Doublet info:
Details
Nucleotide types:
AG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2YDH:A51:A49
Extra
PDB:
ATOM 1 O3' A A 50 24.051 5.549 -5.977 1.00116.84 O
ATOM 2 P A A 51 23.455 5.646 -4.478 1.00121.11 P
ATOM 3 OP1 A A 51 23.087 4.276 -4.042 1.00121.69 O
ATOM 4 OP2 A A 51 22.420 6.699 -4.454 1.00121.52 O
ATOM 5 O5' A A 51 24.712 6.189 -3.646 1.00120.79 O
ATOM 6 C5' A A 51 24.532 7.042 -2.512 1.00121.96 C
ATOM 7 C4' A A 51 25.245 8.387 -2.649 1.00122.52 C
ATOM 8 O4' A A 51 24.989 8.960 -3.953 1.00122.00 O
ATOM 9 C3' A A 51 24.759 9.439 -1.654 1.00123.30 C
ATOM 10 O3' A A 51 25.539 9.435 -0.445 1.00125.03 O
ATOM 11 C2' A A 51 24.844 10.769 -2.397 1.00122.05 C
ATOM 12 O2' A A 51 26.036 11.491 -2.161 1.00123.09 O
ATOM 13 C1' A A 51 24.711 10.342 -3.857 1.00120.48 C
ATOM 14 N9 A A 51 23.368 10.548 -4.358 1.00117.75 N
ATOM 15 C8 A A 51 22.550 9.620 -4.933 1.00116.64 C
ATOM 16 N7 A A 51 21.385 10.101 -5.285 1.00116.56 N
ATOM 17 C5 A A 51 21.439 11.442 -4.905 1.00115.67 C
ATOM 18 C6 A A 51 20.519 12.517 -5.005 1.00114.32 C
ATOM 19 N6 A A 51 19.299 12.402 -5.533 1.00112.93 N
ATOM 20 N1 A A 51 20.896 13.726 -4.532 1.00114.68 N
ATOM 21 C2 A A 51 22.125 13.847 -3.998 1.00115.38 C
ATOM 22 N3 A A 51 23.079 12.920 -3.854 1.00115.57 N
ATOM 23 C4 A A 51 22.667 11.730 -4.332 1.00116.33 C
ATOM 24 P A A 52 24.805 9.703 0.963 1.00126.57 P
ATOM 25 OP1 A A 52 25.778 9.426 2.046 1.00126.41 O
ATOM 26 OP2 A A 52 23.522 8.952 0.952 1.00126.11 O
ATOM 27 O5' A A 52 24.516 11.278 0.924 1.00123.96 O
TER
ATOM 1 O3' A B 48 14.751 3.541 -7.565 1.00 93.91 O
ATOM 2 P G B 49 16.115 3.444 -8.383 1.00 94.53 P
ATOM 3 OP1 G B 49 15.796 3.629 -9.822 1.00 95.56 O
ATOM 4 OP2 G B 49 16.881 2.259 -7.943 1.00 92.93 O
ATOM 5 O5' G B 49 16.850 4.753 -7.847 1.00 93.73 O
ATOM 6 C5' G B 49 16.241 6.012 -7.920 1.00 95.73 C
ATOM 7 C4' G B 49 17.081 7.042 -7.185 1.00 98.41 C
ATOM 8 O4' G B 49 16.816 6.923 -5.754 1.00 99.28 O
ATOM 9 C3' G B 49 18.611 6.935 -7.281 1.00100.81 C
ATOM 10 O3' G B 49 19.199 7.409 -8.509 1.00104.62 O
ATOM 11 C2' G B 49 18.955 7.782 -6.061 1.00100.51 C
ATOM 12 O2' G B 49 18.671 9.158 -6.267 1.00100.24 O
ATOM 13 C1' G B 49 18.033 7.098 -5.038 1.00 99.51 C
ATOM 14 N9 G B 49 18.617 5.812 -4.600 1.00 97.76 N
ATOM 15 C8 G B 49 18.458 4.552 -5.150 1.00 97.20 C
ATOM 16 N7 G B 49 19.138 3.595 -4.587 1.00 95.86 N
ATOM 17 C5 G B 49 19.799 4.263 -3.599 1.00 94.55 C
ATOM 18 C6 G B 49 20.667 3.714 -2.674 1.00 95.10 C
ATOM 19 O6 G B 49 20.978 2.521 -2.630 1.00 95.53 O
ATOM 20 N1 G B 49 21.157 4.700 -1.804 1.00 96.43 N
ATOM 21 C2 G B 49 20.819 6.057 -1.850 1.00 96.39 C
ATOM 22 N2 G B 49 21.382 6.887 -0.950 1.00 95.79 N
ATOM 23 N3 G B 49 19.976 6.579 -2.740 1.00 96.74 N
