Doublet info:
Details
Nucleotide types:
AU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12347:12268
Extra
PDB:
ATOM 1 O3' C A2346 6.780 -34.527 125.213 1.00 59.67 O
ATOM 2 P A A2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 3 OP1 A A2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 4 OP2 A A2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 5 O5' A A2347 7.433 -32.241 124.501 1.00 62.37 O
ATOM 6 C5' A A2347 8.357 -31.258 124.142 1.00 62.04 C
ATOM 7 C4' A A2347 8.040 -29.935 124.739 1.00 62.13 C
ATOM 8 O4' A A2347 8.019 -30.016 126.190 1.00 62.65 O
ATOM 9 C3' A A2347 9.074 -28.871 124.479 1.00 61.83 C
ATOM 10 O3' A A2347 9.040 -28.387 123.165 1.00 61.35 O
ATOM 11 C2' A A2347 8.714 -27.843 125.522 1.00 62.14 C
ATOM 12 O2' A A2347 7.475 -27.214 125.182 1.00 62.10 O
ATOM 13 C1' A A2347 8.473 -28.768 126.717 1.00 62.66 C
ATOM 14 N9 A A2347 9.720 -28.973 127.533 1.00 62.85 N
ATOM 15 C8 A A2347 10.451 -27.991 128.241 1.00 62.95 C
ATOM 16 N7 A A2347 11.517 -28.381 128.923 1.00 63.14 N
ATOM 17 C5 A A2347 11.483 -29.724 128.632 1.00 63.16 C
ATOM 18 C6 A A2347 12.354 -30.703 129.041 1.00 63.34 C
ATOM 19 N6 A A2347 13.387 -30.435 129.820 1.00 63.52 N
ATOM 20 N1 A A2347 12.072 -31.953 128.598 1.00 63.34 N
ATOM 21 C2 A A2347 10.994 -32.158 127.796 1.00 63.16 C
ATOM 22 N3 A A2347 10.108 -31.330 127.315 1.00 62.98 N
ATOM 23 C4 A A2347 10.420 -30.121 127.788 1.00 62.99 C
ATOM 24 P U A2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 25 OP1 U A2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 26 OP2 U A2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 27 O5' U A2348 11.518 -28.137 122.841 1.00 55.29 O
TER
ATOM 1 O3' A B2267 17.850 -30.290 137.199 1.00 60.40 O
ATOM 2 P U B2268 17.776 -28.696 136.959 1.00 67.43 P
ATOM 3 OP1 U B2268 19.161 -28.214 136.798 1.00 67.25 O
ATOM 4 OP2 U B2268 16.948 -28.122 138.035 1.00 67.89 O
ATOM 5 O5' U B2268 17.028 -28.580 135.583 1.00 66.88 O
ATOM 6 C5' U B2268 17.657 -29.017 134.396 1.00 66.40 C
ATOM 7 C4' U B2268 16.668 -29.119 133.275 1.00 66.01 C
ATOM 8 O4' U B2268 15.668 -30.126 133.594 1.00 66.30 O
ATOM 9 C3' U B2268 15.836 -27.877 133.019 1.00 65.84 C
ATOM 10 O3' U B2268 16.525 -26.855 132.302 1.00 65.43 O
ATOM 11 C2' U B2268 14.643 -28.459 132.290 1.00 65.69 C
ATOM 12 O2' U B2268 15.019 -28.880 130.994 1.00 65.19 O
ATOM 13 C1' U B2268 14.410 -29.707 133.113 1.00 66.15 C
ATOM 14 N1 U B2268 13.504 -29.463 134.263 1.00 66.66 N
ATOM 15 C2 U B2268 12.156 -29.371 134.001 1.00 66.65 C
ATOM 16 O2 U B2268 11.695 -29.453 132.897 1.00 66.25 O
ATOM 17 N3 U B2268 11.325 -29.183 135.050 1.00 67.12 N
ATOM 18 C4 U B2268 11.693 -29.075 136.354 1.00 67.62 C
ATOM 19 O4 U B2268 10.820 -28.908 137.214 1.00 68.04 O
ATOM 20 C5 U B2268 13.109 -29.190 136.560 1.00 67.61 C
