Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GCV:B57:B58
Extra
PDB:
ATOM 1 O3' U A 56 4.708 3.504 0.802 1.00 40.83 O
ATOM 2 P U A 57 4.787 3.008 2.319 1.00 45.18 P
ATOM 3 OP1 U A 57 4.725 4.214 3.181 1.00 44.47 O
ATOM 4 OP2 U A 57 5.909 2.048 2.462 1.00 41.04 O
ATOM 5 O5' U A 57 3.422 2.214 2.498 1.00 45.53 O
ATOM 6 C5' U A 57 2.985 1.792 3.778 1.00 46.09 C
ATOM 7 C4' U A 57 2.555 0.349 3.724 1.00 46.36 C
ATOM 8 O4' U A 57 1.465 0.205 2.778 1.00 44.48 O
ATOM 9 C3' U A 57 3.586 -0.633 3.192 1.00 46.11 C
ATOM 10 O3' U A 57 4.518 -1.002 4.197 1.00 47.20 O
ATOM 11 C2' U A 57 2.715 -1.820 2.806 1.00 45.28 C
ATOM 12 O2' U A 57 2.371 -2.619 3.918 1.00 45.08 O
ATOM 13 C1' U A 57 1.467 -1.117 2.264 1.00 44.02 C
ATOM 14 N1 U A 57 1.451 -1.060 0.799 1.00 39.75 N
ATOM 15 C2 U A 57 1.197 -2.237 0.134 1.00 40.04 C
ATOM 16 O2 U A 57 0.998 -3.288 0.715 1.00 42.71 O
ATOM 17 N3 U A 57 1.188 -2.142 -1.234 1.00 39.51 N
ATOM 18 C4 U A 57 1.405 -1.010 -1.984 1.00 36.83 C
ATOM 19 O4 U A 57 1.349 -1.081 -3.208 1.00 41.47 O
ATOM 20 C5 U A 57 1.667 0.171 -1.220 1.00 39.51 C
ATOM 21 C6 U A 57 1.679 0.106 0.115 1.00 38.74 C
ATOM 22 P C A 58 6.013 -1.409 3.778 1.00 48.45 P
ATOM 23 OP1 C A 58 6.834 -1.469 5.017 1.00 48.62 O
ATOM 24 OP2 C A 58 6.416 -0.514 2.662 1.00 45.84 O
ATOM 25 O5' C A 58 5.871 -2.883 3.193 1.00 44.60 O
TER
ATOM 1 O3' U B 57 4.518 -1.002 4.197 1.00 47.20 O
ATOM 2 P C B 58 6.013 -1.409 3.778 1.00 48.45 P
ATOM 3 OP1 C B 58 6.834 -1.469 5.017 1.00 48.62 O
ATOM 4 OP2 C B 58 6.416 -0.514 2.662 1.00 45.84 O
ATOM 5 O5' C B 58 5.871 -2.883 3.193 1.00 44.60 O
ATOM 6 C5' C B 58 5.441 -3.953 4.018 1.00 43.05 C
ATOM 7 C4' C B 58 5.207 -5.182 3.179 1.00 43.31 C
ATOM 8 O4' C B 58 4.119 -4.931 2.252 1.00 41.56 O
ATOM 9 C3' C B 58 6.364 -5.568 2.275 1.00 43.35 C
ATOM 10 O3' C B 58 7.330 -6.328 2.984 1.00 45.85 O
ATOM 11 C2' C B 58 5.669 -6.400 1.207 1.00 41.76 C
ATOM 12 O2' C B 58 5.403 -7.721 1.632 1.00 41.30 O
ATOM 13 C1' C B 58 4.352 -5.641 1.046 1.00 40.41 C
ATOM 14 N1 C B 58 4.366 -4.683 -0.069 1.00 36.98 N
ATOM 15 C2 C B 58 4.256 -5.176 -1.367 1.00 37.40 C
ATOM 16 O2 C B 58 4.190 -6.403 -1.533 1.00 40.60 O
ATOM 17 N3 C B 58 4.227 -4.311 -2.408 1.00 33.08 N
ATOM 18 C4 C B 58 4.315 -2.999 -2.186 1.00 35.58 C
ATOM 19 N4 C B 58 4.273 -2.180 -3.244 1.00 31.29 N
ATOM 20 C5 C B 58 4.449 -2.465 -0.867 1.00 35.10 C
ATOM 21 C6 C B 58 4.471 -3.337 0.152 1.00 36.73 C
