Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3SD1:A44:A45
Extra
PDB:
ATOM 1 O3' G A 43 2.466 -12.345 25.890 1.00 31.61 O
ATOM 2 P U A 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 3 OP1 U A 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 4 OP2 U A 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 5 O5' U A 44 -0.008 -12.002 26.040 1.00 28.03 O
ATOM 6 C5' U A 44 -0.454 -12.585 24.825 1.00 25.50 C
ATOM 7 C4' U A 44 -1.877 -13.071 24.935 1.00 26.23 C
ATOM 8 O4' U A 44 -1.934 -14.250 25.784 1.00 24.64 O
ATOM 9 C3' U A 44 -2.860 -12.112 25.586 1.00 28.40 C
ATOM 10 O3' U A 44 -3.315 -11.096 24.713 1.00 24.62 O
ATOM 11 C2' U A 44 -3.959 -13.049 26.059 1.00 27.08 C
ATOM 12 O2' U A 44 -4.762 -13.467 24.965 1.00 23.44 O
ATOM 13 C1' U A 44 -3.132 -14.242 26.535 1.00 25.90 C
ATOM 14 N1 U A 44 -2.786 -14.126 27.968 1.00 24.92 N
ATOM 15 C2 U A 44 -3.711 -14.559 28.900 1.00 26.55 C
ATOM 16 O2 U A 44 -4.786 -15.037 28.589 1.00 25.16 O
ATOM 17 N3 U A 44 -3.328 -14.412 30.214 1.00 28.45 N
ATOM 18 C4 U A 44 -2.138 -13.880 30.675 1.00 28.21 C
ATOM 19 O4 U A 44 -1.928 -13.808 31.887 1.00 27.28 O
ATOM 20 C5 U A 44 -1.237 -13.454 29.649 1.00 27.89 C
ATOM 21 C6 U A 44 -1.586 -13.586 28.364 1.00 27.40 C
ATOM 22 P C A 45 -3.850 -9.707 25.315 1.00 29.10 P
ATOM 23 OP1 C A 45 -4.137 -8.812 24.165 1.00 27.95 O
ATOM 24 OP2 C A 45 -2.867 -9.264 26.335 1.00 30.12 O
ATOM 25 O5' C A 45 -5.210 -10.130 26.027 1.00 24.21 O
TER
ATOM 1 O3' U B 44 -3.315 -11.096 24.713 1.00 24.62 O
ATOM 2 P C B 45 -3.850 -9.707 25.315 1.00 29.10 P
ATOM 3 OP1 C B 45 -4.137 -8.812 24.165 1.00 27.95 O
ATOM 4 OP2 C B 45 -2.867 -9.264 26.335 1.00 30.12 O
ATOM 5 O5' C B 45 -5.210 -10.130 26.027 1.00 24.21 O
ATOM 6 C5' C B 45 -6.295 -10.661 25.280 1.00 25.13 C
ATOM 7 C4' C B 45 -7.428 -11.086 26.180 1.00 26.12 C
ATOM 8 O4' C B 45 -6.968 -12.119 27.092 1.00 27.52 O
ATOM 9 C3' C B 45 -7.994 -10.009 27.098 1.00 25.12 C
ATOM 10 O3' C B 45 -8.924 -9.158 26.450 1.00 24.15 O
ATOM 11 C2' C B 45 -8.602 -10.823 28.231 1.00 25.75 C
ATOM 12 O2' C B 45 -9.858 -11.359 27.845 1.00 25.28 O
ATOM 13 C1' C B 45 -7.600 -11.973 28.347 1.00 26.23 C
ATOM 14 N1 C B 45 -6.564 -11.702 29.365 1.00 26.42 N
ATOM 15 C2 C B 45 -6.896 -11.861 30.713 1.00 28.18 C
ATOM 16 O2 C B 45 -8.047 -12.222 31.001 1.00 27.00 O
ATOM 17 N3 C B 45 -5.963 -11.615 31.662 1.00 26.68 N
ATOM 18 C4 C B 45 -4.737 -11.226 31.307 1.00 29.81 C
ATOM 19 N4 C B 45 -3.844 -10.998 32.274 1.00 27.69 N
ATOM 20 C5 C B 45 -4.372 -11.057 29.938 1.00 27.53 C
ATOM 21 C6 C B 45 -5.307 -11.304 29.010 1.00 25.27 C
