Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:A25:A9
Extra
PDB:
ATOM 1 O3' A A 24 30.423 -14.712 19.061 1.00 27.82 O
ATOM 2 P G A 25 29.015 -14.153 19.571 1.00 27.65 P
ATOM 3 OP1 G A 25 29.227 -13.744 20.979 1.00 29.68 O
ATOM 4 OP2 G A 25 27.962 -15.153 19.253 1.00 26.26 O
ATOM 5 O5' G A 25 28.784 -12.862 18.667 1.00 24.94 O
ATOM 6 C5' G A 25 28.674 -11.565 19.252 1.00 23.01 C
ATOM 7 C4' G A 25 27.415 -10.890 18.774 1.00 20.40 C
ATOM 8 O4' G A 25 27.605 -10.464 17.397 1.00 20.11 O
ATOM 9 C3' G A 25 26.180 -11.785 18.775 1.00 20.09 C
ATOM 10 O3' G A 25 24.989 -11.036 19.005 1.00 18.55 O
ATOM 11 C2' G A 25 26.158 -12.299 17.346 1.00 19.79 C
ATOM 12 O2' G A 25 24.876 -12.710 16.920 1.00 22.33 O
ATOM 13 C1' G A 25 26.614 -11.055 16.591 1.00 19.36 C
ATOM 14 N9 G A 25 27.182 -11.336 15.282 1.00 18.53 N
ATOM 15 C8 G A 25 26.924 -12.428 14.494 1.00 21.60 C
ATOM 16 N7 G A 25 27.520 -12.379 13.337 1.00 21.92 N
ATOM 17 C5 G A 25 28.229 -11.187 13.373 1.00 20.73 C
ATOM 18 C6 G A 25 29.051 -10.585 12.392 1.00 22.17 C
ATOM 19 O6 G A 25 29.310 -10.992 11.239 1.00 24.89 O
ATOM 20 N1 G A 25 29.588 -9.387 12.851 1.00 18.48 N
ATOM 21 C2 G A 25 29.351 -8.841 14.086 1.00 17.61 C
ATOM 22 N2 G A 25 29.974 -7.692 14.340 1.00 20.34 N
ATOM 23 N3 G A 25 28.570 -9.382 15.001 1.00 14.65 N
ATOM 24 C4 G A 25 28.047 -10.545 14.580 1.00 17.40 C
ATOM 25 P U A 26 24.825 -10.191 20.358 1.00 19.88 P
ATOM 26 OP1 U A 26 25.916 -10.469 21.335 1.00 22.12 O
ATOM 27 OP2 U A 26 23.414 -10.336 20.774 1.00 19.04 O
ATOM 28 O5' U A 26 25.057 -8.699 19.869 1.00 22.28 O
TER
ATOM 1 O3' U B 8 26.753 -19.039 13.108 1.00 25.35 O
ATOM 2 P G B 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G B 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G B 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G B 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G B 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G B 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G B 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G B 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G B 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G B 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G B 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G B 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G B 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G B 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G B 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G B 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G B 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G B 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G B 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G B 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G B 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G B 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G B 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C B 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C B 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C B 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C B 10 20.374 -15.684 11.855 1.00 32.60 O
TER
ATOM 2 P G A 25 29.015 -14.153 19.571 1.00 27.65 P
ATOM 3 OP1 G A 25 29.227 -13.744 20.979 1.00 29.68 O
ATOM 4 OP2 G A 25 27.962 -15.153 19.253 1.00 26.26 O
ATOM 5 O5' G A 25 28.784 -12.862 18.667 1.00 24.94 O
ATOM 6 C5' G A 25 28.674 -11.565 19.252 1.00 23.01 C
ATOM 7 C4' G A 25 27.415 -10.890 18.774 1.00 20.40 C
ATOM 8 O4' G A 25 27.605 -10.464 17.397 1.00 20.11 O
ATOM 9 C3' G A 25 26.180 -11.785 18.775 1.00 20.09 C
ATOM 10 O3' G A 25 24.989 -11.036 19.005 1.00 18.55 O
ATOM 11 C2' G A 25 26.158 -12.299 17.346 1.00 19.79 C
ATOM 12 O2' G A 25 24.876 -12.710 16.920 1.00 22.33 O
ATOM 13 C1' G A 25 26.614 -11.055 16.591 1.00 19.36 C
ATOM 14 N9 G A 25 27.182 -11.336 15.282 1.00 18.53 N
ATOM 15 C8 G A 25 26.924 -12.428 14.494 1.00 21.60 C
ATOM 16 N7 G A 25 27.520 -12.379 13.337 1.00 21.92 N
ATOM 17 C5 G A 25 28.229 -11.187 13.373 1.00 20.73 C
ATOM 18 C6 G A 25 29.051 -10.585 12.392 1.00 22.17 C
