Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YVP:E5:E6
Extra
PDB:
ATOM 1 O3' G A 4 20.223 70.491 -8.613 1.00 38.54 O
ATOM 2 P U A 5 20.378 68.898 -8.729 1.00 42.88 P
ATOM 3 OP1 U A 5 19.537 68.280 -7.676 1.00 42.95 O
ATOM 4 OP2 U A 5 21.833 68.593 -8.784 1.00 41.37 O
ATOM 5 O5' U A 5 19.760 68.539 -10.151 1.00 42.12 O
ATOM 6 C5' U A 5 18.353 68.430 -10.333 1.00 40.67 C
ATOM 7 C4' U A 5 18.048 67.872 -11.703 1.00 39.80 C
ATOM 8 O4' U A 5 18.465 68.825 -12.720 1.00 38.34 O
ATOM 9 C3' U A 5 18.802 66.609 -12.084 1.00 39.10 C
ATOM 10 O3' U A 5 18.224 65.434 -11.523 1.00 40.68 O
ATOM 11 C2' U A 5 18.695 66.638 -13.602 1.00 39.71 C
ATOM 12 O2' U A 5 17.432 66.237 -14.085 1.00 41.90 O
ATOM 13 C1' U A 5 18.891 68.127 -13.881 1.00 38.69 C
ATOM 14 N1 U A 5 20.307 68.432 -14.123 1.00 38.58 N
ATOM 15 C2 U A 5 20.804 68.178 -15.388 1.00 39.12 C
ATOM 16 O2 U A 5 20.114 67.737 -16.291 1.00 40.44 O
ATOM 17 N3 U A 5 22.140 68.452 -15.553 1.00 36.45 N
ATOM 18 C4 U A 5 23.008 68.939 -14.598 1.00 36.62 C
ATOM 19 O4 U A 5 24.187 69.127 -14.893 1.00 35.88 O
ATOM 20 C5 U A 5 22.414 69.181 -13.317 1.00 37.56 C
ATOM 21 C6 U A 5 21.117 68.931 -13.129 1.00 38.92 C
ATOM 22 P C A 6 19.153 64.150 -11.239 1.00 40.21 P
ATOM 23 OP1 C A 6 18.316 63.113 -10.585 1.00 41.34 O
ATOM 24 OP2 C A 6 20.396 64.614 -10.574 1.00 42.37 O
ATOM 25 O5' C A 6 19.542 63.630 -12.691 1.00 40.22 O
TER
ATOM 1 O3' U B 5 18.224 65.434 -11.523 1.00 40.68 O
ATOM 2 P C B 6 19.153 64.150 -11.239 1.00 40.21 P
ATOM 3 OP1 C B 6 18.316 63.113 -10.585 1.00 41.34 O
ATOM 4 OP2 C B 6 20.396 64.614 -10.574 1.00 42.37 O
ATOM 5 O5' C B 6 19.542 63.630 -12.691 1.00 40.22 O
ATOM 6 C5' C B 6 18.538 63.177 -13.592 1.00 40.60 C
ATOM 7 C4' C B 6 19.143 62.869 -14.941 1.00 40.02 C
ATOM 8 O4' C B 6 19.672 64.087 -15.529 1.00 40.23 O
ATOM 9 C3' C B 6 20.343 61.937 -14.943 1.00 39.51 C
ATOM 10 O3' C B 6 19.959 60.572 -14.856 1.00 40.97 O
ATOM 11 C2' C B 6 20.962 62.253 -16.292 1.00 38.18 C
ATOM 12 O2' C B 6 20.258 61.649 -17.355 1.00 39.16 O
ATOM 13 C1' C B 6 20.787 63.770 -16.348 1.00 38.21 C
ATOM 14 N1 C B 6 21.977 64.448 -15.815 1.00 37.38 N
ATOM 15 C2 C B 6 23.077 64.583 -16.649 1.00 35.12 C
ATOM 16 O2 C B 6 22.994 64.161 -17.808 1.00 36.39 O
ATOM 17 N3 C B 6 24.200 65.166 -16.180 1.00 36.68 N
ATOM 18 C4 C B 6 24.242 65.618 -14.925 1.00 35.97 C
ATOM 19 N4 C B 6 25.377 66.186 -14.505 1.00 36.96 N
ATOM 20 C5 C B 6 23.124 65.504 -14.048 1.00 34.90 C
ATOM 21 C6 C B 6 22.019 64.920 -14.532 1.00 35.70 C
ATOM 22 P C B 7 20.976 59.496 -14.225 1.00 41.03 P