ATOM 22 P A B 46 -9.190 -7.673 27.009 1.00 28.06 P
ATOM 23 OP1 A B 46 -10.039 -6.977 26.011 1.00 32.28 O
ATOM 24 OP2 A B 46 -7.869 -7.090 27.351 1.00 29.96 O
ATOM 25 O5' A B 46 -10.027 -7.936 28.339 1.00 29.05 O
TER
ATOM 2 P U A 44 1.364 -11.195 26.102 1.00 34.59 P
ATOM 3 OP1 U A 44 1.464 -10.278 24.940 1.00 37.78 O
ATOM 4 OP2 U A 44 1.561 -10.643 27.464 1.00 29.83 O
ATOM 5 O5' U A 44 -0.008 -12.002 26.040 1.00 28.03 O
ATOM 6 C5' U A 44 -0.454 -12.585 24.825 1.00 25.50 C
ATOM 7 C4' U A 44 -1.877 -13.071 24.935 1.00 26.23 C
ATOM 8 O4' U A 44 -1.934 -14.250 25.784 1.00 24.64 O
ATOM 9 C3' U A 44 -2.860 -12.112 25.586 1.00 28.40 C
ATOM 10 O3' U A 44 -3.315 -11.096 24.713 1.00 24.62 O
ATOM 11 C2' U A 44 -3.959 -13.049 26.059 1.00 27.08 C
ATOM 12 O2' U A 44 -4.762 -13.467 24.965 1.00 23.44 O
ATOM 13 C1' U A 44 -3.132 -14.242 26.535 1.00 25.90 C
ATOM 14 N1 U A 44 -2.786 -14.126 27.968 1.00 24.92 N
ATOM 15 C2 U A 44 -3.711 -14.559 28.900 1.00 26.55 C
ATOM 16 O2 U A 44 -4.786 -15.037 28.589 1.00 25.16 O
ATOM 17 N3 U A 44 -3.328 -14.412 30.214 1.00 28.45 N
ATOM 18 C4 U A 44 -2.138 -13.880 30.675 1.00 28.21 C
ATOM 19 O4 U A 44 -1.928 -13.808 31.887 1.00 27.28 O
ATOM 20 C5 U A 44 -1.237 -13.454 29.649 1.00 27.89 C
ATOM 21 C6 U A 44 -1.586 -13.586 28.364 1.00 27.40 C
ATOM 22 P C A 45 -3.850 -9.707 25.315 1.00 29.10 P
ATOM 23 OP1 C A 45 -4.137 -8.812 24.165 1.00 27.95 O
ATOM 24 OP2 C A 45 -2.867 -9.264 26.335 1.00 30.12 O
ATOM 25 O5' C A 45 -5.210 -10.130 26.027 1.00 24.21 O
TER
ATOM 1 O3' U B 44 -3.315 -11.096 24.713 1.00 24.62 O
ATOM 2 P C B 45 -3.850 -9.707 25.315 1.00 29.10 P
ATOM 3 OP1 C B 45 -4.137 -8.812 24.165 1.00 27.95 O
ATOM 4 OP2 C B 45 -2.867 -9.264 26.335 1.00 30.12 O
ATOM 5 O5' C B 45 -5.210 -10.130 26.027 1.00 24.21 O
ATOM 6 C5' C B 45 -6.295 -10.661 25.280 1.00 25.13 C
ATOM 7 C4' C B 45 -7.428 -11.086 26.180 1.00 26.12 C
ATOM 8 O4' C B 45 -6.968 -12.119 27.092 1.00 27.52 O
ATOM 9 C3' C B 45 -7.994 -10.009 27.098 1.00 25.12 C
ATOM 10 O3' C B 45 -8.924 -9.158 26.450 1.00 24.15 O
ATOM 11 C2' C B 45 -8.602 -10.823 28.231 1.00 25.75 C
ATOM 12 O2' C B 45 -9.858 -11.359 27.845 1.00 25.28 O
ATOM 13 C1' C B 45 -7.600 -11.973 28.347 1.00 26.23 C
ATOM 14 N1 C B 45 -6.564 -11.702 29.365 1.00 26.42 N
ATOM 15 C2 C B 45 -6.896 -11.861 30.713 1.00 28.18 C
ATOM 16 O2 C B 45 -8.047 -12.222 31.001 1.00 27.00 O
ATOM 17 N3 C B 45 -5.963 -11.615 31.662 1.00 26.68 N
ATOM 18 C4 C B 45 -4.737 -11.226 31.307 1.00 29.81 C
ATOM 19 N4 C B 45 -3.844 -10.998 32.274 1.00 27.69 N
ATOM 20 C5 C B 45 -4.372 -11.057 29.938 1.00 27.53 C
