.372 1.00 47.77 C
ATOM 14 N9 G B 121 0.478 31.696 7.220 1.00 50.70 N
ATOM 15 C8 G B 121 -0.284 32.801 6.931 1.00 52.77 C
ATOM 16 N7 G B 121 -1.149 33.091 7.864 1.00 52.26 N
ATOM 17 C5 G B 121 -0.946 32.119 8.830 1.00 51.43 C
ATOM 18 C6 G B 121 -1.599 31.928 10.067 1.00 55.87 C
ATOM 19 O6 G B 121 -2.510 32.606 10.560 1.00 65.87 O
ATOM 20 N1 G B 121 -1.104 30.827 10.757 1.00 55.82 N
ATOM 21 C2 G B 121 -0.099 30.014 10.299 1.00 53.89 C
ATOM 22 N2 G B 121 0.235 29.002 11.111 1.00 54.44 N
ATOM 23 N3 G B 121 0.526 30.181 9.135 1.00 51.55 N
ATOM 24 C4 G B 121 0.052 31.251 8.453 1.00 51.18 C
ATOM 25 P A B 122 -0.607 30.056 2.015 1.00 50.27 P
ATOM 26 OP1 A B 122 -0.103 29.833 0.637 1.00 49.64 O
ATOM 27 OP2 A B 122 -1.437 31.240 2.324 1.00 50.96 O
ATOM 28 O5' A B 122 -1.428 28.774 2.473 1.00 45.37 O
TER
ATOM 2 P A A 123 -3.563 29.112 7.303 1.00 59.13 P
ATOM 3 OP1 A A 123 -4.752 29.619 8.027 1.00 61.93 O
ATOM 4 OP2 A A 123 -2.443 30.018 6.933 1.00 53.26 O
ATOM 5 O5' A A 123 -3.030 27.837 8.105 1.00 53.07 O
ATOM 6 C5' A A 123 -3.031 27.825 9.513 1.00 59.15 C
ATOM 7 C4' A A 123 -3.043 26.380 9.952 1.00 62.48 C
ATOM 8 O4' A A 123 -2.254 25.612 9.017 1.00 59.35 O
ATOM 9 C3' A A 123 -2.427 26.097 11.307 1.00 70.59 C
ATOM 10 O3' A A 123 -3.000 24.902 11.806 1.00 82.82 O
ATOM 11 C2' A A 123 -0.950 25.899 10.985 1.00 65.93 C
ATOM 12 O2' A A 123 -0.339 24.959 11.848 1.00 71.90 O
ATOM 13 C1' A A 123 -0.990 25.312 9.581 1.00 58.41 C
ATOM 14 N9 A A 123 0.028 25.819 8.667 1.00 53.46 N
ATOM 15 C8 A A 123 -0.078 26.925 7.877 1.00 52.62 C
ATOM 16 N7 A A 123 0.978 27.150 7.135 1.00 50.37 N
ATOM 17 C5 A A 123 1.836 26.117 7.454 1.00 48.27 C
ATOM 18 C6 A A 123 3.124 25.797 6.996 1.00 46.17 C
ATOM 19 N6 A A 123 3.771 26.530 6.085 1.00 45.83 N
ATOM 20 N1 A A 123 3.715 24.701 7.509 1.00 44.90 N
ATOM 21 C2 A A 123 3.042 23.984 8.417 1.00 47.67 C
ATOM 22 N3 A A 123 1.826 24.183 8.927 1.00 49.62 N
ATOM 23 C4 A A 123 1.268 25.282 8.396 1.00 51.15 C
ATOM 24 P U A 124 -3.519 24.890 13.317 1.00 98.58 P
ATOM 25 OP1 U A 124 -2.748 23.865 14.068 1.00 94.30 O
ATOM 26 OP2 U A 124 -4.998 24.789 13.284 1.00 88.49 O
ATOM 27 O5' U A 124 -3.072 26.368 13.788 1.00 90.26 O
TER
ATOM 1 O3' G B 120 1.254 36.133 3.766 1.00 58.80 O
ATOM 2 P G B 121 0.174 35.160 3.085 1.00 62.50 P
ATOM 3 OP1 G B 121 0.513 35.172 1.640 1.00 52.21 O
ATOM 4 OP2 G B 121 -1.194 35.478 3.574 1.00 51.90 O
ATOM 5 O5' G B 121 0.517 33.726 3.714 1.00 56.34 O
ATOM 6 C5' G B 121 1.696 33.034 3.323 1.00 52.37 C
ATOM 7 C4' G B 121 1.855 31.788 4.166 1.00 49.74 C
ATOM 8 O4' G B 121 1.988 32.171 5.551 1.00 47.79 O
ATOM 9 C3' G B 121 0.653 30.864 4.183 1.00 51.22 C
ATOM 10 O3' G B 121 0.649 30.056 3.010 1.00 49.67 O
ATOM 11 C2' G B 121 0.990 30.053 5.426 1.00 49.43 C
ATOM 12 O2' G B 121 2.005 29.107 5.155 1.00 48.91 O
ATOM 13 C1' G B 121 1.514 31.130 6.372 1.00 47.77 C
ATOM 14 N9 G B 121 0.478 31.696 7.220 1.00 50.70 N
ATOM 15 C8 G B 121 -0.284 32.801 6.931 1.00 52.77 C
ATOM 16 N7 G B 121 -1.149 33.091 7.864 1.00 52.26 N