ATOM 23 OP1 C B 7 20.285 58.178 -14.264 1.00 41.53 O
ATOM 24 OP2 C B 7 21.495 60.019 -12.935 1.00 37.08 O
ATOM 25 O5' C B 7 22.176 59.439 -15.271 1.00 38.71 O
TER
ATOM 2 P U A 5 20.378 68.898 -8.729 1.00 42.88 P
ATOM 3 OP1 U A 5 19.537 68.280 -7.676 1.00 42.95 O
ATOM 4 OP2 U A 5 21.833 68.593 -8.784 1.00 41.37 O
ATOM 5 O5' U A 5 19.760 68.539 -10.151 1.00 42.12 O
ATOM 6 C5' U A 5 18.353 68.430 -10.333 1.00 40.67 C
ATOM 7 C4' U A 5 18.048 67.872 -11.703 1.00 39.80 C
ATOM 8 O4' U A 5 18.465 68.825 -12.720 1.00 38.34 O
ATOM 9 C3' U A 5 18.802 66.609 -12.084 1.00 39.10 C
ATOM 10 O3' U A 5 18.224 65.434 -11.523 1.00 40.68 O
ATOM 11 C2' U A 5 18.695 66.638 -13.602 1.00 39.71 C
ATOM 12 O2' U A 5 17.432 66.237 -14.085 1.00 41.90 O
ATOM 13 C1' U A 5 18.891 68.127 -13.881 1.00 38.69 C
ATOM 14 N1 U A 5 20.307 68.432 -14.123 1.00 38.58 N
ATOM 15 C2 U A 5 20.804 68.178 -15.388 1.00 39.12 C
ATOM 16 O2 U A 5 20.114 67.737 -16.291 1.00 40.44 O
ATOM 17 N3 U A 5 22.140 68.452 -15.553 1.00 36.45 N
ATOM 18 C4 U A 5 23.008 68.939 -14.598 1.00 36.62 C
ATOM 19 O4 U A 5 24.187 69.127 -14.893 1.00 35.88 O
ATOM 20 C5 U A 5 22.414 69.181 -13.317 1.00 37.56 C
ATOM 21 C6 U A 5 21.117 68.931 -13.129 1.00 38.92 C
ATOM 22 P C A 6 19.153 64.150 -11.239 1.00 40.21 P
ATOM 23 OP1 C A 6 18.316 63.113 -10.585 1.00 41.34 O
ATOM 24 OP2 C A 6 20.396 64.614 -10.574 1.00 42.37 O
ATOM 25 O5' C A 6 19.542 63.630 -12.691 1.00 40.22 O
TER
ATOM 1 O3' U B 5 18.224 65.434 -11.523 1.00 40.68 O
ATOM 2 P C B 6 19.153 64.150 -11.239 1.00 40.21 P
ATOM 3 OP1 C B 6 18.316 63.113 -10.585 1.00 41.34 O
ATOM 4 OP2 C B 6 20.396 64.614 -10.574 1.00 42.37 O
ATOM 5 O5' C B 6 19.542 63.630 -12.691 1.00 40.22 O
ATOM 6 C5' C B 6 18.538 63.177 -13.592 1.00 40.60 C
ATOM 7 C4' C B 6 19.143 62.869 -14.941 1.00 40.02 C
ATOM 8 O4' C B 6 19.672 64.087 -15.529 1.00 40.23 O
ATOM 9 C3' C B 6 20.343 61.937 -14.943 1.00 39.51 C
ATOM 10 O3' C B 6 19.959 60.572 -14.856 1.00 40.97 O
ATOM 11 C2' C B 6 20.962 62.253 -16.292 1.00 38.18 C
ATOM 12 O2' C B 6 20.258 61.649 -17.355 1.00 39.16 O
ATOM 13 C1' C B 6 20.787 63.770 -16.348 1.00 38.21 C
ATOM 14 N1 C B 6 21.977 64.448 -15.815 1.00 37.38 N
ATOM 15 C2 C B 6 23.077 64.583 -16.649 1.00 35.12 C
ATOM 16 O2 C B 6 22.994 64.161 -17.808 1.00 36.39 O
ATOM 17 N3 C B 6 24.200 65.166 -16.180 1.00 36.68 N
ATOM 18 C4 C B 6 24.242 65.618 -14.925 1.00 35.97 C
ATOM 19 N4 C B 6 25.377 66.186 -14.505 1.00 36.96 N
ATOM 20 C5 C B 6 23.124 65.504 -14.048 1.00 34.90 C