ATOM 24 C4 G B 49 19.511 5.614 -3.579 1.00 96.47 C
ATOM 25 P A B 50 20.113 6.428 -9.419 1.00107.45 P
ATOM 26 OP1 A B 50 20.514 7.205 -10.606 1.00106.73 O
ATOM 27 OP2 A B 50 19.439 5.122 -9.599 1.00106.68 O
ATOM 28 O5' A B 50 21.413 6.177 -8.517 1.00108.19 O
TER
ATOM 2 P A A 51 23.455 5.646 -4.478 1.00121.11 P
ATOM 3 OP1 A A 51 23.087 4.276 -4.042 1.00121.69 O
ATOM 4 OP2 A A 51 22.420 6.699 -4.454 1.00121.52 O
ATOM 5 O5' A A 51 24.712 6.189 -3.646 1.00120.79 O
ATOM 6 C5' A A 51 24.532 7.042 -2.512 1.00121.96 C
ATOM 7 C4' A A 51 25.245 8.387 -2.649 1.00122.52 C
ATOM 8 O4' A A 51 24.989 8.960 -3.953 1.00122.00 O
ATOM 9 C3' A A 51 24.759 9.439 -1.654 1.00123.30 C
ATOM 10 O3' A A 51 25.539 9.435 -0.445 1.00125.03 O
ATOM 11 C2' A A 51 24.844 10.769 -2.397 1.00122.05 C
ATOM 12 O2' A A 51 26.036 11.491 -2.161 1.00123.09 O
ATOM 13 C1' A A 51 24.711 10.342 -3.857 1.00120.48 C
ATOM 14 N9 A A 51 23.368 10.548 -4.358 1.00117.75 N
ATOM 15 C8 A A 51 22.550 9.620 -4.933 1.00116.64 C
ATOM 16 N7 A A 51 21.385 10.101 -5.285 1.00116.56 N
ATOM 17 C5 A A 51 21.439 11.442 -4.905 1.00115.67 C
ATOM 18 C6 A A 51 20.519 12.517 -5.005 1.00114.32 C
ATOM 19 N6 A A 51 19.299 12.402 -5.533 1.00112.93 N
ATOM 20 N1 A A 51 20.896 13.726 -4.532 1.00114.68 N
ATOM 21 C2 A A 51 22.125 13.847 -3.998 1.00115.38 C
ATOM 22 N3 A A 51 23.079 12.920 -3.854 1.00115.57 N
ATOM 23 C4 A A 51 22.667 11.730 -4.332 1.00116.33 C
ATOM 24 P A A 52 24.805 9.703 0.963 1.00126.57 P
ATOM 25 OP1 A A 52 25.778 9.426 2.046 1.00126.41 O
ATOM 26 OP2 A A 52 23.522 8.952 0.952 1.00126.11 O
ATOM 27 O5' A A 52 24.516 11.278 0.924 1.00123.96 O
TER
ATOM 1 O3' A B 48 14.751 3.541 -7.565 1.00 93.91 O
ATOM 2 P G B 49 16.115 3.444 -8.383 1.00 94.53 P
ATOM 3 OP1 G B 49 15.796 3.629 -9.822 1.00 95.56 O
ATOM 4 OP2 G B 49 16.881 2.259 -7.943 1.00 92.93 O
ATOM 5 O5' G B 49 16.850 4.753 -7.847 1.00 93.73 O
ATOM 6 C5' G B 49 16.241 6.012 -7.920 1.00 95.73 C
ATOM 7 C4' G B 49 17.081 7.042 -7.185 1.00 98.41 C
ATOM 8 O4' G B 49 16.816 6.923 -5.754 1.00 99.28 O
ATOM 9 C3' G B 49 18.611 6.935 -7.281 1.00100.81 C
ATOM 10 O3' G B 49 19.199 7.409 -8.509 1.00104.62 O
ATOM 11 C2' G B 49 18.955 7.782 -6.061 1.00100.51 C
ATOM 12 O2' G B 49 18.671 9.158 -6.267 1.00100.24 O
ATOM 13 C1' G B 49 18.033 7.098 -5.038 1.00 99.51 C
ATOM 14 N9 G B 49 18.617 5.812 -4.600 1.00 97.76 N
ATOM 15 C8 G B 49 18.458 4.552 -5.150 1.00 97.20 C
ATOM 16 N7 G B 49 19.138 3.595 -4.587 1.00 95.86 N
ATOM 17 C5 G B 49 19.799 4.263 -3.599 1.00 94.55 C
ATOM 18 C6 G B 49 20.667 3.714 -2.674 1.00 95.10 C
ATOM 19 O6 G B 49 20.978 2.521 -2.630 1.00 95.53 O
ATOM 20 N1 G B 49 21.157 4.700 -1.804 1.00 96.43 N
ATOM 21 C2 G B 49 20.819 6.057 -1.850 1.00 96.39 C
ATOM 22 N2 G B 49 21.382 6.887 -0.950 1.00 95.79 N
