Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:163:1313
Extra
PDB:
ATOM 1 O3' A A 62 60.216 -48.316 126.959 1.00 59.11 O
ATOM 2 P A A 63 60.192 -49.312 125.681 1.00 52.88 P
ATOM 3 OP1 A A 63 59.714 -50.599 126.158 1.00 53.31 O
ATOM 4 OP2 A A 63 61.517 -49.262 125.072 1.00 52.82 O
ATOM 5 O5' A A 63 59.087 -48.713 124.704 1.00 52.22 O
ATOM 6 C5' A A 63 57.793 -49.323 124.608 1.00 52.16 C
ATOM 7 C4' A A 63 56.966 -48.740 123.479 1.00 51.50 C
ATOM 8 O4' A A 63 57.674 -48.922 122.237 1.00 51.18 O
ATOM 9 C3' A A 63 55.616 -49.383 123.252 1.00 51.41 C
ATOM 10 O3' A A 63 54.767 -48.451 122.584 1.00 50.85 O
ATOM 11 C2' A A 63 55.960 -50.491 122.289 1.00 51.37 C
ATOM 12 O2' A A 63 54.863 -50.977 121.552 1.00 51.11 O
ATOM 13 C1' A A 63 56.951 -49.783 121.393 1.00 51.00 C
ATOM 14 N9 A A 63 57.921 -50.663 120.793 1.00 51.13 N
ATOM 15 C8 A A 63 58.232 -51.952 121.055 1.00 51.59 C
ATOM 16 N7 A A 63 59.221 -52.389 120.338 1.00 51.58 N
ATOM 17 C5 A A 63 59.558 -51.289 119.583 1.00 51.08 C
ATOM 18 C6 A A 63 60.526 -51.097 118.625 1.00 50.84 C
ATOM 19 N6 A A 63 61.366 -52.059 118.265 1.00 51.09 N
ATOM 20 N1 A A 63 60.588 -49.875 118.069 1.00 50.36 N
ATOM 21 C2 A A 63 59.728 -48.925 118.458 1.00 50.14 C
ATOM 22 N3 A A 63 58.760 -48.984 119.353 1.00 50.33 N
ATOM 23 C4 A A 63 58.761 -50.215 119.860 1.00 50.80 C
ATOM 24 P A A 64 53.696 -47.621 123.434 1.00 47.20 P
ATOM 25 OP1 A A 64 53.463 -46.343 122.749 1.00 46.64 O
ATOM 26 OP2 A A 64 54.217 -47.612 124.842 1.00 47.77 O
ATOM 27 O5' A A 64 52.389 -48.486 123.322 1.00 47.22 O
TER
ATOM 1 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 2 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 3 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 4 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 5 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
ATOM 6 C5' U B 313 53.672 -52.437 124.901 1.00 55.79 C
ATOM 7 C4' U B 313 52.305 -52.362 125.479 1.00 55.84 C
ATOM 8 O4' U B 313 51.595 -53.607 125.182 1.00 55.98 O
ATOM 9 C3' U B 313 52.279 -52.245 126.983 1.00 56.37 C
ATOM 10 O3' U B 313 51.032 -51.691 127.340 1.00 56.24 O
ATOM 11 C2' U B 313 52.288 -53.706 127.376 1.00 56.90 C
ATOM 12 O2' U B 313 51.952 -53.965 128.706 1.00 57.45 O
ATOM 13 C1' U B 313 51.256 -54.240 126.396 1.00 56.57 C
ATOM 14 N1 U B 313 51.295 -55.704 126.199 1.00 56.90 N
ATOM 15 C2 U B 313 50.169 -56.471 126.436 1.00 57.09 C
ATOM 16 O2 U B 313 49.118 -56.007 126.799 1.00 57.00 O
ATOM 17 N3 U B 313 50.306 -57.818 126.251 1.00 57.42 N
ATOM 18 C4 U B 313 51.465 -58.464 125.864 1.00 57.58 C
ATOM 19 O4 U B 313 51.493 -59.681 125.729 1.00 57.90 O
ATOM 20 C5 U B 313 52.586 -57.624 125.629 1.00 57.36 C
ATOM 21 C6 U B 313 52.468 -56.304 125.809 1.00 57.04 C
