Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1VBZ:B12:B13
Extra
PDB:
ATOM 1 O3' G A 11 31.961 106.744 77.816 1.00 95.47 O
ATOM 2 P U A 12 31.963 105.374 78.659 1.00 97.54 P
ATOM 3 OP1 U A 12 33.334 104.793 78.620 1.00 97.34 O
ATOM 4 OP2 U A 12 30.805 104.563 78.196 1.00 97.14 O
ATOM 5 O5' U A 12 31.637 105.850 80.145 1.00 98.13 O
ATOM 6 C5' U A 12 32.395 106.891 80.765 1.00 99.18 C
ATOM 7 C4' U A 12 31.857 107.177 82.147 1.00 99.83 C
ATOM 8 O4' U A 12 30.574 107.845 82.070 1.00 99.00 O
ATOM 9 C3' U A 12 31.602 105.937 82.986 1.00100.57 C
ATOM 10 O3' U A 12 32.787 105.524 83.649 1.00103.16 O
ATOM 11 C2' U A 12 30.532 106.393 83.970 1.00 99.55 C
ATOM 12 O2' U A 12 31.075 107.002 85.124 1.00 98.00 O
ATOM 13 C1' U A 12 29.750 107.409 83.135 1.00 98.54 C
ATOM 14 N1 U A 12 28.509 106.874 82.565 1.00 97.15 N
ATOM 15 C2 U A 12 27.389 106.939 83.352 1.00 96.36 C
ATOM 16 O2 U A 12 27.422 107.383 84.491 1.00 96.34 O
ATOM 17 N3 U A 12 26.241 106.466 82.761 1.00 96.39 N
ATOM 18 C4 U A 12 26.118 105.932 81.479 1.00 97.04 C
ATOM 19 O4 U A 12 25.021 105.522 81.082 1.00 96.44 O
ATOM 20 C5 U A 12 27.340 105.888 80.737 1.00 96.71 C
ATOM 21 C6 U A 12 28.464 106.345 81.291 1.00 96.86 C
ATOM 22 P C A 13 32.837 104.079 84.344 1.00105.16 P
ATOM 23 OP1 C A 13 33.708 104.169 85.546 1.00106.24 O
ATOM 24 OP2 C A 13 33.130 103.068 83.292 1.00105.51 O
ATOM 25 O5' C A 13 31.342 103.868 84.840 1.00104.62 O
TER
ATOM 1 O3' U B 12 32.787 105.524 83.649 1.00103.16 O
ATOM 2 P C B 13 32.837 104.079 84.344 1.00105.16 P
ATOM 3 OP1 C B 13 33.708 104.169 85.546 1.00106.24 O
ATOM 4 OP2 C B 13 33.130 103.068 83.292 1.00105.51 O
ATOM 5 O5' C B 13 31.342 103.868 84.840 1.00104.62 O
ATOM 6 C5' C B 13 31.049 103.055 85.960 1.00103.25 C
ATOM 7 C4' C B 13 30.169 103.815 86.915 1.00102.22 C
ATOM 8 O4' C B 13 29.390 104.790 86.179 1.00100.90 O
ATOM 9 C3' C B 13 29.157 102.944 87.629 1.00102.00 C
ATOM 10 O3' C B 13 29.722 102.355 88.791 1.00102.32 O
ATOM 11 C2' C B 13 28.017 103.915 87.908 1.00101.21 C
ATOM 12 O2' C B 13 28.239 104.693 89.065 1.00100.64 O
ATOM 13 C1' C B 13 28.064 104.811 86.667 1.00100.58 C
ATOM 14 N1 C B 13 27.212 104.324 85.577 1.00100.33 N
ATOM 15 C2 C B 13 25.819 104.281 85.744 1.00100.69 C
ATOM 16 O2 C B 13 25.319 104.645 86.798 1.00101.19 O
ATOM 17 N3 C B 13 25.055 103.841 84.746 1.00100.65 N
ATOM 18 C4 C B 13 25.599 103.440 83.615 1.00100.72 C
ATOM 19 N4 C B 13 24.772 103.011 82.675 1.00101.45 N
ATOM 20 C5 C B 13 27.011 103.464 83.401 1.00100.47 C
ATOM 21 C6 C B 13 27.774 103.912 84.402 1.00100.07 C