ATOM 21 C6 C B 6 22.019 64.920 -14.532 1.00 35.70 C
ATOM 22 P C B 7 20.976 59.496 -14.225 1.00 41.03 P
ATOM 23 OP1 C B 7 20.285 58.178 -14.264 1.00 41.53 O
ATOM 24 OP2 C B 7 21.495 60.019 -12.935 1.00 37.08 O
ATOM 25 O5' C B 7 22.176 59.439 -15.271 1.00 38.71 O
TER
Atoms:
C4: (23.008,68.939,-14.598)
N3: (22.140,68.452,-15.553)
OP1: (19.537,68.280,-7.676)
OP2: (21.833,68.593,-8.784)
C2: (20.804,68.178,-15.388)
C1': (18.891,68.127,-13.881)
C3': (18.802,66.609,-12.084)
O5': (19.760,68.539,-10.151)
O4': (18.465,68.825,-12.720)
C5': (18.353,68.430,-10.333)
P: (20.378,68.898,-8.729)
C4': (18.048,67.872,-11.703)
C2': (18.695,66.638,-13.602)
O2': (17.432,66.237,-14.085)
N1: (20.307,68.432,-14.123)
O4: (24.187,69.127,-14.893)
O2: (20.114,67.737,-16.291)
C6: (21.117,68.931,-13.129)
C5: (22.414,69.181,-13.317)
O3': (18.224,65.434,-11.523)
N3: (22.140,68.452,-15.553)
OP1: (19.537,68.280,-7.676)
OP2: (21.833,68.593,-8.784)
C2: (20.804,68.178,-15.388)
C1': (18.891,68.127,-13.881)
C3': (18.802,66.609,-12.084)
O5': (19.760,68.539,-10.151)
O4': (18.465,68.825,-12.720)
C5': (18.353,68.430,-10.333)
P: (20.378,68.898,-8.729)
C4': (18.048,67.872,-11.703)
C2': (18.695,66.638,-13.602)
O2': (17.432,66.237,-14.085)
N1: (20.307,68.432,-14.123)
O4: (24.187,69.127,-14.893)
O2: (20.114,67.737,-16.291)
C6: (21.117,68.931,-13.129)
C5: (22.414,69.181,-13.317)
O3': (18.224,65.434,-11.523)
C2: (23.077,64.583,-16.649)
OP1: (18.316,63.113,-10.585)
OP2: (20.396,64.614,-10.574)
C4: (24.242,65.618,-14.925)
O5': (19.542,63.630,-12.691)
C3': (20.343,61.937,-14.943)
C1': (20.787,63.770,-16.348)
O4': (19.672,64.087,-15.529)
C5': (18.538,63.177,-13.592)
P: (19.153,64.150,-11.239)
O2: (22.994,64.161,-17.808)
C4': (19.143,62.869,-14.941)
C2': (20.962,62.253,-16.292)
O2': (20.258,61.649,-17.355)
N1: (21.977,64.448,-15.815)
N3: (24.200,65.166,-16.180)
N4: (25.377,66.186,-14.505)
C6: (22.019,64.920,-14.532)
C5: (23.124,65.504,-14.048)
O3': (19.959,60.572,-14.856)
OP1: (18.316,63.113,-10.585)
OP2: (20.396,64.614,-10.574)
C4: (24.242,65.618,-14.925)
O5': (19.542,63.630,-12.691)
C3': (20.343,61.937,-14.943)
C1': (20.787,63.770,-16.348)
O4': (19.672,64.087,-15.529)
C5': (18.538,63.177,-13.592)
P: (19.153,64.150,-11.239)
O2: (22.994,64.161,-17.808)
C4': (19.143,62.869,-14.941)
C2': (20.962,62.253,-16.292)
O2': (20.258,61.649,-17.355)
N1: (21.977,64.448,-15.815)
N3: (24.200,65.166,-16.180)
N4: (25.377,66.186,-14.505)
C6: (22.019,64.920,-14.532)
C5: (23.124,65.504,-14.048)
O3': (19.959,60.572,-14.856)
Image (generated by PyMOL):