ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQ9:01237:01235

Extra

PDB:
ATOM 1 O3' C A1236 9.931 86.689 58.331 1.00 54.06 O
ATOM 2 P A A1237 9.972 86.657 59.932 1.00 54.28 P
ATOM 3 OP1 A A1237 11.177 85.879 60.330 1.00 51.90 O
ATOM 4 OP2 A A1237 8.631 86.250 60.433 1.00 54.28 O
ATOM 5 O5' A A1237 10.185 88.184 60.327 1.00 55.90 O
ATOM 6 C5' A A1237 11.462 88.829 60.153 1.00 59.05 C
ATOM 7 C4' A A1237 11.377 90.263 60.604 1.00 60.59 C
ATOM 8 O4' A A1237 10.462 90.975 59.734 1.00 60.70 O
ATOM 9 C3' A A1237 10.818 90.457 62.003 1.00 62.51 C
ATOM 10 O3' A A1237 11.861 90.326 62.970 1.00 67.48 O
ATOM 11 C2' A A1237 10.236 91.865 61.934 1.00 61.49 C
ATOM 12 O2' A A1237 11.212 92.873 62.097 1.00 63.07 O
ATOM 13 C1' A A1237 9.718 91.913 60.491 1.00 60.12 C
ATOM 14 N9 A A1237 8.306 91.579 60.346 1.00 59.45 N
ATOM 15 C8 A A1237 7.729 90.334 60.409 1.00 59.06 C
ATOM 16 N7 A A1237 6.431 90.345 60.247 1.00 58.99 N
ATOM 17 C5 A A1237 6.129 91.686 60.067 1.00 59.41 C
ATOM 18 C6 A A1237 4.916 92.360 59.861 1.00 60.56 C
ATOM 19 N6 A A1237 3.727 91.746 59.812 1.00 60.82 N
ATOM 20 N1 A A1237 4.961 93.705 59.710 1.00 60.98 N
ATOM 21 C2 A A1237 6.151 94.317 59.777 1.00 60.25 C
ATOM 22 N3 A A1237 7.359 93.791 59.977 1.00 60.35 N
ATOM 23 C4 A A1237 7.277 92.457 60.116 1.00 59.50 C
ATOM 24 P U A1238 11.542 89.734 64.436 1.00 72.12 P
ATOM 25 OP1 U A1238 11.671 88.249 64.363 1.00 69.98 O
ATOM 26 OP2 U A1238 10.276 90.343 64.934 1.00 70.84 O
ATOM 27 O5' U A1238 12.756 90.272 65.323 1.00 76.74 O
TER

ATOM 1 O3' C B1234 2.108 82.498 63.125 1.00 48.29 O
ATOM 2 P U B1235 3.020 82.186 61.839 1.00 51.14 P
ATOM 3 OP1 U B1235 2.138 81.718 60.734 1.00 52.14 O
ATOM 4 OP2 U B1235 4.151 81.324 62.289 1.00 49.54 O
ATOM 5 O5' U B1235 3.579 83.621 61.432 1.00 51.43 O
ATOM 6 C5' U B1235 2.665 84.678 61.086 1.00 52.00 C
ATOM 7 C4' U B1235 3.396 85.990 60.922 1.00 52.52 C
ATOM 8 O4' U B1235 3.937 86.428 62.200 1.00 52.63 O
ATOM 9 C3' U B1235 4.602 86.014 59.997 1.00 52.24 C
ATOM 10 O3' U B1235 4.236 86.067 58.619 1.00 52.80 O
ATOM 11 C2' U B1235 5.280 87.301 60.449 1.00 53.45 C
ATOM 12 O2' U B1235 4.604 88.443 59.954 1.00 53.48 O
ATOM 13 C1' U B1235 5.094 87.218 61.971 1.00 52.39 C
ATOM 14 N1 U B1235 6.245 86.575 62.627 1.00 52.00 N
ATOM 15 C2 U B1235 7.247 87.394 63.146 1.00 52.33 C
ATOM 16 O2 U B1235 7.190 88.619 63.134 1.00 51.72 O
ATOM 17 N3 U B1235 8.320 86.725 63.681 1.00 51.96 N
ATOM 18 C4 U B1235 8.494 85.357 63.756 1.00 52.37 C
ATOM 19 O4 U B1235 9.533 84.903 64.245 1.00 53.00 O
ATOM 20 C5 U B1235 7.407 84.588 63.232 1.00 52.31 C
ATOM 21 C6 U B1235 6.347 85.205 62.703 1.00 51.52 C
ATOM 22 P C B1236 5.098 85.250 57.525 1.00 53.94 P
ATOM 23 OP1 C B1236 4.374 85.295 56.227 1.00 52.14 O
ATOM 24 OP2 C B1236 5.443 83.928 58.118 1.00 52.89 O
ATOM 25 O5' C B1236 6.426 86.118 57.372 1.00 53.21 O
TER

Atoms:
OP1: (11.177,85.879,60.330)
OP2: (8.631,86.250,60.433)
C3': (10.818,90.457,62.003)
C1': (9.718,91.913,60.491)
C5': (11.462,88.829,60.153)
O4': (10.462,90.975,59.734)
C8: (7.729,90.334,60.409)
O2': (11.212,92.873,62.097)
C6: (4.916,92.360,59.861)
C5: (6.129,91.686,60.067)
C4: (7.277,92.457,60.116)
P: (9.972,86.657,59.932)
C4': (11.377,90.263,60.604)
C2': (10.236,91.865,61.934)
C2: (6.151,94.317,59.777)
N1: (4.961,93.705,59.710)
N3: (7.359,93.791,59.977)
N6: (3.727,91.746,59.812)
N7: (6.431,90.345,60.247)
N9: (8.306,91.579,60.346)
O5': (10.185,88.184,60.327)
O3': (11.861,90.326,62.970)
C4: (8.494,85.357,63.756)
N3: (8.320,86.725,63.681)
OP1: (2.138,81.718,60.734)
OP2: (4.151,81.324,62.289)
C2: (7.247,87.394,63.146)
C1': (5.094,87.218,61.971)
C3': (4.602,86.014,59.997)
O5': (3.579,83.621,61.432)
O4': (3.937,86.428,62.200)
C5': (2.665,84.678,61.086)
P: (3.020,82.186,61.839)
C4': (3.396,85.990,60.922)
C2': (5.280,87.301,60.449)
O2': (4.604,88.443,59.954)
N1: (6.245,86.575,62.627)
O4: (9.533,84.903,64.245)
O2: (7.190,88.619,63.134)
C6: (6.347,85.205,62.703)
C5: (7.407,84.588,63.232)
O3': (4.236,86.067,58.619)
Image (generated by PyMOL):
PyMOL image
show in jmol