Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:025:026
Extra
PDB:
ATOM 1 O3' C A 24 47.348 125.197 47.695 1.00 40.77 O
ATOM 2 P U A 25 48.183 124.694 46.417 1.00 39.47 P
ATOM 3 OP1 U A 25 49.319 123.881 46.909 1.00 42.11 O
ATOM 4 OP2 U A 25 48.448 125.843 45.527 1.00 40.88 O
ATOM 5 O5' U A 25 47.181 123.704 45.683 1.00 40.83 O
ATOM 6 C5' U A 25 46.825 122.447 46.280 1.00 40.77 C
ATOM 7 C4' U A 25 45.755 121.765 45.467 1.00 40.80 C
ATOM 8 O4' U A 25 44.538 122.561 45.474 1.00 42.31 O
ATOM 9 C3' U A 25 46.056 121.614 43.994 1.00 40.65 C
ATOM 10 O3' U A 25 46.929 120.534 43.729 1.00 40.55 O
ATOM 11 C2' U A 25 44.668 121.406 43.413 1.00 41.29 C
ATOM 12 O2' U A 25 44.173 120.101 43.645 1.00 42.42 O
ATOM 13 C1' U A 25 43.861 122.404 44.240 1.00 42.31 C
ATOM 14 N1 U A 25 43.799 123.711 43.576 1.00 46.05 N
ATOM 15 C2 U A 25 42.789 123.917 42.640 1.00 48.20 C
ATOM 16 O2 U A 25 41.948 123.076 42.368 1.00 47.68 O
ATOM 17 N3 U A 25 42.806 125.148 42.031 1.00 48.79 N
ATOM 18 C4 U A 25 43.698 126.174 42.255 1.00 48.85 C
ATOM 19 O4 U A 25 43.560 127.236 41.648 1.00 49.36 O
ATOM 20 C5 U A 25 44.704 125.891 43.241 1.00 48.99 C
ATOM 21 C6 U A 25 44.717 124.702 43.854 1.00 46.92 C
ATOM 22 P C A 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 23 OP1 C A 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 24 OP2 C A 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 25 O5' C A 26 46.423 120.006 41.315 1.00 43.32 O
TER
ATOM 1 O3' U B 25 46.929 120.534 43.729 1.00 40.55 O
ATOM 2 P C B 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 3 OP1 C B 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 4 OP2 C B 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 5 O5' C B 26 46.423 120.006 41.315 1.00 43.32 O
ATOM 6 C5' C B 26 45.792 118.719 41.405 1.00 43.18 C
ATOM 7 C4' C B 26 44.648 118.642 40.429 1.00 46.01 C
ATOM 8 O4' C B 26 43.719 119.717 40.720 1.00 47.75 O
ATOM 9 C3' C B 26 44.996 118.881 38.969 1.00 48.00 C
ATOM 10 O3' C B 26 45.484 117.718 38.332 1.00 50.44 O
ATOM 11 C2' C B 26 43.657 119.298 38.396 1.00 48.04 C
ATOM 12 O2' C B 26 42.775 118.203 38.291 1.00 49.78 O
ATOM 13 C1' C B 26 43.141 120.192 39.513 1.00 47.98 C
ATOM 14 N1 C B 26 43.535 121.596 39.315 1.00 48.79 N
ATOM 15 C2 C B 26 42.727 122.404 38.521 1.00 48.98 C
ATOM 16 O2 C B 26 41.723 121.909 37.993 1.00 48.81 O
ATOM 17 N3 C B 26 43.055 123.706 38.346 1.00 48.95 N
ATOM 18 C4 C B 26 44.143 124.203 38.934 1.00 48.50 C
ATOM 19 N4 C B 26 44.410 125.496 38.757 1.00 47.91 N
ATOM 20 C5 C B 26 44.998 123.397 39.736 1.00 50.12 C
