Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0543:0544
Extra
PDB:
ATOM 1 O3' G A 542 -4.274 120.422 81.928 1.00 47.96 O
ATOM 2 P U A 543 -4.413 118.826 81.799 1.00 51.38 P
ATOM 3 OP1 U A 543 -4.074 118.473 80.392 1.00 51.75 O
ATOM 4 OP2 U A 543 -5.734 118.422 82.360 1.00 53.19 O
ATOM 5 O5' U A 543 -3.260 118.268 82.745 1.00 48.36 O
ATOM 6 C5' U A 543 -3.477 118.109 84.149 1.00 49.13 C
ATOM 7 C4' U A 543 -2.728 119.165 84.923 1.00 50.66 C
ATOM 8 O4' U A 543 -3.239 120.479 84.572 1.00 52.75 O
ATOM 9 C3' U A 543 -2.942 119.077 86.421 1.00 52.13 C
ATOM 10 O3' U A 543 -2.093 118.108 87.011 1.00 52.77 O
ATOM 11 C2' U A 543 -2.690 120.505 86.884 1.00 52.79 C
ATOM 12 O2' U A 543 -1.328 120.863 86.996 1.00 54.77 O
ATOM 13 C1' U A 543 -3.322 121.293 85.738 1.00 54.38 C
ATOM 14 N1 U A 543 -4.739 121.609 85.992 1.00 57.01 N
ATOM 15 C2 U A 543 -5.029 122.619 86.900 1.00 57.85 C
ATOM 16 O2 U A 543 -4.172 123.244 87.499 1.00 59.01 O
ATOM 17 N3 U A 543 -6.365 122.866 87.085 1.00 58.86 N
ATOM 18 C4 U A 543 -7.421 122.222 86.480 1.00 59.63 C
ATOM 19 O4 U A 543 -8.573 122.555 86.761 1.00 61.41 O
ATOM 20 C5 U A 543 -7.046 121.191 85.563 1.00 58.91 C
ATOM 21 C6 U A 543 -5.753 120.928 85.353 1.00 57.96 C
ATOM 22 P C A 544 -2.667 117.151 88.165 1.00 53.93 P
ATOM 23 OP1 C A 544 -1.606 116.171 88.513 1.00 54.25 O
ATOM 24 OP2 C A 544 -4.002 116.660 87.740 1.00 53.32 O
ATOM 25 O5' C A 544 -2.849 118.141 89.399 1.00 53.04 O
TER
ATOM 1 O3' U B 543 -2.093 118.108 87.011 1.00 52.77 O
ATOM 2 P C B 544 -2.667 117.151 88.165 1.00 53.93 P
ATOM 3 OP1 C B 544 -1.606 116.171 88.513 1.00 54.25 O
ATOM 4 OP2 C B 544 -4.002 116.660 87.740 1.00 53.32 O
ATOM 5 O5' C B 544 -2.849 118.141 89.399 1.00 53.04 O
ATOM 6 C5' C B 544 -1.715 118.808 89.968 1.00 53.29 C
ATOM 7 C4' C B 544 -2.157 119.905 90.905 1.00 55.50 C
ATOM 8 O4' C B 544 -2.939 120.893 90.181 1.00 56.00 O
ATOM 9 C3' C B 544 -3.067 119.504 92.051 1.00 55.86 C
ATOM 10 O3' C B 544 -2.346 118.911 93.117 1.00 58.35 O
ATOM 11 C2' C B 544 -3.686 120.841 92.431 1.00 55.56 C
ATOM 12 O2' C B 544 -2.805 121.684 93.140 1.00 55.07 O
ATOM 13 C1' C B 544 -3.913 121.453 91.051 1.00 56.60 C
ATOM 14 N1 C B 544 -5.257 121.132 90.535 1.00 57.76 N
ATOM 15 C2 C B 544 -6.338 121.922 90.945 1.00 58.37 C
ATOM 16 O2 C B 544 -6.132 122.865 91.732 1.00 59.20 O
ATOM 17 N3 C B 544 -7.577 121.636 90.482 1.00 58.47 N
ATOM 18 C4 C B 544 -7.759 120.606 89.653 1.00 57.80 C
ATOM 19 N4 C B 544 -8.996 120.354 89.233 1.00 58.26 N
ATOM 20 C5 C B 544 -6.678 119.786 89.222 1.00 57.80 C
ATOM 21 C6 C B 544 -5.457 120.082 89.680 1.00 57.07 C