ATOM 21 C6 U B2268 13.955 -29.381 135.543 1.00 67.14 C
ATOM 22 P U B2269 16.324 -25.314 132.724 1.00 60.81 P
ATOM 23 OP1 U B2269 17.294 -24.509 131.936 1.00 60.38 O
ATOM 24 OP2 U B2269 16.371 -25.261 134.221 1.00 61.41 O
ATOM 25 O5' U B2269 14.851 -24.992 132.227 1.00 60.69 O
TER
ATOM 2 P A A2347 7.774 -33.762 124.229 1.00 62.42 P
ATOM 3 OP1 A A2347 7.389 -34.124 122.845 1.00 62.05 O
ATOM 4 OP2 A A2347 9.145 -34.068 124.693 1.00 62.47 O
ATOM 5 O5' A A2347 7.433 -32.241 124.501 1.00 62.37 O
ATOM 6 C5' A A2347 8.357 -31.258 124.142 1.00 62.04 C
ATOM 7 C4' A A2347 8.040 -29.935 124.739 1.00 62.13 C
ATOM 8 O4' A A2347 8.019 -30.016 126.190 1.00 62.65 O
ATOM 9 C3' A A2347 9.074 -28.871 124.479 1.00 61.83 C
ATOM 10 O3' A A2347 9.040 -28.387 123.165 1.00 61.35 O
ATOM 11 C2' A A2347 8.714 -27.843 125.522 1.00 62.14 C
ATOM 12 O2' A A2347 7.475 -27.214 125.182 1.00 62.10 O
ATOM 13 C1' A A2347 8.473 -28.768 126.717 1.00 62.66 C
ATOM 14 N9 A A2347 9.720 -28.973 127.533 1.00 62.85 N
ATOM 15 C8 A A2347 10.451 -27.991 128.241 1.00 62.95 C
ATOM 16 N7 A A2347 11.517 -28.381 128.923 1.00 63.14 N
ATOM 17 C5 A A2347 11.483 -29.724 128.632 1.00 63.16 C
ATOM 18 C6 A A2347 12.354 -30.703 129.041 1.00 63.34 C
ATOM 19 N6 A A2347 13.387 -30.435 129.820 1.00 63.52 N
ATOM 20 N1 A A2347 12.072 -31.953 128.598 1.00 63.34 N
ATOM 21 C2 A A2347 10.994 -32.158 127.796 1.00 63.16 C
ATOM 22 N3 A A2347 10.108 -31.330 127.315 1.00 62.98 N
ATOM 23 C4 A A2347 10.420 -30.121 127.788 1.00 62.99 C
ATOM 24 P U A2348 10.208 -28.769 122.149 1.00 55.24 P
ATOM 25 OP1 U A2348 9.905 -28.067 120.869 1.00 54.79 O
ATOM 26 OP2 U A2348 10.316 -30.252 122.141 1.00 55.38 O
ATOM 27 O5' U A2348 11.518 -28.137 122.841 1.00 55.29 O
TER
ATOM 1 O3' A B2267 17.850 -30.290 137.199 1.00 60.40 O
ATOM 2 P U B2268 17.776 -28.696 136.959 1.00 67.43 P
ATOM 3 OP1 U B2268 19.161 -28.214 136.798 1.00 67.25 O
ATOM 4 OP2 U B2268 16.948 -28.122 138.035 1.00 67.89 O
ATOM 5 O5' U B2268 17.028 -28.580 135.583 1.00 66.88 O
ATOM 6 C5' U B2268 17.657 -29.017 134.396 1.00 66.40 C
ATOM 7 C4' U B2268 16.668 -29.119 133.275 1.00 66.01 C
ATOM 8 O4' U B2268 15.668 -30.126 133.594 1.00 66.30 O
ATOM 9 C3' U B2268 15.836 -27.877 133.019 1.00 65.84 C
ATOM 10 O3' U B2268 16.525 -26.855 132.302 1.00 65.43 O
ATOM 11 C2' U B2268 14.643 -28.459 132.290 1.00 65.69 C
ATOM 12 O2' U B2268 15.019 -28.880 130.994 1.00 65.19 O
ATOM 13 C1' U B2268 14.410 -29.707 133.113 1.00 66.15 C
ATOM 14 N1 U B2268 13.504 -29.463 134.263 1.00 66.66 N
ATOM 15 C2 U B2268 12.156 -29.371 134.001 1.00 66.65 C
ATOM 16 O2 U B2268 11.695 -29.453 132.897 1.00 66.25 O
ATOM 17 N3 U B2268 11.325 -29.183 135.050 1.00 67.12 N
ATOM 18 C4 U B2268 11.693 -29.075 136.354 1.00 67.62 C
ATOM 19 O4 U B2268 10.820 -28.908 137.214 1.00 68.04 O
