Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5B:21541:21540
Extra
PDB:
ATOM 1 O3' U A1540 -53.772 -64.099 39.749 1.00 77.37 O
ATOM 2 P A A1541 -55.367 -63.844 39.594 1.00 97.21 P
ATOM 3 OP1 A A1541 -55.677 -63.873 38.163 1.00 97.32 O
ATOM 4 OP2 A A1541 -55.663 -62.607 40.353 1.00 96.88 O
ATOM 5 O5' A A1541 -56.084 -65.088 40.309 1.00 97.63 O
ATOM 6 C5' A A1541 -55.402 -66.265 40.706 1.00 97.88 C
ATOM 7 C4' A A1541 -55.194 -67.222 39.555 1.00 98.16 C
ATOM 8 O4' A A1541 -54.191 -68.197 39.923 1.00 98.34 O
ATOM 9 C3' A A1541 -56.364 -68.106 39.101 1.00 98.58 C
ATOM 10 O3' A A1541 -57.378 -67.422 38.351 1.00 98.53 O
ATOM 11 C2' A A1541 -55.621 -69.150 38.278 1.00 98.82 C
ATOM 12 O2' A A1541 -55.306 -68.630 36.990 1.00 98.67 O
ATOM 13 C1' A A1541 -54.312 -69.308 39.077 1.00 98.71 C
ATOM 14 N9 A A1541 -54.293 -70.552 39.869 1.00 99.09 N
ATOM 15 C8 A A1541 -53.447 -71.615 39.626 1.00 99.36 C
ATOM 16 N7 A A1541 -53.648 -72.661 40.396 1.00 99.73 N
ATOM 17 C5 A A1541 -54.722 -72.276 41.182 1.00 99.71 C
ATOM 18 C6 A A1541 -55.390 -72.956 42.194 1.00100.03 C
ATOM 19 N6 A A1541 -55.067 -74.185 42.577 1.00100.44 N
ATOM 20 N1 A A1541 -56.393 -72.307 42.805 1.00 99.94 N
ATOM 21 C2 A A1541 -56.683 -71.060 42.401 1.00 99.54 C
ATOM 22 N3 A A1541 -56.127 -70.305 41.452 1.00 99.21 N
ATOM 23 C4 A A1541 -55.138 -70.985 40.868 1.00 99.32 C
ATOM 24 P U A1542 -58.729 -68.200 37.849 1.00 83.32 P
ATOM 25 OP1 U A1542 -58.492 -69.647 37.977 1.00 83.71 O
ATOM 26 OP2 U A1542 -59.075 -67.658 36.511 1.00 83.27 O
ATOM 27 O5' U A1542 -59.831 -67.750 38.916 1.00 83.33 O
TER
ATOM 1 O3' U B1539 -51.025 -67.671 35.245 1.00 77.23 O
ATOM 2 P U B1540 -50.739 -67.967 36.806 1.00 78.35 P
ATOM 3 OP1 U B1540 -49.281 -68.003 36.998 1.00 78.26 O
ATOM 4 OP2 U B1540 -51.525 -69.158 37.180 1.00 78.75 O
ATOM 5 O5' U B1540 -51.333 -66.685 37.492 1.00 77.98 O
ATOM 6 C5' U B1540 -51.100 -66.424 38.849 1.00 77.83 C
ATOM 7 C4' U B1540 -51.603 -65.059 39.233 1.00 77.46 C
ATOM 8 O4' U B1540 -50.659 -64.058 38.774 1.00 77.12 O
ATOM 9 C3' U B1540 -52.974 -64.672 38.677 1.00 77.50 C
ATOM 10 O3' U B1540 -53.772 -64.099 39.749 1.00 77.37 O
ATOM 11 C2' U B1540 -52.633 -63.642 37.564 1.00 77.23 C
ATOM 12 O2' U B1540 -53.591 -62.635 37.346 1.00 77.07 O
ATOM 13 C1' U B1540 -51.310 -63.051 38.030 1.00 76.93 C
ATOM 14 N1 U B1540 -50.396 -62.657 36.925 1.00 76.81 N
ATOM 15 C2 U B1540 -49.876 -61.374 36.852 1.00 76.44 C
ATOM 16 O2 U B1540 -50.159 -60.493 37.628 1.00 76.18 O
ATOM 17 N3 U B1540 -49.011 -61.108 35.827 1.00 76.39 N
ATOM 18 C4 U B1540 -48.610 -62.005 34.859 1.00 76.68 C
ATOM 19 O4 U B1540 -47.821 -61.653 33.968 1.00 76.63 O
ATOM 20 C5 U B1540 -49.183 -63.315 35.004 1.00 77.04 C
ATOM 21 C6 U B1540 -50.025 -63.588 36.003 1.00 77.10 C