ATOM 22 P C B 14 29.337 100.842 89.172 1.00102.46 P
ATOM 23 OP1 C B 14 30.045 100.465 90.419 1.00102.86 O
ATOM 24 OP2 C B 14 29.497 100.005 87.954 1.00102.47 O
ATOM 25 O5' C B 14 27.790 100.938 89.517 1.00101.69 O
TER
ATOM 2 P U A 12 31.963 105.374 78.659 1.00 97.54 P
ATOM 3 OP1 U A 12 33.334 104.793 78.620 1.00 97.34 O
ATOM 4 OP2 U A 12 30.805 104.563 78.196 1.00 97.14 O
ATOM 5 O5' U A 12 31.637 105.850 80.145 1.00 98.13 O
ATOM 6 C5' U A 12 32.395 106.891 80.765 1.00 99.18 C
ATOM 7 C4' U A 12 31.857 107.177 82.147 1.00 99.83 C
ATOM 8 O4' U A 12 30.574 107.845 82.070 1.00 99.00 O
ATOM 9 C3' U A 12 31.602 105.937 82.986 1.00100.57 C
ATOM 10 O3' U A 12 32.787 105.524 83.649 1.00103.16 O
ATOM 11 C2' U A 12 30.532 106.393 83.970 1.00 99.55 C
ATOM 12 O2' U A 12 31.075 107.002 85.124 1.00 98.00 O
ATOM 13 C1' U A 12 29.750 107.409 83.135 1.00 98.54 C
ATOM 14 N1 U A 12 28.509 106.874 82.565 1.00 97.15 N
ATOM 15 C2 U A 12 27.389 106.939 83.352 1.00 96.36 C
ATOM 16 O2 U A 12 27.422 107.383 84.491 1.00 96.34 O
ATOM 17 N3 U A 12 26.241 106.466 82.761 1.00 96.39 N
ATOM 18 C4 U A 12 26.118 105.932 81.479 1.00 97.04 C
ATOM 19 O4 U A 12 25.021 105.522 81.082 1.00 96.44 O
ATOM 20 C5 U A 12 27.340 105.888 80.737 1.00 96.71 C
ATOM 21 C6 U A 12 28.464 106.345 81.291 1.00 96.86 C
ATOM 22 P C A 13 32.837 104.079 84.344 1.00105.16 P
ATOM 23 OP1 C A 13 33.708 104.169 85.546 1.00106.24 O
ATOM 24 OP2 C A 13 33.130 103.068 83.292 1.00105.51 O
ATOM 25 O5' C A 13 31.342 103.868 84.840 1.00104.62 O
TER
ATOM 1 O3' U B 12 32.787 105.524 83.649 1.00103.16 O
ATOM 2 P C B 13 32.837 104.079 84.344 1.00105.16 P
ATOM 3 OP1 C B 13 33.708 104.169 85.546 1.00106.24 O
ATOM 4 OP2 C B 13 33.130 103.068 83.292 1.00105.51 O
ATOM 5 O5' C B 13 31.342 103.868 84.840 1.00104.62 O
ATOM 6 C5' C B 13 31.049 103.055 85.960 1.00103.25 C
ATOM 7 C4' C B 13 30.169 103.815 86.915 1.00102.22 C
ATOM 8 O4' C B 13 29.390 104.790 86.179 1.00100.90 O
ATOM 9 C3' C B 13 29.157 102.944 87.629 1.00102.00 C
ATOM 10 O3' C B 13 29.722 102.355 88.791 1.00102.32 O
ATOM 11 C2' C B 13 28.017 103.915 87.908 1.00101.21 C
ATOM 12 O2' C B 13 28.239 104.693 89.065 1.00100.64 O
ATOM 13 C1' C B 13 28.064 104.811 86.667 1.00100.58 C
ATOM 14 N1 C B 13 27.212 104.324 85.577 1.00100.33 N
ATOM 15 C2 C B 13 25.819 104.281 85.744 1.00100.69 C
ATOM 16 O2 C B 13 25.319 104.645 86.798 1.00101.19 O
ATOM 17 N3 C B 13 25.055 103.841 84.746 1.00100.65 N
ATOM 18 C4 C B 13 25.599 103.440 83.615 1.00100.72 C
ATOM 19 N4 C B 13 24.772 103.011 82.675 1.00101.45 N
ATOM 20 C5 C B 13 27.011 103.464 83.401 1.00100.47 C