ATOM 21 C6 C B 45 -5.307 -11.304 29.010 1.00 25.27 C
ATOM 22 P A B 46 -9.190 -7.673 27.009 1.00 28.06 P
ATOM 23 OP1 A B 46 -10.039 -6.977 26.011 1.00 32.28 O
ATOM 24 OP2 A B 46 -7.869 -7.090 27.351 1.00 29.96 O
ATOM 25 O5' A B 46 -10.027 -7.936 28.339 1.00 29.05 O
TER
Atoms:
C4: (-2.138,-13.880,30.675)
N3: (-3.328,-14.412,30.214)
OP1: (1.464,-10.278,24.940)
OP2: (1.561,-10.643,27.464)
C2: (-3.711,-14.559,28.900)
C1': (-3.132,-14.242,26.535)
C3': (-2.860,-12.112,25.586)
O5': (-0.008,-12.002,26.040)
O4': (-1.934,-14.250,25.784)
C5': (-0.454,-12.585,24.825)
P: (1.364,-11.195,26.102)
C4': (-1.877,-13.071,24.935)
C2': (-3.959,-13.049,26.059)
O2': (-4.762,-13.467,24.965)
N1: (-2.786,-14.126,27.968)
O4: (-1.928,-13.808,31.887)
O2: (-4.786,-15.037,28.589)
C6: (-1.586,-13.586,28.364)
C5: (-1.237,-13.454,29.649)
O3': (-3.315,-11.096,24.713)
N3: (-3.328,-14.412,30.214)
OP1: (1.464,-10.278,24.940)
OP2: (1.561,-10.643,27.464)
C2: (-3.711,-14.559,28.900)
C1': (-3.132,-14.242,26.535)
C3': (-2.860,-12.112,25.586)
O5': (-0.008,-12.002,26.040)
O4': (-1.934,-14.250,25.784)
C5': (-0.454,-12.585,24.825)
P: (1.364,-11.195,26.102)
C4': (-1.877,-13.071,24.935)
C2': (-3.959,-13.049,26.059)
O2': (-4.762,-13.467,24.965)
N1: (-2.786,-14.126,27.968)
O4: (-1.928,-13.808,31.887)
O2: (-4.786,-15.037,28.589)
C6: (-1.586,-13.586,28.364)
C5: (-1.237,-13.454,29.649)
O3': (-3.315,-11.096,24.713)
C2: (-6.896,-11.861,30.713)
OP1: (-4.137,-8.812,24.165)
OP2: (-2.867,-9.264,26.335)
C4: (-4.737,-11.226,31.307)
O5': (-5.210,-10.130,26.027)
C3': (-7.994,-10.009,27.098)
C1': (-7.600,-11.973,28.347)
O4': (-6.968,-12.119,27.092)
C5': (-6.295,-10.661,25.280)
P: (-3.850,-9.707,25.315)
O2: (-8.047,-12.222,31.001)
C4': (-7.428,-11.086,26.180)
C2': (-8.602,-10.823,28.231)
O2': (-9.858,-11.359,27.845)
N1: (-6.564,-11.702,29.365)
N3: (-5.963,-11.615,31.662)
N4: (-3.844,-10.998,32.274)
C6: (-5.307,-11.304,29.010)
C5: (-4.372,-11.057,29.938)
O3': (-8.924,-9.158,26.450)
OP1: (-4.137,-8.812,24.165)
OP2: (-2.867,-9.264,26.335)
C4: (-4.737,-11.226,31.307)
O5': (-5.210,-10.130,26.027)
C3': (-7.994,-10.009,27.098)
C1': (-7.600,-11.973,28.347)
O4': (-6.968,-12.119,27.092)
C5': (-6.295,-10.661,25.280)
P: (-3.850,-9.707,25.315)
O2: (-8.047,-12.222,31.001)
C4': (-7.428,-11.086,26.180)
C2': (-8.602,-10.823,28.231)
O2': (-9.858,-11.359,27.845)
N1: (-6.564,-11.702,29.365)
N3: (-5.963,-11.615,31.662)
N4: (-3.844,-10.998,32.274)
C6: (-5.307,-11.304,29.010)
C5: (-4.372,-11.057,29.938)
O3': (-8.924,-9.158,26.450)
Image (generated by PyMOL):