ATOM 19 O6 G A 25 29.310 -10.992 11.239 1.00 24.89 O
ATOM 20 N1 G A 25 29.588 -9.387 12.851 1.00 18.48 N
ATOM 21 C2 G A 25 29.351 -8.841 14.086 1.00 17.61 C
ATOM 22 N2 G A 25 29.974 -7.692 14.340 1.00 20.34 N
ATOM 23 N3 G A 25 28.570 -9.382 15.001 1.00 14.65 N
ATOM 24 C4 G A 25 28.047 -10.545 14.580 1.00 17.40 C
ATOM 25 P U A 26 24.825 -10.191 20.358 1.00 19.88 P
ATOM 26 OP1 U A 26 25.916 -10.469 21.335 1.00 22.12 O
ATOM 27 OP2 U A 26 23.414 -10.336 20.774 1.00 19.04 O
ATOM 28 O5' U A 26 25.057 -8.699 19.869 1.00 22.28 O
TER
ATOM 1 O3' U B 8 26.753 -19.039 13.108 1.00 25.35 O
ATOM 2 P G B 9 25.537 -18.479 12.214 1.00 28.33 P
ATOM 3 OP1 G B 9 24.311 -19.211 12.615 1.00 27.98 O
ATOM 4 OP2 G B 9 25.945 -18.477 10.783 1.00 28.77 O
ATOM 5 O5' G B 9 25.403 -16.969 12.706 1.00 28.29 O
ATOM 6 C5' G B 9 25.157 -16.679 14.079 1.00 26.02 C
ATOM 7 C4' G B 9 24.215 -15.507 14.203 1.00 26.08 C
ATOM 8 O4' G B 9 24.908 -14.271 13.939 1.00 26.86 O
ATOM 9 C3' G B 9 23.065 -15.481 13.211 1.00 25.57 C
ATOM 10 O3' G B 9 22.001 -16.283 13.674 1.00 27.16 O
ATOM 11 C2' G B 9 22.627 -14.028 13.260 1.00 24.61 C
ATOM 12 O2' G B 9 21.733 -13.837 14.331 1.00 24.66 O
ATOM 13 C1' G B 9 23.956 -13.306 13.535 1.00 24.74 C
ATOM 14 N9 G B 9 24.490 -12.548 12.409 1.00 22.71 N
ATOM 15 C8 G B 9 24.674 -12.971 11.117 1.00 21.72 C
ATOM 16 N7 G B 9 25.090 -12.024 10.323 1.00 21.83 N
ATOM 17 C5 G B 9 25.203 -10.918 11.149 1.00 22.90 C
ATOM 18 C6 G B 9 25.572 -9.585 10.852 1.00 26.48 C
ATOM 19 O6 G B 9 25.831 -9.084 9.747 1.00 29.71 O
ATOM 20 N1 G B 9 25.585 -8.792 11.999 1.00 24.96 N
ATOM 21 C2 G B 9 25.235 -9.222 13.259 1.00 22.72 C
ATOM 22 N2 G B 9 25.288 -8.313 14.244 1.00 21.91 N
ATOM 23 N3 G B 9 24.854 -10.452 13.533 1.00 21.87 N
ATOM 24 C4 G B 9 24.864 -11.238 12.442 1.00 21.23 C
ATOM 25 P C B 10 20.988 -16.932 12.628 1.00 31.03 P
ATOM 26 OP1 C B 10 19.902 -17.559 13.433 1.00 32.05 O
ATOM 27 OP2 C B 10 21.777 -17.753 11.666 1.00 27.22 O
ATOM 28 O5' C B 10 20.374 -15.684 11.855 1.00 32.60 O
TER
Atoms:
OP1: (29.227,-13.744,20.979)
OP2: (27.962,-15.153,19.253)
C3': (26.180,-11.785,18.775)
C1': (26.614,-11.055,16.591)
C5': (28.674,-11.565,19.252)
O6: (29.310,-10.992,11.239)
O4': (27.605,-10.464,17.397)
C8: (26.924,-12.428,14.494)
C2: (29.351,-8.841,14.086)
C6: (29.051,-10.585,12.392)
C5: (28.229,-11.187,13.373)
C4: (28.047,-10.545,14.580)
P: (29.015,-14.153,19.571)
C4': (27.415,-10.890,18.774)
C2': (26.158,-12.299,17.346)
O2': (24.876,-12.710,16.920)
N1: (29.588,-9.387,12.851)
N2: (29.974,-7.692,14.340)
N3: (28.570,-9.382,15.001)
N7: (27.520,-12.379,13.337)
N9: (27.182,-11.336,15.282)
O5': (28.784,-12.862,18.667)
O3': (24.989,-11.036,19.005)
OP2: (27.962,-15.153,19.253)
C3': (26.180,-11.785,18.775)
C1': (26.614,-11.055,16.591)
C5': (28.674,-11.565,19.252)
O6: (29.310,-10.992,11.239)
O4': (27.605,-10.464,17.397)
C8: (26.924,-12.428,14.494)
C2: (29.351,-8.841,14.086)
C6: (29.051,-10.585,12.392)
C5: (28.229,-11.187,13.373)
C4: (28.047,-10.545,14.580)
P: (29.015,-14.153,19.571)
C4': (27.415,-10.890,18.774)
C2': (26.158,-12.299,17.346)
O2': (24.876,-12.710,16.920)
N1: (29.588,-9.387,12.851)
N2: (29.974,-7.692,14.340)
N3: (28.570,-9.382,15.001)
N7: (27.520,-12.379,13.337)
N9: (27.182,-11.336,15.282)
O5': (28.784,-12.862,18.667)
O3': (24.989,-11.036,19.005)
OP1: (24.311,-19.211,12.615)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
OP2: (25.945,-18.477,10.783)
C3': (23.065,-15.481,13.211)
C1': (23.956,-13.306,13.535)
C5': (25.157,-16.679,14.079)
O6: (25.831,-9.084,9.747)
O4': (24.908,-14.271,13.939)
C8: (24.674,-12.971,11.117)
C2: (25.235,-9.222,13.259)
C6: (25.572,-9.585,10.852)
C5: (25.203,-10.918,11.149)
C4: (24.864,-11.238,12.442)
P: (25.537,-18.479,12.214)
C4': (24.215,-15.507,14.203)
C2': (22.627,-14.028,13.260)
O2': (21.733,-13.837,14.331)
N1: (25.585,-8.792,11.999)
N2: (25.288,-8.313,14.244)
N3: (24.854,-10.452,13.533)
N7: (25.090,-12.024,10.323)
N9: (24.490,-12.548,12.409)
O5': (25.403,-16.969,12.706)
O3': (22.001,-16.283,13.674)
Image (generated by PyMOL):