ATOM 23 N3 G B 49 19.976 6.579 -2.740 1.00 96.74 N
ATOM 24 C4 G B 49 19.511 5.614 -3.579 1.00 96.47 C
ATOM 25 P A B 50 20.113 6.428 -9.419 1.00107.45 P
ATOM 26 OP1 A B 50 20.514 7.205 -10.606 1.00106.73 O
ATOM 27 OP2 A B 50 19.439 5.122 -9.599 1.00106.68 O
ATOM 28 O5' A B 50 21.413 6.177 -8.517 1.00108.19 O
TER
Atoms:
OP1: (23.087,4.276,-4.042)
OP2: (22.420,6.699,-4.454)
C3': (24.759,9.439,-1.654)
C1': (24.711,10.342,-3.857)
C5': (24.532,7.042,-2.512)
O4': (24.989,8.960,-3.953)
C8: (22.550,9.620,-4.933)
O2': (26.036,11.491,-2.161)
C6: (20.519,12.517,-5.005)
C5: (21.439,11.442,-4.905)
C4: (22.667,11.730,-4.332)
P: (23.455,5.646,-4.478)
C4': (25.245,8.387,-2.649)
C2': (24.844,10.769,-2.397)
C2: (22.125,13.847,-3.998)
N1: (20.896,13.726,-4.532)
N3: (23.079,12.920,-3.854)
N6: (19.299,12.402,-5.533)
N7: (21.385,10.101,-5.285)
N9: (23.368,10.548,-4.358)
O5': (24.712,6.189,-3.646)
O3': (25.539,9.435,-0.445)
OP2: (22.420,6.699,-4.454)
C3': (24.759,9.439,-1.654)
C1': (24.711,10.342,-3.857)
C5': (24.532,7.042,-2.512)
O4': (24.989,8.960,-3.953)
C8: (22.550,9.620,-4.933)
O2': (26.036,11.491,-2.161)
C6: (20.519,12.517,-5.005)
C5: (21.439,11.442,-4.905)
C4: (22.667,11.730,-4.332)
P: (23.455,5.646,-4.478)
C4': (25.245,8.387,-2.649)
C2': (24.844,10.769,-2.397)
C2: (22.125,13.847,-3.998)
N1: (20.896,13.726,-4.532)
N3: (23.079,12.920,-3.854)
N6: (19.299,12.402,-5.533)
N7: (21.385,10.101,-5.285)
N9: (23.368,10.548,-4.358)
O5': (24.712,6.189,-3.646)
O3': (25.539,9.435,-0.445)
OP1: (15.796,3.629,-9.822)
OP2: (16.881,2.259,-7.943)
C3': (18.611,6.935,-7.281)
C1': (18.033,7.098,-5.038)
C5': (16.241,6.012,-7.920)
O6: (20.978,2.521,-2.630)
O4': (16.816,6.923,-5.754)
C8: (18.458,4.552,-5.150)
C2: (20.819,6.057,-1.850)
C6: (20.667,3.714,-2.674)
C5: (19.799,4.263,-3.599)
C4: (19.511,5.614,-3.579)
P: (16.115,3.444,-8.383)
C4': (17.081,7.042,-7.185)
C2': (18.955,7.782,-6.061)
O2': (18.671,9.158,-6.267)
N1: (21.157,4.700,-1.804)
N2: (21.382,6.887,-0.950)
N3: (19.976,6.579,-2.740)
N7: (19.138,3.595,-4.587)
N9: (18.617,5.812,-4.600)
O5': (16.850,4.753,-7.847)
O3': (19.199,7.409,-8.509)
OP2: (16.881,2.259,-7.943)
C3': (18.611,6.935,-7.281)
C1': (18.033,7.098,-5.038)
C5': (16.241,6.012,-7.920)
O6: (20.978,2.521,-2.630)
O4': (16.816,6.923,-5.754)
C8: (18.458,4.552,-5.150)
C2: (20.819,6.057,-1.850)
C6: (20.667,3.714,-2.674)
C5: (19.799,4.263,-3.599)
C4: (19.511,5.614,-3.579)
P: (16.115,3.444,-8.383)
C4': (17.081,7.042,-7.185)
C2': (18.955,7.782,-6.061)
O2': (18.671,9.158,-6.267)
N1: (21.157,4.700,-1.804)
N2: (21.382,6.887,-0.950)
N3: (19.976,6.579,-2.740)
N7: (19.138,3.595,-4.587)
N9: (18.617,5.812,-4.600)
O5': (16.850,4.753,-7.847)
O3': (19.199,7.409,-8.509)
Image (generated by PyMOL):