ATOM 22 P C B 545 -3.096 117.912 94.129 1.00 61.12 P
ATOM 23 OP1 C B 545 -2.036 117.281 94.961 1.00 60.36 O
ATOM 24 OP2 C B 545 -4.042 117.045 93.367 1.00 58.18 O
ATOM 25 O5' C B 545 -3.924 118.897 95.066 1.00 60.70 O
TER
ATOM 2 P U A 543 -4.413 118.826 81.799 1.00 51.38 P
ATOM 3 OP1 U A 543 -4.074 118.473 80.392 1.00 51.75 O
ATOM 4 OP2 U A 543 -5.734 118.422 82.360 1.00 53.19 O
ATOM 5 O5' U A 543 -3.260 118.268 82.745 1.00 48.36 O
ATOM 6 C5' U A 543 -3.477 118.109 84.149 1.00 49.13 C
ATOM 7 C4' U A 543 -2.728 119.165 84.923 1.00 50.66 C
ATOM 8 O4' U A 543 -3.239 120.479 84.572 1.00 52.75 O
ATOM 9 C3' U A 543 -2.942 119.077 86.421 1.00 52.13 C
ATOM 10 O3' U A 543 -2.093 118.108 87.011 1.00 52.77 O
ATOM 11 C2' U A 543 -2.690 120.505 86.884 1.00 52.79 C
ATOM 12 O2' U A 543 -1.328 120.863 86.996 1.00 54.77 O
ATOM 13 C1' U A 543 -3.322 121.293 85.738 1.00 54.38 C
ATOM 14 N1 U A 543 -4.739 121.609 85.992 1.00 57.01 N
ATOM 15 C2 U A 543 -5.029 122.619 86.900 1.00 57.85 C
ATOM 16 O2 U A 543 -4.172 123.244 87.499 1.00 59.01 O
ATOM 17 N3 U A 543 -6.365 122.866 87.085 1.00 58.86 N
ATOM 18 C4 U A 543 -7.421 122.222 86.480 1.00 59.63 C
ATOM 19 O4 U A 543 -8.573 122.555 86.761 1.00 61.41 O
ATOM 20 C5 U A 543 -7.046 121.191 85.563 1.00 58.91 C
ATOM 21 C6 U A 543 -5.753 120.928 85.353 1.00 57.96 C
ATOM 22 P C A 544 -2.667 117.151 88.165 1.00 53.93 P
ATOM 23 OP1 C A 544 -1.606 116.171 88.513 1.00 54.25 O
ATOM 24 OP2 C A 544 -4.002 116.660 87.740 1.00 53.32 O
ATOM 25 O5' C A 544 -2.849 118.141 89.399 1.00 53.04 O
TER
ATOM 1 O3' U B 543 -2.093 118.108 87.011 1.00 52.77 O
ATOM 2 P C B 544 -2.667 117.151 88.165 1.00 53.93 P
ATOM 3 OP1 C B 544 -1.606 116.171 88.513 1.00 54.25 O
ATOM 4 OP2 C B 544 -4.002 116.660 87.740 1.00 53.32 O
ATOM 5 O5' C B 544 -2.849 118.141 89.399 1.00 53.04 O
ATOM 6 C5' C B 544 -1.715 118.808 89.968 1.00 53.29 C
ATOM 7 C4' C B 544 -2.157 119.905 90.905 1.00 55.50 C
ATOM 8 O4' C B 544 -2.939 120.893 90.181 1.00 56.00 O
ATOM 9 C3' C B 544 -3.067 119.504 92.051 1.00 55.86 C
ATOM 10 O3' C B 544 -2.346 118.911 93.117 1.00 58.35 O
ATOM 11 C2' C B 544 -3.686 120.841 92.431 1.00 55.56 C
ATOM 12 O2' C B 544 -2.805 121.684 93.140 1.00 55.07 O
ATOM 13 C1' C B 544 -3.913 121.453 91.051 1.00 56.60 C
ATOM 14 N1 C B 544 -5.257 121.132 90.535 1.00 57.76 N
ATOM 15 C2 C B 544 -6.338 121.922 90.945 1.00 58.37 C
ATOM 16 O2 C B 544 -6.132 122.865 91.732 1.00 59.20 O
ATOM 17 N3 C B 544 -7.577 121.636 90.482 1.00 58.47 N
ATOM 18 C4 C B 544 -7.759 120.606 89.653 1.00 57.80 C
ATOM 19 N4 C B 544 -8.996 120.354 89.233 1.00 58.26 N
