Doublet info:
Details
Nucleotide types:
GG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1DDY:G25:G9
Extra
PDB:
ATOM 1 O3' A A 24 0.394 -44.783 -8.850 1.00 26.38 O
ATOM 2 P G A 25 1.147 -44.077 -7.630 1.00 23.32 P
ATOM 3 OP1 G A 25 2.556 -43.841 -8.057 1.00 29.12 O
ATOM 4 OP2 G A 25 0.875 -44.956 -6.464 1.00 20.09 O
ATOM 5 O5' G A 25 0.375 -42.693 -7.447 1.00 18.61 O
ATOM 6 C5' G A 25 1.074 -41.448 -7.436 1.00 16.76 C
ATOM 7 C4' G A 25 1.101 -40.869 -6.035 1.00 14.16 C
ATOM 8 O4' G A 25 -0.245 -40.467 -5.645 1.00 12.64 O
ATOM 9 C3' G A 25 1.583 -41.831 -4.952 1.00 12.67 C
ATOM 10 O3' G A 25 2.245 -41.151 -3.891 1.00 12.12 O
ATOM 11 C2' G A 25 0.280 -42.361 -4.391 1.00 11.01 C
ATOM 12 O2' G A 25 0.458 -42.793 -3.068 1.00 14.88 O
ATOM 13 C1' G A 25 -0.582 -41.108 -4.438 1.00 10.28 C
ATOM 14 N9 G A 25 -2.013 -41.366 -4.428 1.00 7.70 N
ATOM 15 C8 G A 25 -2.648 -42.463 -3.900 1.00 7.64 C
ATOM 16 N7 G A 25 -3.949 -42.390 -3.982 1.00 9.09 N
ATOM 17 C5 G A 25 -4.187 -41.175 -4.617 1.00 7.17 C
ATOM 18 C6 G A 25 -5.407 -40.551 -4.967 1.00 5.70 C
ATOM 19 O6 G A 25 -6.558 -40.954 -4.767 1.00 12.38 O
ATOM 20 N1 G A 25 -5.199 -39.336 -5.604 1.00 3.32 N
ATOM 21 C2 G A 25 -3.972 -38.789 -5.870 1.00 7.15 C
ATOM 22 N2 G A 25 -3.985 -37.615 -6.513 1.00 8.93 N
ATOM 23 N3 G A 25 -2.816 -39.353 -5.538 1.00 5.38 N
ATOM 24 C4 G A 25 -3.001 -40.539 -4.917 1.00 7.77 C
ATOM 25 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 26 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 27 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 28 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
ATOM 2 P G A 25 1.147 -44.077 -7.630 1.00 23.32 P
ATOM 3 OP1 G A 25 2.556 -43.841 -8.057 1.00 29.12 O
ATOM 4 OP2 G A 25 0.875 -44.956 -6.464 1.00 20.09 O
ATOM 5 O5' G A 25 0.375 -42.693 -7.447 1.00 18.61 O
ATOM 6 C5' G A 25 1.074 -41.448 -7.436 1.00 16.76 C
ATOM 7 C4' G A 25 1.101 -40.869 -6.035 1.00 14.16 C
ATOM 8 O4' G A 25 -0.245 -40.467 -5.645 1.00 12.64 O
ATOM 9 C3' G A 25 1.583 -41.831 -4.952 1.00 12.67 C
ATOM 10 O3' G A 25 2.245 -41.151 -3.891 1.00 12.12 O
ATOM 11 C2' G A 25 0.280 -42.361 -4.391 1.00 11.01 C
ATOM 12 O2' G A 25 0.458 -42.793 -3.068 1.00 14.88 O
ATOM 13 C1' G A 25 -0.582 -41.108 -4.438 1.00 10.28 C
ATOM 14 N9 G A 25 -2.013 -41.366 -4.428 1.00 7.70 N
ATOM 15 C8 G A 25 -2.648 -42.463 -3.900 1.00 7.64 C
ATOM 16 N7 G A 25 -3.949 -42.390 -3.982 1.00 9.09 N
ATOM 17 C5 G A 25 -4.187 -41.175 -4.617 1.00 7.17 C
ATOM 18 C6 G A 25 -5.407 -40.551 -4.967 1.00 5.70 C
ATOM 19 O6 G A 25 -6.558 -40.954 -4.767 1.00 12.38 O
ATOM 20 N1 G A 25 -5.199 -39.336 -5.604 1.00 3.32 N
ATOM 21 C2 G A 25 -3.972 -38.789 -5.870 1.00 7.15 C
ATOM 22 N2 G A 25 -3.985 -37.615 -6.513 1.00 8.93 N
ATOM 23 N3 G A 25 -2.816 -39.353 -5.538 1.00 5.38 N
ATOM 24 C4 G A 25 -3.001 -40.539 -4.917 1.00 7.77 C
ATOM 25 P U A 26 3.576 -40.300 -4.193 1.00 16.33 P
ATOM 26 OP1 U A 26 4.187 -40.711 -5.491 1.00 16.08 O
ATOM 27 OP2 U A 26 4.404 -40.323 -2.959 1.00 14.24 O
ATOM 28 O5' U A 26 2.989 -38.836 -4.394 1.00 15.97 O
TER
ATOM 1 O3' U B 8 -3.486 -49.007 -2.799 1.00 19.43 O
ATOM 2 P G B 9 -3.948 -48.523 -1.335 1.00 20.12 P
ATOM 3 OP1 G B 9 -3.195 -49.319 -0.328 1.00 20.43 O
ATOM 4 OP2 G B 9 -5.442 -48.498 -1.292 1.00 13.81 O
