Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1NYI:B12:B10
Extra
PDB:
ATOM 1 O3' U A 11 33.286 -3.585 5.816 1.00 44.78 O
ATOM 2 P A A 12 32.954 -3.947 7.350 1.00 44.49 P
ATOM 3 OP1 A A 12 31.480 -3.842 7.495 1.00 43.92 O
ATOM 4 OP2 A A 12 33.845 -3.140 8.225 1.00 43.87 O
ATOM 5 O5' A A 12 33.430 -5.476 7.453 1.00 41.33 O
ATOM 6 C5' A A 12 32.682 -6.442 6.762 1.00 40.64 C
ATOM 7 C4' A A 12 33.453 -7.735 6.789 1.00 42.14 C
ATOM 8 O4' A A 12 34.789 -7.516 6.294 1.00 42.32 O
ATOM 9 C3' A A 12 33.663 -8.287 8.183 1.00 42.31 C
ATOM 10 O3' A A 12 32.540 -9.093 8.491 1.00 42.60 O
ATOM 11 C2' A A 12 34.959 -9.091 8.041 1.00 41.56 C
ATOM 12 O2' A A 12 34.744 -10.363 7.481 1.00 40.42 O
ATOM 13 C1' A A 12 35.735 -8.284 7.028 1.00 40.97 C
ATOM 14 N9 A A 12 36.739 -7.337 7.509 1.00 40.10 N
ATOM 15 C8 A A 12 36.518 -6.058 7.945 1.00 38.84 C
ATOM 16 N7 A A 12 37.622 -5.428 8.269 1.00 38.46 N
ATOM 17 C5 A A 12 38.623 -6.343 8.003 1.00 38.50 C
ATOM 18 C6 A A 12 40.020 -6.286 8.123 1.00 38.55 C
ATOM 19 N6 A A 12 40.658 -5.212 8.572 1.00 38.24 N
ATOM 20 N1 A A 12 40.748 -7.373 7.783 1.00 40.93 N
ATOM 21 C2 A A 12 40.104 -8.463 7.333 1.00 41.58 C
ATOM 22 N3 A A 12 38.781 -8.618 7.176 1.00 41.01 N
ATOM 23 C4 A A 12 38.097 -7.520 7.528 1.00 39.15 C
ATOM 24 P A A 13 32.196 -9.440 10.003 1.00 42.72 P
ATOM 25 OP1 A A 13 31.047 -10.369 9.951 1.00 43.52 O
ATOM 26 OP2 A A 13 32.231 -8.164 10.753 1.00 42.99 O
ATOM 27 O5' A A 13 33.378 -10.356 10.506 1.00 41.90 O
TER
ATOM 1 O3' C B 9 36.631 3.472 11.913 1.00 42.44 O
ATOM 2 P G B 10 36.266 3.418 10.356 1.00 42.64 P
ATOM 3 OP1 G B 10 37.298 4.192 9.637 1.00 42.23 O
ATOM 4 OP2 G B 10 34.826 3.728 10.207 1.00 41.59 O
ATOM 5 O5' G B 10 36.503 1.878 10.059 1.00 41.59 O
ATOM 6 C5' G B 10 37.821 1.409 10.187 1.00 40.64 C
ATOM 7 C4' G B 10 37.780 -0.096 10.285 1.00 41.10 C
ATOM 8 O4' G B 10 37.056 -0.587 11.447 1.00 41.16 O
ATOM 9 C3' G B 10 37.079 -0.793 9.142 1.00 40.76 C
ATOM 10 O3' G B 10 37.905 -0.635 8.030 1.00 42.78 O
ATOM 11 C2' G B 10 37.161 -2.192 9.736 1.00 40.22 C
ATOM 12 O2' G B 10 38.469 -2.758 9.599 1.00 39.65 O
ATOM 13 C1' G B 10 36.709 -1.936 11.195 1.00 39.37 C
ATOM 14 N9 G B 10 35.255 -2.120 11.243 1.00 37.67 N
ATOM 15 C8 G B 10 34.277 -1.149 11.140 1.00 36.86 C
ATOM 16 N7 G B 10 33.063 -1.626 11.160 1.00 35.94 N
ATOM 17 C5 G B 10 33.251 -3.002 11.278 1.00 36.19 C
ATOM 18 C6 G B 10 32.306 -4.052 11.343 1.00 36.27 C
ATOM 19 O6 G B 10 31.076 -3.926 11.314 1.00 37.61 O
ATOM 20 N1 G B 10 32.886 -5.320 11.463 1.00 35.33 N
ATOM 21 C2 G B 10 34.250 -5.544 11.517 1.00 36.78 C
ATOM 22 N2 G B 10 34.693 -6.822 11.631 1.00 35.20 N
ATOM 23 N3 G B 10 35.140 -4.553 11.459 1.00 37.15 N
ATOM 24 C4 G B 10 34.583 -3.321 11.327 1.00 36.41 C