ATOM 22 P A B 314 50.923 -50.395 128.262 1.00 51.28 P
ATOM 23 OP1 A B 314 52.275 -49.737 128.311 1.00 51.28 O
ATOM 24 OP2 A B 314 50.303 -50.837 129.480 1.00 51.80 O
ATOM 25 O5' A B 314 49.920 -49.496 127.443 1.00 50.65 O
TER
ATOM 2 P A A 63 60.192 -49.312 125.681 1.00 52.88 P
ATOM 3 OP1 A A 63 59.714 -50.599 126.158 1.00 53.31 O
ATOM 4 OP2 A A 63 61.517 -49.262 125.072 1.00 52.82 O
ATOM 5 O5' A A 63 59.087 -48.713 124.704 1.00 52.22 O
ATOM 6 C5' A A 63 57.793 -49.323 124.608 1.00 52.16 C
ATOM 7 C4' A A 63 56.966 -48.740 123.479 1.00 51.50 C
ATOM 8 O4' A A 63 57.674 -48.922 122.237 1.00 51.18 O
ATOM 9 C3' A A 63 55.616 -49.383 123.252 1.00 51.41 C
ATOM 10 O3' A A 63 54.767 -48.451 122.584 1.00 50.85 O
ATOM 11 C2' A A 63 55.960 -50.491 122.289 1.00 51.37 C
ATOM 12 O2' A A 63 54.863 -50.977 121.552 1.00 51.11 O
ATOM 13 C1' A A 63 56.951 -49.783 121.393 1.00 51.00 C
ATOM 14 N9 A A 63 57.921 -50.663 120.793 1.00 51.13 N
ATOM 15 C8 A A 63 58.232 -51.952 121.055 1.00 51.59 C
ATOM 16 N7 A A 63 59.221 -52.389 120.338 1.00 51.58 N
ATOM 17 C5 A A 63 59.558 -51.289 119.583 1.00 51.08 C
ATOM 18 C6 A A 63 60.526 -51.097 118.625 1.00 50.84 C
ATOM 19 N6 A A 63 61.366 -52.059 118.265 1.00 51.09 N
ATOM 20 N1 A A 63 60.588 -49.875 118.069 1.00 50.36 N
ATOM 21 C2 A A 63 59.728 -48.925 118.458 1.00 50.14 C
ATOM 22 N3 A A 63 58.760 -48.984 119.353 1.00 50.33 N
ATOM 23 C4 A A 63 58.761 -50.215 119.860 1.00 50.80 C
ATOM 24 P A A 64 53.696 -47.621 123.434 1.00 47.20 P
ATOM 25 OP1 A A 64 53.463 -46.343 122.749 1.00 46.64 O
ATOM 26 OP2 A A 64 54.217 -47.612 124.842 1.00 47.77 O
ATOM 27 O5' A A 64 52.389 -48.486 123.322 1.00 47.22 O
TER
ATOM 1 O3' C B 312 55.822 -54.085 123.486 1.00 47.87 O
ATOM 2 P U B 313 55.882 -53.795 125.065 1.00 56.46 P
ATOM 3 OP1 U B 313 56.650 -52.528 125.245 1.00 56.29 O
ATOM 4 OP2 U B 313 56.368 -55.042 125.737 1.00 57.11 O
ATOM 5 O5' U B 313 54.367 -53.553 125.421 1.00 56.35 O
ATOM 6 C5' U B 313 53.672 -52.437 124.901 1.00 55.79 C
ATOM 7 C4' U B 313 52.305 -52.362 125.479 1.00 55.84 C
ATOM 8 O4' U B 313 51.595 -53.607 125.182 1.00 55.98 O
ATOM 9 C3' U B 313 52.279 -52.245 126.983 1.00 56.37 C
ATOM 10 O3' U B 313 51.032 -51.691 127.340 1.00 56.24 O
ATOM 11 C2' U B 313 52.288 -53.706 127.376 1.00 56.90 C
ATOM 12 O2' U B 313 51.952 -53.965 128.706 1.00 57.45 O
ATOM 13 C1' U B 313 51.256 -54.240 126.396 1.00 56.57 C
ATOM 14 N1 U B 313 51.295 -55.704 126.199 1.00 56.90 N
ATOM 15 C2 U B 313 50.169 -56.471 126.436 1.00 57.09 C
ATOM 16 O2 U B 313 49.118 -56.007 126.799 1.00 57.00 O
ATOM 17 N3 U B 313 50.306 -57.818 126.251 1.00 57.42 N
ATOM 18 C4 U B 313 51.465 -58.464 125.864 1.00 57.58 C
ATOM 19 O4 U B 313 51.493 -59.681 125.729 1.00 57.90 O
ATOM 20 C5 U B 313 52.586 -57.624 125.629 1.00 57.36 C