ATOM 5 O5' G B 9 -3.391 -47.034 -1.266 1.00 21.35 O
ATOM 6 C5' G B 9 -2.040 -46.747 -1.622 1.00 20.06 C
ATOM 7 C4' G B 9 -1.546 -45.531 -0.873 1.00 19.77 C
ATOM 8 O4' G B 9 -2.065 -44.310 -1.447 1.00 19.98 O
ATOM 9 C3' G B 9 -1.973 -45.446 0.579 1.00 18.74 C
ATOM 10 O3' G B 9 -1.130 -46.273 1.352 1.00 20.44 O
ATOM 11 C2' G B 9 -1.744 -43.973 0.896 1.00 19.36 C
ATOM 12 O2' G B 9 -0.387 -43.720 1.187 1.00 23.50 O
ATOM 13 C1' G B 9 -2.063 -43.303 -0.447 1.00 18.15 C
ATOM 14 N9 G B 9 -3.324 -42.575 -0.522 1.00 13.74 N
ATOM 15 C8 G B 9 -4.566 -43.050 -0.194 1.00 12.68 C
ATOM 16 N7 G B 9 -5.520 -42.185 -0.413 1.00 13.95 N
ATOM 17 C5 G B 9 -4.865 -41.067 -0.908 1.00 10.53 C
ATOM 18 C6 G B 9 -5.382 -39.816 -1.337 1.00 8.93 C
ATOM 19 O6 G B 9 -6.563 -39.445 -1.386 1.00 7.02 O
ATOM 20 N1 G B 9 -4.365 -38.961 -1.750 1.00 6.39 N
ATOM 21 C2 G B 9 -3.031 -39.272 -1.759 1.00 6.23 C
ATOM 22 N2 G B 9 -2.212 -38.311 -2.190 1.00 7.53 N
ATOM 23 N3 G B 9 -2.537 -40.439 -1.374 1.00 7.02 N
ATOM 24 C4 G B 9 -3.505 -41.283 -0.964 1.00 10.31 C
ATOM 25 P C B 10 -1.713 -46.996 2.650 1.00 27.35 P
ATOM 26 OP1 C B 10 -0.554 -47.528 3.425 1.00 26.28 O
ATOM 27 OP2 C B 10 -2.813 -47.910 2.228 1.00 26.56 O
ATOM 28 O5' C B 10 -2.383 -45.802 3.459 1.00 28.21 O
TER
Atoms:
OP1: (2.556,-43.841,-8.057)
OP2: (0.875,-44.956,-6.464)
C3': (1.583,-41.831,-4.952)
C1': (-0.582,-41.108,-4.438)
C5': (1.074,-41.448,-7.436)
O6: (-6.558,-40.954,-4.767)
O4': (-0.245,-40.467,-5.645)
C8: (-2.648,-42.463,-3.900)
C2: (-3.972,-38.789,-5.870)
C6: (-5.407,-40.551,-4.967)
C5: (-4.187,-41.175,-4.617)
C4: (-3.001,-40.539,-4.917)
P: (1.147,-44.077,-7.630)
C4': (1.101,-40.869,-6.035)
C2': (0.280,-42.361,-4.391)
O2': (0.458,-42.793,-3.068)
N1: (-5.199,-39.336,-5.604)
N2: (-3.985,-37.615,-6.513)
N3: (-2.816,-39.353,-5.538)
N7: (-3.949,-42.390,-3.982)
N9: (-2.013,-41.366,-4.428)
O5': (0.375,-42.693,-7.447)
O3': (2.245,-41.151,-3.891)
OP2: (0.875,-44.956,-6.464)
C3': (1.583,-41.831,-4.952)
C1': (-0.582,-41.108,-4.438)
C5': (1.074,-41.448,-7.436)
O6: (-6.558,-40.954,-4.767)
O4': (-0.245,-40.467,-5.645)
C8: (-2.648,-42.463,-3.900)
C2: (-3.972,-38.789,-5.870)
C6: (-5.407,-40.551,-4.967)
C5: (-4.187,-41.175,-4.617)
C4: (-3.001,-40.539,-4.917)
P: (1.147,-44.077,-7.630)
C4': (1.101,-40.869,-6.035)
C2': (0.280,-42.361,-4.391)
O2': (0.458,-42.793,-3.068)
N1: (-5.199,-39.336,-5.604)
N2: (-3.985,-37.615,-6.513)
N3: (-2.816,-39.353,-5.538)
N7: (-3.949,-42.390,-3.982)
N9: (-2.013,-41.366,-4.428)
O5': (0.375,-42.693,-7.447)
O3': (2.245,-41.151,-3.891)
OP1: (-3.195,-49.319,-0.328)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
OP2: (-5.442,-48.498,-1.292)
C3': (-1.973,-45.446,0.579)
C1': (-2.063,-43.303,-0.447)
C5': (-2.040,-46.747,-1.622)
O6: (-6.563,-39.445,-1.386)
O4': (-2.065,-44.310,-1.447)
C8: (-4.566,-43.050,-0.194)
C2: (-3.031,-39.272,-1.759)
C6: (-5.382,-39.816,-1.337)
C5: (-4.865,-41.067,-0.908)
C4: (-3.505,-41.283,-0.964)
P: (-3.948,-48.523,-1.335)
C4': (-1.546,-45.531,-0.873)
C2': (-1.744,-43.973,0.896)
O2': (-0.387,-43.720,1.187)
N1: (-4.365,-38.961,-1.750)
N2: (-2.212,-38.311,-2.190)
N3: (-2.537,-40.439,-1.374)
N7: (-5.520,-42.185,-0.413)
N9: (-3.324,-42.575,-0.522)
O5': (-3.391,-47.034,-1.266)
O3': (-1.130,-46.273,1.352)
Image (generated by PyMOL):