ATOM 25 P U B 11 37.424 -0.237 6.561 1.00 44.49 P
ATOM 26 OP1 U B 11 38.625 -0.557 5.749 1.00 45.29 O
ATOM 27 OP2 U B 11 36.829 1.124 6.569 1.00 43.36 O
ATOM 28 O5' U B 11 36.291 -1.309 6.183 1.00 44.47 O
TER
ATOM 2 P A A 12 32.954 -3.947 7.350 1.00 44.49 P
ATOM 3 OP1 A A 12 31.480 -3.842 7.495 1.00 43.92 O
ATOM 4 OP2 A A 12 33.845 -3.140 8.225 1.00 43.87 O
ATOM 5 O5' A A 12 33.430 -5.476 7.453 1.00 41.33 O
ATOM 6 C5' A A 12 32.682 -6.442 6.762 1.00 40.64 C
ATOM 7 C4' A A 12 33.453 -7.735 6.789 1.00 42.14 C
ATOM 8 O4' A A 12 34.789 -7.516 6.294 1.00 42.32 O
ATOM 9 C3' A A 12 33.663 -8.287 8.183 1.00 42.31 C
ATOM 10 O3' A A 12 32.540 -9.093 8.491 1.00 42.60 O
ATOM 11 C2' A A 12 34.959 -9.091 8.041 1.00 41.56 C
ATOM 12 O2' A A 12 34.744 -10.363 7.481 1.00 40.42 O
ATOM 13 C1' A A 12 35.735 -8.284 7.028 1.00 40.97 C
ATOM 14 N9 A A 12 36.739 -7.337 7.509 1.00 40.10 N
ATOM 15 C8 A A 12 36.518 -6.058 7.945 1.00 38.84 C
ATOM 16 N7 A A 12 37.622 -5.428 8.269 1.00 38.46 N
ATOM 17 C5 A A 12 38.623 -6.343 8.003 1.00 38.50 C
ATOM 18 C6 A A 12 40.020 -6.286 8.123 1.00 38.55 C
ATOM 19 N6 A A 12 40.658 -5.212 8.572 1.00 38.24 N
ATOM 20 N1 A A 12 40.748 -7.373 7.783 1.00 40.93 N
ATOM 21 C2 A A 12 40.104 -8.463 7.333 1.00 41.58 C
ATOM 22 N3 A A 12 38.781 -8.618 7.176 1.00 41.01 N
ATOM 23 C4 A A 12 38.097 -7.520 7.528 1.00 39.15 C
ATOM 24 P A A 13 32.196 -9.440 10.003 1.00 42.72 P
ATOM 25 OP1 A A 13 31.047 -10.369 9.951 1.00 43.52 O
ATOM 26 OP2 A A 13 32.231 -8.164 10.753 1.00 42.99 O
ATOM 27 O5' A A 13 33.378 -10.356 10.506 1.00 41.90 O
TER
ATOM 1 O3' C B 9 36.631 3.472 11.913 1.00 42.44 O
ATOM 2 P G B 10 36.266 3.418 10.356 1.00 42.64 P
ATOM 3 OP1 G B 10 37.298 4.192 9.637 1.00 42.23 O
ATOM 4 OP2 G B 10 34.826 3.728 10.207 1.00 41.59 O
ATOM 5 O5' G B 10 36.503 1.878 10.059 1.00 41.59 O
ATOM 6 C5' G B 10 37.821 1.409 10.187 1.00 40.64 C
ATOM 7 C4' G B 10 37.780 -0.096 10.285 1.00 41.10 C
ATOM 8 O4' G B 10 37.056 -0.587 11.447 1.00 41.16 O
ATOM 9 C3' G B 10 37.079 -0.793 9.142 1.00 40.76 C
ATOM 10 O3' G B 10 37.905 -0.635 8.030 1.00 42.78 O
ATOM 11 C2' G B 10 37.161 -2.192 9.736 1.00 40.22 C
ATOM 12 O2' G B 10 38.469 -2.758 9.599 1.00 39.65 O
ATOM 13 C1' G B 10 36.709 -1.936 11.195 1.00 39.37 C
ATOM 14 N9 G B 10 35.255 -2.120 11.243 1.00 37.67 N
ATOM 15 C8 G B 10 34.277 -1.149 11.140 1.00 36.86 C
ATOM 16 N7 G B 10 33.063 -1.626 11.160 1.00 35.94 N
ATOM 17 C5 G B 10 33.251 -3.002 11.278 1.00 36.19 C
ATOM 18 C6 G B 10 32.306 -4.052 11.343 1.00 36.27 C
ATOM 19 O6 G B 10 31.076 -3.926 11.314 1.00 37.61 O
ATOM 20 N1 G B 10 32.886 -5.320 11.463 1.00 35.33 N
ATOM 21 C2 G B 10 34.250 -5.544 11.517 1.00 36.78 C
ATOM 22 N2 G B 10 34.693 -6.822 11.631 1.00 35.20 N