ATOM 22 P C B 59 8.843 -6.389 2.444 1.00 47.12 P
ATOM 23 OP1 C B 59 9.612 -7.218 3.406 1.00 46.77 O
ATOM 24 OP2 C B 59 9.285 -5.002 2.147 1.00 44.12 O
ATOM 25 O5' C B 59 8.727 -7.181 1.067 1.00 44.31 O
TER
ATOM 2 P U A 57 4.787 3.008 2.319 1.00 45.18 P
ATOM 3 OP1 U A 57 4.725 4.214 3.181 1.00 44.47 O
ATOM 4 OP2 U A 57 5.909 2.048 2.462 1.00 41.04 O
ATOM 5 O5' U A 57 3.422 2.214 2.498 1.00 45.53 O
ATOM 6 C5' U A 57 2.985 1.792 3.778 1.00 46.09 C
ATOM 7 C4' U A 57 2.555 0.349 3.724 1.00 46.36 C
ATOM 8 O4' U A 57 1.465 0.205 2.778 1.00 44.48 O
ATOM 9 C3' U A 57 3.586 -0.633 3.192 1.00 46.11 C
ATOM 10 O3' U A 57 4.518 -1.002 4.197 1.00 47.20 O
ATOM 11 C2' U A 57 2.715 -1.820 2.806 1.00 45.28 C
ATOM 12 O2' U A 57 2.371 -2.619 3.918 1.00 45.08 O
ATOM 13 C1' U A 57 1.467 -1.117 2.264 1.00 44.02 C
ATOM 14 N1 U A 57 1.451 -1.060 0.799 1.00 39.75 N
ATOM 15 C2 U A 57 1.197 -2.237 0.134 1.00 40.04 C
ATOM 16 O2 U A 57 0.998 -3.288 0.715 1.00 42.71 O
ATOM 17 N3 U A 57 1.188 -2.142 -1.234 1.00 39.51 N
ATOM 18 C4 U A 57 1.405 -1.010 -1.984 1.00 36.83 C
ATOM 19 O4 U A 57 1.349 -1.081 -3.208 1.00 41.47 O
ATOM 20 C5 U A 57 1.667 0.171 -1.220 1.00 39.51 C
ATOM 21 C6 U A 57 1.679 0.106 0.115 1.00 38.74 C
ATOM 22 P C A 58 6.013 -1.409 3.778 1.00 48.45 P
ATOM 23 OP1 C A 58 6.834 -1.469 5.017 1.00 48.62 O
ATOM 24 OP2 C A 58 6.416 -0.514 2.662 1.00 45.84 O
ATOM 25 O5' C A 58 5.871 -2.883 3.193 1.00 44.60 O
TER
ATOM 1 O3' U B 57 4.518 -1.002 4.197 1.00 47.20 O
ATOM 2 P C B 58 6.013 -1.409 3.778 1.00 48.45 P
ATOM 3 OP1 C B 58 6.834 -1.469 5.017 1.00 48.62 O
ATOM 4 OP2 C B 58 6.416 -0.514 2.662 1.00 45.84 O
ATOM 5 O5' C B 58 5.871 -2.883 3.193 1.00 44.60 O
ATOM 6 C5' C B 58 5.441 -3.953 4.018 1.00 43.05 C
ATOM 7 C4' C B 58 5.207 -5.182 3.179 1.00 43.31 C
ATOM 8 O4' C B 58 4.119 -4.931 2.252 1.00 41.56 O
ATOM 9 C3' C B 58 6.364 -5.568 2.275 1.00 43.35 C
ATOM 10 O3' C B 58 7.330 -6.328 2.984 1.00 45.85 O
ATOM 11 C2' C B 58 5.669 -6.400 1.207 1.00 41.76 C
ATOM 12 O2' C B 58 5.403 -7.721 1.632 1.00 41.30 O
ATOM 13 C1' C B 58 4.352 -5.641 1.046 1.00 40.41 C
ATOM 14 N1 C B 58 4.366 -4.683 -0.069 1.00 36.98 N
ATOM 15 C2 C B 58 4.256 -5.176 -1.367 1.00 37.40 C
ATOM 16 O2 C B 58 4.190 -6.403 -1.533 1.00 40.60 O
ATOM 17 N3 C B 58 4.227 -4.311 -2.408 1.00 33.08 N
ATOM 18 C4 C B 58 4.315 -2.999 -2.186 1.00 35.58 C