ATOM 22 P A B1541 -55.367 -63.844 39.594 1.00 97.21 P
ATOM 23 OP1 A B1541 -55.677 -63.873 38.163 1.00 97.32 O
ATOM 24 OP2 A B1541 -55.663 -62.607 40.353 1.00 96.88 O
ATOM 25 O5' A B1541 -56.084 -65.088 40.309 1.00 97.63 O
TER
ATOM 2 P A A1541 -55.367 -63.844 39.594 1.00 97.21 P
ATOM 3 OP1 A A1541 -55.677 -63.873 38.163 1.00 97.32 O
ATOM 4 OP2 A A1541 -55.663 -62.607 40.353 1.00 96.88 O
ATOM 5 O5' A A1541 -56.084 -65.088 40.309 1.00 97.63 O
ATOM 6 C5' A A1541 -55.402 -66.265 40.706 1.00 97.88 C
ATOM 7 C4' A A1541 -55.194 -67.222 39.555 1.00 98.16 C
ATOM 8 O4' A A1541 -54.191 -68.197 39.923 1.00 98.34 O
ATOM 9 C3' A A1541 -56.364 -68.106 39.101 1.00 98.58 C
ATOM 10 O3' A A1541 -57.378 -67.422 38.351 1.00 98.53 O
ATOM 11 C2' A A1541 -55.621 -69.150 38.278 1.00 98.82 C
ATOM 12 O2' A A1541 -55.306 -68.630 36.990 1.00 98.67 O
ATOM 13 C1' A A1541 -54.312 -69.308 39.077 1.00 98.71 C
ATOM 14 N9 A A1541 -54.293 -70.552 39.869 1.00 99.09 N
ATOM 15 C8 A A1541 -53.447 -71.615 39.626 1.00 99.36 C
ATOM 16 N7 A A1541 -53.648 -72.661 40.396 1.00 99.73 N
ATOM 17 C5 A A1541 -54.722 -72.276 41.182 1.00 99.71 C
ATOM 18 C6 A A1541 -55.390 -72.956 42.194 1.00100.03 C
ATOM 19 N6 A A1541 -55.067 -74.185 42.577 1.00100.44 N
ATOM 20 N1 A A1541 -56.393 -72.307 42.805 1.00 99.94 N
ATOM 21 C2 A A1541 -56.683 -71.060 42.401 1.00 99.54 C
ATOM 22 N3 A A1541 -56.127 -70.305 41.452 1.00 99.21 N
ATOM 23 C4 A A1541 -55.138 -70.985 40.868 1.00 99.32 C
ATOM 24 P U A1542 -58.729 -68.200 37.849 1.00 83.32 P
ATOM 25 OP1 U A1542 -58.492 -69.647 37.977 1.00 83.71 O
ATOM 26 OP2 U A1542 -59.075 -67.658 36.511 1.00 83.27 O
ATOM 27 O5' U A1542 -59.831 -67.750 38.916 1.00 83.33 O
TER
ATOM 1 O3' U B1539 -51.025 -67.671 35.245 1.00 77.23 O
ATOM 2 P U B1540 -50.739 -67.967 36.806 1.00 78.35 P
ATOM 3 OP1 U B1540 -49.281 -68.003 36.998 1.00 78.26 O
ATOM 4 OP2 U B1540 -51.525 -69.158 37.180 1.00 78.75 O
ATOM 5 O5' U B1540 -51.333 -66.685 37.492 1.00 77.98 O
ATOM 6 C5' U B1540 -51.100 -66.424 38.849 1.00 77.83 C
ATOM 7 C4' U B1540 -51.603 -65.059 39.233 1.00 77.46 C
ATOM 8 O4' U B1540 -50.659 -64.058 38.774 1.00 77.12 O
ATOM 9 C3' U B1540 -52.974 -64.672 38.677 1.00 77.50 C
ATOM 10 O3' U B1540 -53.772 -64.099 39.749 1.00 77.37 O
ATOM 11 C2' U B1540 -52.633 -63.642 37.564 1.00 77.23 C
ATOM 12 O2' U B1540 -53.591 -62.635 37.346 1.00 77.07 O
ATOM 13 C1' U B1540 -51.310 -63.051 38.030 1.00 76.93 C
ATOM 14 N1 U B1540 -50.396 -62.657 36.925 1.00 76.81 N
ATOM 15 C2 U B1540 -49.876 -61.374 36.852 1.00 76.44 C
ATOM 16 O2 U B1540 -50.159 -60.493 37.628 1.00 76.18 O
ATOM 17 N3 U B1540 -49.011 -61.108 35.827 1.00 76.39 N
ATOM 18 C4 U B1540 -48.610 -62.005 34.859 1.00 76.68 C
ATOM 19 O4 U B1540 -47.821 -61.653 33.968 1.00 76.63 O
ATOM 20 C5 U B1540 -49.183 -63.315 35.004 1.00 77.04 C