ATOM 20 C5 U B2268 13.109 -29.190 136.560 1.00 67.61 C
ATOM 21 C6 U B2268 13.955 -29.381 135.543 1.00 67.14 C
ATOM 22 P U B2269 16.324 -25.314 132.724 1.00 60.81 P
ATOM 23 OP1 U B2269 17.294 -24.509 131.936 1.00 60.38 O
ATOM 24 OP2 U B2269 16.371 -25.261 134.221 1.00 61.41 O
ATOM 25 O5' U B2269 14.851 -24.992 132.227 1.00 60.69 O
TER
Atoms:
OP1: (7.389,-34.124,122.845)
OP2: (9.145,-34.068,124.693)
C3': (9.074,-28.871,124.479)
C1': (8.473,-28.768,126.717)
C5': (8.357,-31.258,124.142)
O4': (8.019,-30.016,126.190)
C8: (10.451,-27.991,128.241)
O2': (7.475,-27.214,125.182)
C6: (12.354,-30.703,129.041)
C5: (11.483,-29.724,128.632)
C4: (10.420,-30.121,127.788)
P: (7.774,-33.762,124.229)
C4': (8.040,-29.935,124.739)
C2': (8.714,-27.843,125.522)
C2: (10.994,-32.158,127.796)
N1: (12.072,-31.953,128.598)
N3: (10.108,-31.330,127.315)
N6: (13.387,-30.435,129.820)
N7: (11.517,-28.381,128.923)
N9: (9.720,-28.973,127.533)
O5': (7.433,-32.241,124.501)
O3': (9.040,-28.387,123.165)
OP2: (9.145,-34.068,124.693)
C3': (9.074,-28.871,124.479)
C1': (8.473,-28.768,126.717)
C5': (8.357,-31.258,124.142)
O4': (8.019,-30.016,126.190)
C8: (10.451,-27.991,128.241)
O2': (7.475,-27.214,125.182)
C6: (12.354,-30.703,129.041)
C5: (11.483,-29.724,128.632)
C4: (10.420,-30.121,127.788)
P: (7.774,-33.762,124.229)
C4': (8.040,-29.935,124.739)
C2': (8.714,-27.843,125.522)
C2: (10.994,-32.158,127.796)
N1: (12.072,-31.953,128.598)
N3: (10.108,-31.330,127.315)
N6: (13.387,-30.435,129.820)
N7: (11.517,-28.381,128.923)
N9: (9.720,-28.973,127.533)
O5': (7.433,-32.241,124.501)
O3': (9.040,-28.387,123.165)
C4: (11.693,-29.075,136.354)
N3: (11.325,-29.183,135.050)
OP1: (19.161,-28.214,136.798)
OP2: (16.948,-28.122,138.035)
C2: (12.156,-29.371,134.001)
C1': (14.410,-29.707,133.113)
C3': (15.836,-27.877,133.019)
O5': (17.028,-28.580,135.583)
O4': (15.668,-30.126,133.594)
C5': (17.657,-29.017,134.396)
P: (17.776,-28.696,136.959)
C4': (16.668,-29.119,133.275)
C2': (14.643,-28.459,132.290)
O2': (15.019,-28.880,130.994)
N1: (13.504,-29.463,134.263)
O4: (10.820,-28.908,137.214)
O2: (11.695,-29.453,132.897)
C6: (13.955,-29.381,135.543)
C5: (13.109,-29.190,136.560)
O3': (16.525,-26.855,132.302)
N3: (11.325,-29.183,135.050)
OP1: (19.161,-28.214,136.798)
OP2: (16.948,-28.122,138.035)
C2: (12.156,-29.371,134.001)
C1': (14.410,-29.707,133.113)
C3': (15.836,-27.877,133.019)
O5': (17.028,-28.580,135.583)
O4': (15.668,-30.126,133.594)
C5': (17.657,-29.017,134.396)
P: (17.776,-28.696,136.959)
C4': (16.668,-29.119,133.275)
C2': (14.643,-28.459,132.290)
O2': (15.019,-28.880,130.994)
N1: (13.504,-29.463,134.263)
O4: (10.820,-28.908,137.214)
O2: (11.695,-29.453,132.897)
C6: (13.955,-29.381,135.543)
C5: (13.109,-29.190,136.560)
O3': (16.525,-26.855,132.302)
Image (generated by PyMOL):