ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ8:01237:01235

Extra

PDB:
ATOM 1 O3' C A1236 9.942 86.601 58.471 1.00 51.85 O
ATOM 2 P A A1237 9.951 86.516 60.073 1.00 51.94 P
ATOM 3 OP1 A A1237 11.114 85.671 60.449 1.00 50.76 O
ATOM 4 OP2 A A1237 8.590 86.148 60.548 1.00 53.01 O
ATOM 5 O5' A A1237 10.226 88.018 60.519 1.00 53.82 O
ATOM 6 C5' A A1237 11.516 88.627 60.327 1.00 56.73 C
ATOM 7 C4' A A1237 11.467 90.072 60.749 1.00 58.73 C
ATOM 8 O4' A A1237 10.569 90.786 59.865 1.00 58.46 O
ATOM 9 C3' A A1237 10.903 90.302 62.140 1.00 61.07 C
ATOM 10 O3' A A1237 11.923 90.162 63.121 1.00 67.22 O
ATOM 11 C2' A A1237 10.355 91.721 62.046 1.00 59.65 C
ATOM 12 O2' A A1237 11.355 92.709 62.199 1.00 60.50 O
ATOM 13 C1' A A1237 9.835 91.747 60.604 1.00 57.78 C
ATOM 14 N9 A A1237 8.422 91.412 60.472 1.00 56.36 N
ATOM 15 C8 A A1237 7.846 90.169 60.567 1.00 55.96 C
ATOM 16 N7 A A1237 6.548 90.174 60.399 1.00 55.79 N
ATOM 17 C5 A A1237 6.246 91.509 60.184 1.00 56.32 C
ATOM 18 C6 A A1237 5.035 92.172 59.957 1.00 58.15 C
ATOM 19 N6 A A1237 3.850 91.553 59.915 1.00 57.91 N
ATOM 20 N1 A A1237 5.078 93.513 59.778 1.00 58.93 N
ATOM 21 C2 A A1237 6.267 94.130 59.837 1.00 57.28 C
ATOM 22 N3 A A1237 7.474 93.613 60.053 1.00 56.83 N
ATOM 23 C4 A A1237 7.393 92.283 60.220 1.00 56.56 C
ATOM 24 P U A1238 11.565 89.575 64.577 1.00 71.71 P
ATOM 25 OP1 U A1238 11.664 88.093 64.494 1.00 69.75 O
ATOM 26 OP2 U A1238 10.296 90.207 65.035 1.00 71.48 O
ATOM 27 O5' U A1238 12.770 90.094 65.489 1.00 76.08 O
TER

ATOM 1 O3' C B1234 2.232 82.173 63.150 1.00 48.67 O
ATOM 2 P U B1235 3.162 81.932 61.862 1.00 49.74 P
ATOM 3 OP1 U B1235 2.315 81.479 60.726 1.00 52.56 O
ATOM 4 OP2 U B1235 4.306 81.094 62.296 1.00 49.52 O
ATOM 5 O5' U B1235 3.684 83.395 61.502 1.00 51.52 O
ATOM 6 C5' U B1235 2.745 84.428 61.138 1.00 51.61 C
ATOM 7 C4' U B1235 3.436 85.768 61.014 1.00 51.93 C
ATOM 8 O4' U B1235 3.978 86.172 62.302 1.00 52.21 O
ATOM 9 C3' U B1235 4.635 85.856 60.084 1.00 51.86 C
ATOM 10 O3' U B1235 4.249 85.949 58.718 1.00 52.17 O
ATOM 11 C2' U B1235 5.293 87.138 60.577 1.00 52.97 C
ATOM 12 O2' U B1235 4.608 88.295 60.136 1.00 54.32 O
ATOM 13 C1' U B1235 5.111 87.002 62.094 1.00 51.97 C
ATOM 14 N1 U B1235 6.281 86.376 62.726 1.00 51.21 N
ATOM 15 C2 U B1235 7.268 87.211 63.231 1.00 51.57 C
ATOM 16 O2 U B1235 7.176 88.433 63.233 1.00 51.63 O
ATOM 17 N3 U B1235 8.367 86.562 63.738 1.00 51.01 N
ATOM 18 C4 U B1235 8.571 85.199 63.801 1.00 50.87 C
ATOM 19 O4 U B1235 9.651 84.766 64.210 1.00 50.87 O
ATOM 20 C5 U B1235 7.492 84.410 63.295 1.00 50.80 C
ATOM 21 C6 U B1235 6.412 85.009 62.790 1.00 50.59 C
ATOM 22 P C B1236 5.082 85.151 57.593 1.00 52.84 P
ATOM 23 OP1 C B1236 4.294 85.175 56.332 1.00 52.14 O
ATOM 24 OP2 C B1236 5.481 83.840 58.178 1.00 52.26 O
ATOM 25 O5' C B1236 6.385 86.049 57.388 1.00 53.23 O
TER

Atoms:
OP1: (11.114,85.671,60.449)
OP2: (8.590,86.148,60.548)
C3': (10.903,90.302,62.140)
C1': (9.835,91.747,60.604)
C5': (11.516,88.627,60.327)
O4': (10.569,90.786,59.865)
C8: (7.846,90.169,60.567)
O2': (11.355,92.709,62.199)
C6: (5.035,92.172,59.957)
C5: (6.246,91.509,60.184)
C4: (7.393,92.283,60.220)
P: (9.951,86.516,60.073)
C4': (11.467,90.072,60.749)
C2': (10.355,91.721,62.046)
C2: (6.267,94.130,59.837)
N1: (5.078,93.513,59.778)
N3: (7.474,93.613,60.053)
N6: (3.850,91.553,59.915)
N7: (6.548,90.174,60.399)
N9: (8.422,91.412,60.472)
O5': (10.226,88.018,60.519)
O3': (11.923,90.162,63.121)
C4: (8.571,85.199,63.801)
N3: (8.367,86.562,63.738)
OP1: (2.315,81.479,60.726)
OP2: (4.306,81.094,62.296)
C2: (7.268,87.211,63.231)
C1': (5.111,87.002,62.094)
C3': (4.635,85.856,60.084)
O5': (3.684,83.395,61.502)
O4': (3.978,86.172,62.302)
C5': (2.745,84.428,61.138)
P: (3.162,81.932,61.862)
C4': (3.436,85.768,61.014)
C2': (5.293,87.138,60.577)
O2': (4.608,88.295,60.136)
N1: (6.281,86.376,62.726)
O4: (9.651,84.766,64.210)
O2: (7.176,88.433,63.233)
C6: (6.412,85.009,62.790)
C5: (7.492,84.410,63.295)
O3': (4.249,85.949,58.718)
Image (generated by PyMOL):
PyMOL image
show in jmol