ATOM 17 C5 G B 121 -0.946 32.119 8.830 1.00 51.43 C
ATOM 18 C6 G B 121 -1.599 31.928 10.067 1.00 55.87 C
ATOM 19 O6 G B 121 -2.510 32.606 10.560 1.00 65.87 O
ATOM 20 N1 G B 121 -1.104 30.827 10.757 1.00 55.82 N
ATOM 21 C2 G B 121 -0.099 30.014 10.299 1.00 53.89 C
ATOM 22 N2 G B 121 0.235 29.002 11.111 1.00 54.44 N
ATOM 23 N3 G B 121 0.526 30.181 9.135 1.00 51.55 N
ATOM 24 C4 G B 121 0.052 31.251 8.453 1.00 51.18 C
ATOM 25 P A B 122 -0.607 30.056 2.015 1.00 50.27 P
ATOM 26 OP1 A B 122 -0.103 29.833 0.637 1.00 49.64 O
ATOM 27 OP2 A B 122 -1.437 31.240 2.324 1.00 50.96 O
ATOM 28 O5' A B 122 -1.428 28.774 2.473 1.00 45.37 O
TER
Atoms:
OP1: (-4.752,29.619,8.027)
OP2: (-2.443,30.018,6.933)
C3': (-2.427,26.097,11.307)
C1': (-0.990,25.312,9.581)
C5': (-3.031,27.825,9.513)
O4': (-2.254,25.612,9.017)
C8: (-0.078,26.925,7.877)
O2': (-0.339,24.959,11.848)
C6: (3.124,25.797,6.996)
C5: (1.836,26.117,7.454)
C4: (1.268,25.282,8.396)
P: (-3.563,29.112,7.303)
C4': (-3.043,26.380,9.952)
C2': (-0.950,25.899,10.985)
C2: (3.042,23.984,8.417)
N1: (3.715,24.701,7.509)
N3: (1.826,24.183,8.927)
N6: (3.771,26.530,6.085)
N7: (0.978,27.150,7.135)
N9: (0.028,25.819,8.667)
O5': (-3.030,27.837,8.105)
O3': (-3.000,24.902,11.806)
OP2: (-2.443,30.018,6.933)
C3': (-2.427,26.097,11.307)
C1': (-0.990,25.312,9.581)
C5': (-3.031,27.825,9.513)
O4': (-2.254,25.612,9.017)
C8: (-0.078,26.925,7.877)
O2': (-0.339,24.959,11.848)
C6: (3.124,25.797,6.996)
C5: (1.836,26.117,7.454)
C4: (1.268,25.282,8.396)
P: (-3.563,29.112,7.303)
C4': (-3.043,26.380,9.952)
C2': (-0.950,25.899,10.985)
C2: (3.042,23.984,8.417)
N1: (3.715,24.701,7.509)
N3: (1.826,24.183,8.927)
N6: (3.771,26.530,6.085)
N7: (0.978,27.150,7.135)
N9: (0.028,25.819,8.667)
O5': (-3.030,27.837,8.105)
O3': (-3.000,24.902,11.806)
OP1: (0.513,35.172,1.640)
OP2: (-1.194,35.478,3.574)
C3': (0.653,30.864,4.183)
C1': (1.514,31.130,6.372)
C5': (1.696,33.034,3.323)
O6: (-2.510,32.606,10.560)
O4': (1.988,32.171,5.551)
C8: (-0.284,32.801,6.931)
C2: (-0.099,30.014,10.299)
C6: (-1.599,31.928,10.067)
C5: (-0.946,32.119,8.830)
C4: (0.052,31.251,8.453)
P: (0.174,35.160,3.085)
C4': (1.855,31.788,4.166)
C2': (0.990,30.053,5.426)
O2': (2.005,29.107,5.155)
N1: (-1.104,30.827,10.757)
N2: (0.235,29.002,11.111)
N3: (0.526,30.181,9.135)
N7: (-1.149,33.091,7.864)
N9: (0.478,31.696,7.220)
O5': (0.517,33.726,3.714)
O3': (0.649,30.056,3.010)
OP2: (-1.194,35.478,3.574)
C3': (0.653,30.864,4.183)
C1': (1.514,31.130,6.372)
C5': (1.696,33.034,3.323)
O6: (-2.510,32.606,10.560)
O4': (1.988,32.171,5.551)
C8: (-0.284,32.801,6.931)
C2: (-0.099,30.014,10.299)
C6: (-1.599,31.928,10.067)
C5: (-0.946,32.119,8.830)
C4: (0.052,31.251,8.453)
P: (0.174,35.160,3.085)
C4': (1.855,31.788,4.166)
C2': (0.990,30.053,5.426)
O2': (2.005,29.107,5.155)
N1: (-1.104,30.827,10.757)
N2: (0.235,29.002,11.111)
N3: (0.526,30.181,9.135)
N7: (-1.149,33.091,7.864)
N9: (0.478,31.696,7.220)
O5': (0.517,33.726,3.714)
O3': (0.649,30.056,3.010)
Image (generated by PyMOL):