ATOM 21 C6 U B 313 52.468 -56.304 125.809 1.00 57.04 C
ATOM 22 P A B 314 50.923 -50.395 128.262 1.00 51.28 P
ATOM 23 OP1 A B 314 52.275 -49.737 128.311 1.00 51.28 O
ATOM 24 OP2 A B 314 50.303 -50.837 129.480 1.00 51.80 O
ATOM 25 O5' A B 314 49.920 -49.496 127.443 1.00 50.65 O
TER
Atoms:
OP1: (59.714,-50.599,126.158)
OP2: (61.517,-49.262,125.072)
C3': (55.616,-49.383,123.252)
C1': (56.951,-49.783,121.393)
C5': (57.793,-49.323,124.608)
O4': (57.674,-48.922,122.237)
C8: (58.232,-51.952,121.055)
O2': (54.863,-50.977,121.552)
C6: (60.526,-51.097,118.625)
C5: (59.558,-51.289,119.583)
C4: (58.761,-50.215,119.860)
P: (60.192,-49.312,125.681)
C4': (56.966,-48.740,123.479)
C2': (55.960,-50.491,122.289)
C2: (59.728,-48.925,118.458)
N1: (60.588,-49.875,118.069)
N3: (58.760,-48.984,119.353)
N6: (61.366,-52.059,118.265)
N7: (59.221,-52.389,120.338)
N9: (57.921,-50.663,120.793)
O5': (59.087,-48.713,124.704)
O3': (54.767,-48.451,122.584)
OP2: (61.517,-49.262,125.072)
C3': (55.616,-49.383,123.252)
C1': (56.951,-49.783,121.393)
C5': (57.793,-49.323,124.608)
O4': (57.674,-48.922,122.237)
C8: (58.232,-51.952,121.055)
O2': (54.863,-50.977,121.552)
C6: (60.526,-51.097,118.625)
C5: (59.558,-51.289,119.583)
C4: (58.761,-50.215,119.860)
P: (60.192,-49.312,125.681)
C4': (56.966,-48.740,123.479)
C2': (55.960,-50.491,122.289)
C2: (59.728,-48.925,118.458)
N1: (60.588,-49.875,118.069)
N3: (58.760,-48.984,119.353)
N6: (61.366,-52.059,118.265)
N7: (59.221,-52.389,120.338)
N9: (57.921,-50.663,120.793)
O5': (59.087,-48.713,124.704)
O3': (54.767,-48.451,122.584)
C4: (51.465,-58.464,125.864)
N3: (50.306,-57.818,126.251)
OP1: (56.650,-52.528,125.245)
OP2: (56.368,-55.042,125.737)
C2: (50.169,-56.471,126.436)
C1': (51.256,-54.240,126.396)
C3': (52.279,-52.245,126.983)
O5': (54.367,-53.553,125.421)
O4': (51.595,-53.607,125.182)
C5': (53.672,-52.437,124.901)
P: (55.882,-53.795,125.065)
C4': (52.305,-52.362,125.479)
C2': (52.288,-53.706,127.376)
O2': (51.952,-53.965,128.706)
N1: (51.295,-55.704,126.199)
O4: (51.493,-59.681,125.729)
O2: (49.118,-56.007,126.799)
C6: (52.468,-56.304,125.809)
C5: (52.586,-57.624,125.629)
O3': (51.032,-51.691,127.340)
N3: (50.306,-57.818,126.251)
OP1: (56.650,-52.528,125.245)
OP2: (56.368,-55.042,125.737)
C2: (50.169,-56.471,126.436)
C1': (51.256,-54.240,126.396)
C3': (52.279,-52.245,126.983)
O5': (54.367,-53.553,125.421)
O4': (51.595,-53.607,125.182)
C5': (53.672,-52.437,124.901)
P: (55.882,-53.795,125.065)
C4': (52.305,-52.362,125.479)
C2': (52.288,-53.706,127.376)
O2': (51.952,-53.965,128.706)
N1: (51.295,-55.704,126.199)
O4: (51.493,-59.681,125.729)
O2: (49.118,-56.007,126.799)
C6: (52.468,-56.304,125.809)
C5: (52.586,-57.624,125.629)
O3': (51.032,-51.691,127.340)
Image (generated by PyMOL):