ATOM 23 N3 G B 10 35.140 -4.553 11.459 1.00 37.15 N
ATOM 24 C4 G B 10 34.583 -3.321 11.327 1.00 36.41 C
ATOM 25 P U B 11 37.424 -0.237 6.561 1.00 44.49 P
ATOM 26 OP1 U B 11 38.625 -0.557 5.749 1.00 45.29 O
ATOM 27 OP2 U B 11 36.829 1.124 6.569 1.00 43.36 O
ATOM 28 O5' U B 11 36.291 -1.309 6.183 1.00 44.47 O
TER
Atoms:
OP1: (31.480,-3.842,7.495)
OP2: (33.845,-3.140,8.225)
C3': (33.663,-8.287,8.183)
C1': (35.735,-8.284,7.028)
C5': (32.682,-6.442,6.762)
O4': (34.789,-7.516,6.294)
C8: (36.518,-6.058,7.945)
O2': (34.744,-10.363,7.481)
C6: (40.020,-6.286,8.123)
C5: (38.623,-6.343,8.003)
C4: (38.097,-7.520,7.528)
P: (32.954,-3.947,7.350)
C4': (33.453,-7.735,6.789)
C2': (34.959,-9.091,8.041)
C2: (40.104,-8.463,7.333)
N1: (40.748,-7.373,7.783)
N3: (38.781,-8.618,7.176)
N6: (40.658,-5.212,8.572)
N7: (37.622,-5.428,8.269)
N9: (36.739,-7.337,7.509)
O5': (33.430,-5.476,7.453)
O3': (32.540,-9.093,8.491)
OP2: (33.845,-3.140,8.225)
C3': (33.663,-8.287,8.183)
C1': (35.735,-8.284,7.028)
C5': (32.682,-6.442,6.762)
O4': (34.789,-7.516,6.294)
C8: (36.518,-6.058,7.945)
O2': (34.744,-10.363,7.481)
C6: (40.020,-6.286,8.123)
C5: (38.623,-6.343,8.003)
C4: (38.097,-7.520,7.528)
P: (32.954,-3.947,7.350)
C4': (33.453,-7.735,6.789)
C2': (34.959,-9.091,8.041)
C2: (40.104,-8.463,7.333)
N1: (40.748,-7.373,7.783)
N3: (38.781,-8.618,7.176)
N6: (40.658,-5.212,8.572)
N7: (37.622,-5.428,8.269)
N9: (36.739,-7.337,7.509)
O5': (33.430,-5.476,7.453)
O3': (32.540,-9.093,8.491)
OP1: (37.298,4.192,9.637)
OP2: (34.826,3.728,10.207)
C3': (37.079,-0.793,9.142)
C1': (36.709,-1.936,11.195)
C5': (37.821,1.409,10.187)
O6: (31.076,-3.926,11.314)
O4': (37.056,-0.587,11.447)
C8: (34.277,-1.149,11.140)
C2: (34.250,-5.544,11.517)
C6: (32.306,-4.052,11.343)
C5: (33.251,-3.002,11.278)
C4: (34.583,-3.321,11.327)
P: (36.266,3.418,10.356)
C4': (37.780,-0.096,10.285)
C2': (37.161,-2.192,9.736)
O2': (38.469,-2.758,9.599)
N1: (32.886,-5.320,11.463)
N2: (34.693,-6.822,11.631)
N3: (35.140,-4.553,11.459)
N7: (33.063,-1.626,11.160)
N9: (35.255,-2.120,11.243)
O5': (36.503,1.878,10.059)
O3': (37.905,-0.635,8.030)
OP2: (34.826,3.728,10.207)
C3': (37.079,-0.793,9.142)
C1': (36.709,-1.936,11.195)
C5': (37.821,1.409,10.187)
O6: (31.076,-3.926,11.314)
O4': (37.056,-0.587,11.447)
C8: (34.277,-1.149,11.140)
C2: (34.250,-5.544,11.517)
C6: (32.306,-4.052,11.343)
C5: (33.251,-3.002,11.278)
C4: (34.583,-3.321,11.327)
P: (36.266,3.418,10.356)
C4': (37.780,-0.096,10.285)
C2': (37.161,-2.192,9.736)
O2': (38.469,-2.758,9.599)
N1: (32.886,-5.320,11.463)
N2: (34.693,-6.822,11.631)
N3: (35.140,-4.553,11.459)
N7: (33.063,-1.626,11.160)
N9: (35.255,-2.120,11.243)
O5': (36.503,1.878,10.059)
O3': (37.905,-0.635,8.030)
Image (generated by PyMOL):