ATOM 20 C5 C B 544 -6.678 119.786 89.222 1.00 57.80 C
ATOM 21 C6 C B 544 -5.457 120.082 89.680 1.00 57.07 C
ATOM 22 P C B 545 -3.096 117.912 94.129 1.00 61.12 P
ATOM 23 OP1 C B 545 -2.036 117.281 94.961 1.00 60.36 O
ATOM 24 OP2 C B 545 -4.042 117.045 93.367 1.00 58.18 O
ATOM 25 O5' C B 545 -3.924 118.897 95.066 1.00 60.70 O
TER
Atoms:
C4: (-7.421,122.222,86.480)
N3: (-6.365,122.866,87.085)
OP1: (-4.074,118.473,80.392)
OP2: (-5.734,118.422,82.360)
C2: (-5.029,122.619,86.900)
C1': (-3.322,121.293,85.738)
C3': (-2.942,119.077,86.421)
O5': (-3.260,118.268,82.745)
O4': (-3.239,120.479,84.572)
C5': (-3.477,118.109,84.149)
P: (-4.413,118.826,81.799)
C4': (-2.728,119.165,84.923)
C2': (-2.690,120.505,86.884)
O2': (-1.328,120.863,86.996)
N1: (-4.739,121.609,85.992)
O4: (-8.573,122.555,86.761)
O2: (-4.172,123.244,87.499)
C6: (-5.753,120.928,85.353)
C5: (-7.046,121.191,85.563)
O3': (-2.093,118.108,87.011)
N3: (-6.365,122.866,87.085)
OP1: (-4.074,118.473,80.392)
OP2: (-5.734,118.422,82.360)
C2: (-5.029,122.619,86.900)
C1': (-3.322,121.293,85.738)
C3': (-2.942,119.077,86.421)
O5': (-3.260,118.268,82.745)
O4': (-3.239,120.479,84.572)
C5': (-3.477,118.109,84.149)
P: (-4.413,118.826,81.799)
C4': (-2.728,119.165,84.923)
C2': (-2.690,120.505,86.884)
O2': (-1.328,120.863,86.996)
N1: (-4.739,121.609,85.992)
O4: (-8.573,122.555,86.761)
O2: (-4.172,123.244,87.499)
C6: (-5.753,120.928,85.353)
C5: (-7.046,121.191,85.563)
O3': (-2.093,118.108,87.011)
C2: (-6.338,121.922,90.945)
OP1: (-1.606,116.171,88.513)
OP2: (-4.002,116.660,87.740)
C4: (-7.759,120.606,89.653)
O5': (-2.849,118.141,89.399)
C3': (-3.067,119.504,92.051)
C1': (-3.913,121.453,91.051)
O4': (-2.939,120.893,90.181)
C5': (-1.715,118.808,89.968)
P: (-2.667,117.151,88.165)
O2: (-6.132,122.865,91.732)
C4': (-2.157,119.905,90.905)
C2': (-3.686,120.841,92.431)
O2': (-2.805,121.684,93.140)
N1: (-5.257,121.132,90.535)
N3: (-7.577,121.636,90.482)
N4: (-8.996,120.354,89.233)
C6: (-5.457,120.082,89.680)
C5: (-6.678,119.786,89.222)
O3': (-2.346,118.911,93.117)
OP1: (-1.606,116.171,88.513)
OP2: (-4.002,116.660,87.740)
C4: (-7.759,120.606,89.653)
O5': (-2.849,118.141,89.399)
C3': (-3.067,119.504,92.051)
C1': (-3.913,121.453,91.051)
O4': (-2.939,120.893,90.181)
C5': (-1.715,118.808,89.968)
P: (-2.667,117.151,88.165)
O2: (-6.132,122.865,91.732)
C4': (-2.157,119.905,90.905)
C2': (-3.686,120.841,92.431)
O2': (-2.805,121.684,93.140)
N1: (-5.257,121.132,90.535)
N3: (-7.577,121.636,90.482)
N4: (-8.996,120.354,89.233)
C6: (-5.457,120.082,89.680)
C5: (-6.678,119.786,89.222)
O3': (-2.346,118.911,93.117)
Image (generated by PyMOL):