ATOM 21 C6 U B1540 -50.025 -63.588 36.003 1.00 77.10 C
ATOM 22 P A B1541 -55.367 -63.844 39.594 1.00 97.21 P
ATOM 23 OP1 A B1541 -55.677 -63.873 38.163 1.00 97.32 O
ATOM 24 OP2 A B1541 -55.663 -62.607 40.353 1.00 96.88 O
ATOM 25 O5' A B1541 -56.084 -65.088 40.309 1.00 97.63 O
TER
Atoms:
OP1: (-55.677,-63.873,38.163)
OP2: (-55.663,-62.607,40.353)
C3': (-56.364,-68.106,39.101)
C1': (-54.312,-69.308,39.077)
C5': (-55.402,-66.265,40.706)
O4': (-54.191,-68.197,39.923)
C8: (-53.447,-71.615,39.626)
O2': (-55.306,-68.630,36.990)
C6: (-55.390,-72.956,42.194)
C5: (-54.722,-72.276,41.182)
C4: (-55.138,-70.985,40.868)
P: (-55.367,-63.844,39.594)
C4': (-55.194,-67.222,39.555)
C2': (-55.621,-69.150,38.278)
C2: (-56.683,-71.060,42.401)
N1: (-56.393,-72.307,42.805)
N3: (-56.127,-70.305,41.452)
N6: (-55.067,-74.185,42.577)
N7: (-53.648,-72.661,40.396)
N9: (-54.293,-70.552,39.869)
O5': (-56.084,-65.088,40.309)
O3': (-57.378,-67.422,38.351)
OP2: (-55.663,-62.607,40.353)
C3': (-56.364,-68.106,39.101)
C1': (-54.312,-69.308,39.077)
C5': (-55.402,-66.265,40.706)
O4': (-54.191,-68.197,39.923)
C8: (-53.447,-71.615,39.626)
O2': (-55.306,-68.630,36.990)
C6: (-55.390,-72.956,42.194)
C5: (-54.722,-72.276,41.182)
C4: (-55.138,-70.985,40.868)
P: (-55.367,-63.844,39.594)
C4': (-55.194,-67.222,39.555)
C2': (-55.621,-69.150,38.278)
C2: (-56.683,-71.060,42.401)
N1: (-56.393,-72.307,42.805)
N3: (-56.127,-70.305,41.452)
N6: (-55.067,-74.185,42.577)
N7: (-53.648,-72.661,40.396)
N9: (-54.293,-70.552,39.869)
O5': (-56.084,-65.088,40.309)
O3': (-57.378,-67.422,38.351)
C4: (-48.610,-62.005,34.859)
N3: (-49.011,-61.108,35.827)
OP1: (-49.281,-68.003,36.998)
OP2: (-51.525,-69.158,37.180)
C2: (-49.876,-61.374,36.852)
C1': (-51.310,-63.051,38.030)
C3': (-52.974,-64.672,38.677)
O5': (-51.333,-66.685,37.492)
O4': (-50.659,-64.058,38.774)
C5': (-51.100,-66.424,38.849)
P: (-50.739,-67.967,36.806)
C4': (-51.603,-65.059,39.233)
C2': (-52.633,-63.642,37.564)
O2': (-53.591,-62.635,37.346)
N1: (-50.396,-62.657,36.925)
O4: (-47.821,-61.653,33.968)
O2: (-50.159,-60.493,37.628)
C6: (-50.025,-63.588,36.003)
C5: (-49.183,-63.315,35.004)
O3': (-53.772,-64.099,39.749)
N3: (-49.011,-61.108,35.827)
OP1: (-49.281,-68.003,36.998)
OP2: (-51.525,-69.158,37.180)
C2: (-49.876,-61.374,36.852)
C1': (-51.310,-63.051,38.030)
C3': (-52.974,-64.672,38.677)
O5': (-51.333,-66.685,37.492)
O4': (-50.659,-64.058,38.774)
C5': (-51.100,-66.424,38.849)
P: (-50.739,-67.967,36.806)
C4': (-51.603,-65.059,39.233)
C2': (-52.633,-63.642,37.564)
O2': (-53.591,-62.635,37.346)
N1: (-50.396,-62.657,36.925)
O4: (-47.821,-61.653,33.968)
O2: (-50.159,-60.493,37.628)
C6: (-50.025,-63.588,36.003)
C5: (-49.183,-63.315,35.004)
O3': (-53.772,-64.099,39.749)
Image (generated by PyMOL):