ATOM 19 N4 C B 58 4.273 -2.180 -3.244 1.00 31.29 N
ATOM 20 C5 C B 58 4.449 -2.465 -0.867 1.00 35.10 C
ATOM 21 C6 C B 58 4.471 -3.337 0.152 1.00 36.73 C
ATOM 22 P C B 59 8.843 -6.389 2.444 1.00 47.12 P
ATOM 23 OP1 C B 59 9.612 -7.218 3.406 1.00 46.77 O
ATOM 24 OP2 C B 59 9.285 -5.002 2.147 1.00 44.12 O
ATOM 25 O5' C B 59 8.727 -7.181 1.067 1.00 44.31 O
TER
Atoms:
C4: (1.405,-1.010,-1.984)
N3: (1.188,-2.142,-1.234)
OP1: (4.725,4.214,3.181)
OP2: (5.909,2.048,2.462)
C2: (1.197,-2.237,0.134)
C1': (1.467,-1.117,2.264)
C3': (3.586,-0.633,3.192)
O5': (3.422,2.214,2.498)
O4': (1.465,0.205,2.778)
C5': (2.985,1.792,3.778)
P: (4.787,3.008,2.319)
C4': (2.555,0.349,3.724)
C2': (2.715,-1.820,2.806)
O2': (2.371,-2.619,3.918)
N1: (1.451,-1.060,0.799)
O4: (1.349,-1.081,-3.208)
O2: (0.998,-3.288,0.715)
C6: (1.679,0.106,0.115)
C5: (1.667,0.171,-1.220)
O3': (4.518,-1.002,4.197)
N3: (1.188,-2.142,-1.234)
OP1: (4.725,4.214,3.181)
OP2: (5.909,2.048,2.462)
C2: (1.197,-2.237,0.134)
C1': (1.467,-1.117,2.264)
C3': (3.586,-0.633,3.192)
O5': (3.422,2.214,2.498)
O4': (1.465,0.205,2.778)
C5': (2.985,1.792,3.778)
P: (4.787,3.008,2.319)
C4': (2.555,0.349,3.724)
C2': (2.715,-1.820,2.806)
O2': (2.371,-2.619,3.918)
N1: (1.451,-1.060,0.799)
O4: (1.349,-1.081,-3.208)
O2: (0.998,-3.288,0.715)
C6: (1.679,0.106,0.115)
C5: (1.667,0.171,-1.220)
O3': (4.518,-1.002,4.197)
C2: (4.256,-5.176,-1.367)
OP1: (6.834,-1.469,5.017)
OP2: (6.416,-0.514,2.662)
C4: (4.315,-2.999,-2.186)
O5': (5.871,-2.883,3.193)
C3': (6.364,-5.568,2.275)
C1': (4.352,-5.641,1.046)
O4': (4.119,-4.931,2.252)
C5': (5.441,-3.953,4.018)
P: (6.013,-1.409,3.778)
O2: (4.190,-6.403,-1.533)
C4': (5.207,-5.182,3.179)
C2': (5.669,-6.400,1.207)
O2': (5.403,-7.721,1.632)
N1: (4.366,-4.683,-0.069)
N3: (4.227,-4.311,-2.408)
N4: (4.273,-2.180,-3.244)
C6: (4.471,-3.337,0.152)
C5: (4.449,-2.465,-0.867)
O3': (7.330,-6.328,2.984)
OP1: (6.834,-1.469,5.017)
OP2: (6.416,-0.514,2.662)
C4: (4.315,-2.999,-2.186)
O5': (5.871,-2.883,3.193)
C3': (6.364,-5.568,2.275)
C1': (4.352,-5.641,1.046)
O4': (4.119,-4.931,2.252)
C5': (5.441,-3.953,4.018)
P: (6.013,-1.409,3.778)
O2: (4.190,-6.403,-1.533)
C4': (5.207,-5.182,3.179)
C2': (5.669,-6.400,1.207)
O2': (5.403,-7.721,1.632)
N1: (4.366,-4.683,-0.069)
N3: (4.227,-4.311,-2.408)
N4: (4.273,-2.180,-3.244)
C6: (4.471,-3.337,0.152)
C5: (4.449,-2.465,-0.867)
O3': (7.330,-6.328,2.984)
Image (generated by PyMOL):