ATOM 21 C6 C B 13 27.774 103.912 84.402 1.00100.07 C
ATOM 22 P C B 14 29.337 100.842 89.172 1.00102.46 P
ATOM 23 OP1 C B 14 30.045 100.465 90.419 1.00102.86 O
ATOM 24 OP2 C B 14 29.497 100.005 87.954 1.00102.47 O
ATOM 25 O5' C B 14 27.790 100.938 89.517 1.00101.69 O
TER
Atoms:
C4: (26.118,105.932,81.479)
N3: (26.241,106.466,82.761)
OP1: (33.334,104.793,78.620)
OP2: (30.805,104.563,78.196)
C2: (27.389,106.939,83.352)
C1': (29.750,107.409,83.135)
C3': (31.602,105.937,82.986)
O5': (31.637,105.850,80.145)
O4': (30.574,107.845,82.070)
C5': (32.395,106.891,80.765)
P: (31.963,105.374,78.659)
C4': (31.857,107.177,82.147)
C2': (30.532,106.393,83.970)
O2': (31.075,107.002,85.124)
N1: (28.509,106.874,82.565)
O4: (25.021,105.522,81.082)
O2: (27.422,107.383,84.491)
C6: (28.464,106.345,81.291)
C5: (27.340,105.888,80.737)
O3': (32.787,105.524,83.649)
N3: (26.241,106.466,82.761)
OP1: (33.334,104.793,78.620)
OP2: (30.805,104.563,78.196)
C2: (27.389,106.939,83.352)
C1': (29.750,107.409,83.135)
C3': (31.602,105.937,82.986)
O5': (31.637,105.850,80.145)
O4': (30.574,107.845,82.070)
C5': (32.395,106.891,80.765)
P: (31.963,105.374,78.659)
C4': (31.857,107.177,82.147)
C2': (30.532,106.393,83.970)
O2': (31.075,107.002,85.124)
N1: (28.509,106.874,82.565)
O4: (25.021,105.522,81.082)
O2: (27.422,107.383,84.491)
C6: (28.464,106.345,81.291)
C5: (27.340,105.888,80.737)
O3': (32.787,105.524,83.649)
C2: (25.819,104.281,85.744)
OP1: (33.708,104.169,85.546)
OP2: (33.130,103.068,83.292)
C4: (25.599,103.440,83.615)
O5': (31.342,103.868,84.840)
C3': (29.157,102.944,87.629)
C1': (28.064,104.811,86.667)
O4': (29.390,104.790,86.179)
C5': (31.049,103.055,85.960)
P: (32.837,104.079,84.344)
O2: (25.319,104.645,86.798)
C4': (30.169,103.815,86.915)
C2': (28.017,103.915,87.908)
O2': (28.239,104.693,89.065)
N1: (27.212,104.324,85.577)
N3: (25.055,103.841,84.746)
N4: (24.772,103.011,82.675)
C6: (27.774,103.912,84.402)
C5: (27.011,103.464,83.401)
O3': (29.722,102.355,88.791)
OP1: (33.708,104.169,85.546)
OP2: (33.130,103.068,83.292)
C4: (25.599,103.440,83.615)
O5': (31.342,103.868,84.840)
C3': (29.157,102.944,87.629)
C1': (28.064,104.811,86.667)
O4': (29.390,104.790,86.179)
C5': (31.049,103.055,85.960)
P: (32.837,104.079,84.344)
O2: (25.319,104.645,86.798)
C4': (30.169,103.815,86.915)
C2': (28.017,103.915,87.908)
O2': (28.239,104.693,89.065)
N1: (27.212,104.324,85.577)
N3: (25.055,103.841,84.746)
N4: (24.772,103.011,82.675)
C6: (27.774,103.912,84.402)
C5: (27.011,103.464,83.401)
O3': (29.722,102.355,88.791)
Image (generated by PyMOL):