ClaRNA

Doublet info:

Details

Nucleotide types: GG
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A2681:A2499

Extra

PDB:
ATOM 1 O3' A A2680 42.010 162.704 108.214 1.00 38.52 O
ATOM 2 P G A2681 41.358 163.560 109.391 1.00 41.09 P
ATOM 3 OP1 G A2681 40.572 164.641 108.765 1.00 43.66 O
ATOM 4 OP2 G A2681 42.465 163.909 110.314 1.00 38.13 O
ATOM 5 O5' G A2681 40.331 162.563 110.104 1.00 39.65 O
ATOM 6 C5' G A2681 39.168 162.078 109.414 1.00 38.99 C
ATOM 7 C4' G A2681 38.656 160.787 110.029 1.00 40.06 C
ATOM 8 O4' G A2681 39.724 159.814 110.180 1.00 39.62 O
ATOM 9 C3' G A2681 38.177 160.840 111.462 1.00 40.15 C
ATOM 10 O3' G A2681 36.919 161.453 111.606 1.00 41.31 O
ATOM 11 C2' G A2681 38.068 159.358 111.792 1.00 39.23 C
ATOM 12 O2' G A2681 36.914 158.740 111.283 1.00 40.49 O
ATOM 13 C1' G A2681 39.278 158.793 111.058 1.00 39.65 C
ATOM 14 N9 G A2681 40.282 158.514 112.071 1.00 40.84 N
ATOM 15 C8 G A2681 40.421 157.334 112.756 1.00 40.62 C
ATOM 16 N7 G A2681 41.326 157.388 113.685 1.00 40.62 N
ATOM 17 C5 G A2681 41.835 158.672 113.597 1.00 41.55 C
ATOM 18 C6 G A2681 42.834 159.300 114.357 1.00 43.18 C
ATOM 19 O6 G A2681 43.503 158.830 115.277 1.00 46.58 O
ATOM 20 N1 G A2681 43.034 160.610 113.957 1.00 43.68 N
ATOM 21 C2 G A2681 42.358 161.236 112.944 1.00 43.75 C
ATOM 22 N2 G A2681 42.674 162.531 112.736 1.00 44.16 N
ATOM 23 N3 G A2681 41.435 160.649 112.203 1.00 42.23 N
ATOM 24 C4 G A2681 41.218 159.377 112.590 1.00 41.25 C
ATOM 25 P A A2682 36.565 162.194 112.975 1.00 42.83 P
ATOM 26 OP1 A A2682 35.092 162.320 113.032 1.00 43.27 O
ATOM 27 OP2 A A2682 37.427 163.403 113.045 1.00 43.35 O
ATOM 28 O5' A A2682 37.021 161.181 114.103 1.00 40.11 O
TER

ATOM 1 O3' G B2498 41.507 155.043 117.254 1.00 39.67 O
ATOM 2 P G B2499 39.926 155.203 117.466 1.00 41.06 P
ATOM 3 OP1 G B2499 39.800 156.274 118.475 1.00 39.39 O
ATOM 4 OP2 G B2499 39.328 153.863 117.735 1.00 40.90 O
ATOM 5 O5' G B2499 39.417 155.717 116.039 1.00 41.77 O
ATOM 6 C5' G B2499 38.019 155.657 115.660 1.00 41.97 C
ATOM 7 C4' G B2499 37.875 155.717 114.150 1.00 42.06 C
ATOM 8 O4' G B2499 38.654 154.670 113.516 1.00 41.14 O
ATOM 9 C3' G B2499 36.463 155.514 113.632 1.00 41.50 C
ATOM 10 O3' G B2499 35.782 156.764 113.637 1.00 42.07 O
ATOM 11 C2' G B2499 36.701 154.999 112.216 1.00 40.83 C
ATOM 12 O2' G B2499 37.023 156.010 111.294 1.00 42.72 O
ATOM 13 C1' G B2499 37.945 154.137 112.410 1.00 39.16 C
ATOM 14 N9 G B2499 37.579 152.773 112.753 1.00 37.91 N
ATOM 15 C8 G B2499 37.857 152.131 113.931 1.00 38.47 C
ATOM 16 N7 G B2499 37.306 150.952 114.015 1.00 38.05 N
ATOM 17 C5 G B2499 36.647 150.795 112.807 1.00 37.43 C
ATOM 18 C6 G B2499 35.865 149.731 112.335 1.00 36.74 C
ATOM 19 O6 G B2499 35.587 148.686 112.900 1.00 37.90 O
ATOM 20 N1 G B2499 35.382 149.974 111.060 1.00 35.95 N
ATOM 21 C2 G B2499 35.623 151.107 110.330 1.00 36.90 C
ATOM 22 N2 G B2499 35.046 151.178 109.116 1.00 37.20 N
ATOM 23 N3 G B2499 36.368 152.111 110.757 1.00 37.70 N
ATOM 24 C4 G B2499 36.836 151.894 112.001 1.00 37.96 C
ATOM 25 P U B2500 34.214 156.827 113.937 1.00 41.08 P
ATOM 26 OP1 U B2500 33.900 158.271 114.006 1.00 41.08 O
ATOM 27 OP2 U B2500 33.937 155.970 115.100 1.00 41.11 O
ATOM 28 O5' U B2500 33.545 156.160 112.653 1.00 42.43 O
TER

Atoms:
OP1: (40.572,164.641,108.765)
OP2: (42.465,163.909,110.314)
C3': (38.177,160.840,111.462)
C1': (39.278,158.793,111.058)
C5': (39.168,162.078,109.414)
O6: (43.503,158.830,115.277)
O4': (39.724,159.814,110.180)
C8: (40.421,157.334,112.756)
C2: (42.358,161.236,112.944)
C6: (42.834,159.300,114.357)
C5: (41.835,158.672,113.597)
C4: (41.218,159.377,112.590)
P: (41.358,163.560,109.391)
C4': (38.656,160.787,110.029)
C2': (38.068,159.358,111.792)
O2': (36.914,158.740,111.283)
N1: (43.034,160.610,113.957)
N2: (42.674,162.531,112.736)
N3: (41.435,160.649,112.203)
N7: (41.326,157.388,113.685)
N9: (40.282,158.514,112.071)
O5': (40.331,162.563,110.104)
O3': (36.919,161.453,111.606)
OP1: (39.800,156.274,118.475)
OP2: (39.328,153.863,117.735)
C3': (36.463,155.514,113.632)
C1': (37.945,154.137,112.410)
C5': (38.019,155.657,115.660)
O6: (35.587,148.686,112.900)
O4': (38.654,154.670,113.516)
C8: (37.857,152.131,113.931)
C2: (35.623,151.107,110.330)
C6: (35.865,149.731,112.335)
C5: (36.647,150.795,112.807)
C4: (36.836,151.894,112.001)
P: (39.926,155.203,117.466)
C4': (37.875,155.717,114.150)
C2': (36.701,154.999,112.216)
O2': (37.023,156.010,111.294)
N1: (35.382,149.974,111.060)
N2: (35.046,151.178,109.116)
N3: (36.368,152.111,110.757)
N7: (37.306,150.952,114.015)
N9: (37.579,152.773,112.753)
O5': (39.417,155.717,116.039)
O3': (35.782,156.764,113.637)
Image (generated by PyMOL):
PyMOL image
show in jmol