ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1VQN:01237:01235

Extra

PDB:
ATOM 1 O3' C A1236 9.961 86.671 58.475 1.00 62.67 O
ATOM 2 P A A1237 9.995 86.706 60.077 1.00 64.16 P
ATOM 3 OP1 A A1237 11.181 85.933 60.513 1.00 61.42 O
ATOM 4 OP2 A A1237 8.651 86.341 60.589 1.00 65.17 O
ATOM 5 O5' A A1237 10.224 88.244 60.415 1.00 67.97 O
ATOM 6 C5' A A1237 11.525 88.849 60.300 1.00 72.80 C
ATOM 7 C4' A A1237 11.457 90.291 60.731 1.00 76.06 C
ATOM 8 O4' A A1237 10.559 91.000 59.844 1.00 76.42 O
ATOM 9 C3' A A1237 10.879 90.509 62.119 1.00 79.09 C
ATOM 10 O3' A A1237 11.890 90.377 63.107 1.00 85.47 O
ATOM 11 C2' A A1237 10.327 91.925 62.027 1.00 78.13 C
ATOM 12 O2' A A1237 11.316 92.920 62.196 1.00 78.63 O
ATOM 13 C1' A A1237 9.814 91.954 60.584 1.00 76.70 C
ATOM 14 N9 A A1237 8.401 91.613 60.453 1.00 75.08 N
ATOM 15 C8 A A1237 7.822 90.373 60.562 1.00 74.64 C
ATOM 16 N7 A A1237 6.524 90.382 60.399 1.00 74.47 N
ATOM 17 C5 A A1237 6.228 91.715 60.166 1.00 75.38 C
ATOM 18 C6 A A1237 5.018 92.384 59.925 1.00 77.00 C
ATOM 19 N6 A A1237 3.829 91.775 59.882 1.00 78.27 N
ATOM 20 N1 A A1237 5.069 93.720 59.729 1.00 76.94 N
ATOM 21 C2 A A1237 6.258 94.328 59.781 1.00 75.89 C
ATOM 22 N3 A A1237 7.461 93.809 60.005 1.00 75.39 N
ATOM 23 C4 A A1237 7.375 92.483 60.191 1.00 75.10 C
ATOM 24 P U A1238 11.538 89.734 64.538 1.00 90.87 P
ATOM 25 OP1 U A1238 11.587 88.253 64.388 1.00 89.46 O
ATOM 26 OP2 U A1238 10.301 90.381 65.056 1.00 90.70 O
ATOM 27 O5' U A1238 12.778 90.173 65.444 1.00 95.16 O
TER

ATOM 1 O3' C B1234 2.238 82.368 63.162 1.00 54.04 O
ATOM 2 P U B1235 3.133 82.138 61.846 1.00 56.12 P
ATOM 3 OP1 U B1235 2.249 81.729 60.724 1.00 57.30 O
ATOM 4 OP2 U B1235 4.273 81.269 62.224 1.00 55.62 O
ATOM 5 O5' U B1235 3.674 83.598 61.511 1.00 57.87 O
ATOM 6 C5' U B1235 2.753 84.649 61.154 1.00 58.36 C
ATOM 7 C4' U B1235 3.480 85.958 60.964 1.00 58.55 C
ATOM 8 O4' U B1235 4.027 86.412 62.233 1.00 57.90 O
ATOM 9 C3' U B1235 4.682 85.957 60.033 1.00 58.36 C
ATOM 10 O3' U B1235 4.305 86.006 58.663 1.00 57.53 O
ATOM 11 C2' U B1235 5.391 87.228 60.471 1.00 59.43 C
ATOM 12 O2' U B1235 4.735 88.382 59.985 1.00 60.61 O
ATOM 13 C1' U B1235 5.207 87.162 61.992 1.00 58.69 C
ATOM 14 N1 U B1235 6.334 86.487 62.653 1.00 59.25 N
ATOM 15 C2 U B1235 7.327 87.278 63.217 1.00 59.48 C
ATOM 16 O2 U B1235 7.279 88.502 63.237 1.00 59.42 O
ATOM 17 N3 U B1235 8.382 86.582 63.754 1.00 59.48 N
ATOM 18 C4 U B1235 8.539 85.211 63.796 1.00 58.83 C
ATOM 19 O4 U B1235 9.557 84.730 64.300 1.00 58.12 O
ATOM 20 C5 U B1235 7.457 84.470 63.227 1.00 58.63 C
ATOM 21 C6 U B1235 6.419 85.113 62.692 1.00 58.27 C
ATOM 22 P C B1236 5.163 85.197 57.569 1.00 57.45 P
ATOM 23 OP1 C B1236 4.392 85.174 56.300 1.00 55.92 O
ATOM 24 OP2 C B1236 5.584 83.914 58.188 1.00 57.05 O
ATOM 25 O5' C B1236 6.448 86.113 57.354 1.00 59.30 O
TER

Atoms:
OP1: (11.181,85.933,60.513)
OP2: (8.651,86.341,60.589)
C3': (10.879,90.509,62.119)
C1': (9.814,91.954,60.584)
C5': (11.525,88.849,60.300)
O4': (10.559,91.000,59.844)
C8: (7.822,90.373,60.562)
O2': (11.316,92.920,62.196)
C6: (5.018,92.384,59.925)
C5: (6.228,91.715,60.166)
C4: (7.375,92.483,60.191)
P: (9.995,86.706,60.077)
C4': (11.457,90.291,60.731)
C2': (10.327,91.925,62.027)
C2: (6.258,94.328,59.781)
N1: (5.069,93.720,59.729)
N3: (7.461,93.809,60.005)
N6: (3.829,91.775,59.882)
N7: (6.524,90.382,60.399)
N9: (8.401,91.613,60.453)
O5': (10.224,88.244,60.415)
O3': (11.890,90.377,63.107)
C4: (8.539,85.211,63.796)
N3: (8.382,86.582,63.754)
OP1: (2.249,81.729,60.724)
OP2: (4.273,81.269,62.224)
C2: (7.327,87.278,63.217)
C1': (5.207,87.162,61.992)
C3': (4.682,85.957,60.033)
O5': (3.674,83.598,61.511)
O4': (4.027,86.412,62.233)
C5': (2.753,84.649,61.154)
P: (3.133,82.138,61.846)
C4': (3.480,85.958,60.964)
C2': (5.391,87.228,60.471)
O2': (4.735,88.382,59.985)
N1: (6.334,86.487,62.653)
O4: (9.557,84.730,64.300)
O2: (7.279,88.502,63.237)
C6: (6.419,85.113,62.692)
C5: (7.457,84.470,63.227)
O3': (4.305,86.006,58.663)
Image (generated by PyMOL):
PyMOL image
show in jmol