ATOM 21 C6 C B 26 44.662 122.110 39.898 1.00 50.22 C
ATOM 22 P A B 27 46.486 117.866 37.089 1.00 51.79 P
ATOM 23 OP1 A B 27 46.869 116.485 36.710 1.00 50.86 O
ATOM 24 OP2 A B 27 47.544 118.852 37.448 1.00 49.72 O
ATOM 25 O5' A B 27 45.576 118.485 35.933 1.00 51.85 O
TER
ATOM 2 P U A 25 48.183 124.694 46.417 1.00 39.47 P
ATOM 3 OP1 U A 25 49.319 123.881 46.909 1.00 42.11 O
ATOM 4 OP2 U A 25 48.448 125.843 45.527 1.00 40.88 O
ATOM 5 O5' U A 25 47.181 123.704 45.683 1.00 40.83 O
ATOM 6 C5' U A 25 46.825 122.447 46.280 1.00 40.77 C
ATOM 7 C4' U A 25 45.755 121.765 45.467 1.00 40.80 C
ATOM 8 O4' U A 25 44.538 122.561 45.474 1.00 42.31 O
ATOM 9 C3' U A 25 46.056 121.614 43.994 1.00 40.65 C
ATOM 10 O3' U A 25 46.929 120.534 43.729 1.00 40.55 O
ATOM 11 C2' U A 25 44.668 121.406 43.413 1.00 41.29 C
ATOM 12 O2' U A 25 44.173 120.101 43.645 1.00 42.42 O
ATOM 13 C1' U A 25 43.861 122.404 44.240 1.00 42.31 C
ATOM 14 N1 U A 25 43.799 123.711 43.576 1.00 46.05 N
ATOM 15 C2 U A 25 42.789 123.917 42.640 1.00 48.20 C
ATOM 16 O2 U A 25 41.948 123.076 42.368 1.00 47.68 O
ATOM 17 N3 U A 25 42.806 125.148 42.031 1.00 48.79 N
ATOM 18 C4 U A 25 43.698 126.174 42.255 1.00 48.85 C
ATOM 19 O4 U A 25 43.560 127.236 41.648 1.00 49.36 O
ATOM 20 C5 U A 25 44.704 125.891 43.241 1.00 48.99 C
ATOM 21 C6 U A 25 44.717 124.702 43.854 1.00 46.92 C
ATOM 22 P C A 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 23 OP1 C A 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 24 OP2 C A 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 25 O5' C A 26 46.423 120.006 41.315 1.00 43.32 O
TER
ATOM 1 O3' U B 25 46.929 120.534 43.729 1.00 40.55 O
ATOM 2 P C B 26 47.618 120.423 42.285 1.00 42.15 P
ATOM 3 OP1 C B 26 48.647 119.342 42.326 1.00 38.01 O
ATOM 4 OP2 C B 26 48.005 121.797 41.886 1.00 40.41 O
ATOM 5 O5' C B 26 46.423 120.006 41.315 1.00 43.32 O
ATOM 6 C5' C B 26 45.792 118.719 41.405 1.00 43.18 C
ATOM 7 C4' C B 26 44.648 118.642 40.429 1.00 46.01 C
ATOM 8 O4' C B 26 43.719 119.717 40.720 1.00 47.75 O
ATOM 9 C3' C B 26 44.996 118.881 38.969 1.00 48.00 C
ATOM 10 O3' C B 26 45.484 117.718 38.332 1.00 50.44 O
ATOM 11 C2' C B 26 43.657 119.298 38.396 1.00 48.04 C
ATOM 12 O2' C B 26 42.775 118.203 38.291 1.00 49.78 O
ATOM 13 C1' C B 26 43.141 120.192 39.513 1.00 47.98 C
ATOM 14 N1 C B 26 43.535 121.596 39.315 1.00 48.79 N
ATOM 15 C2 C B 26 42.727 122.404 38.521 1.00 48.98 C
ATOM 16 O2 C B 26 41.723 121.909 37.993 1.00 48.81 O
ATOM 17 N3 C B 26 43.055 123.706 38.346 1.00 48.95 N
ATOM 18 C4 C B 26 44.143 124.203 38.934 1.00 48.50 C
ATOM 19 N4 C B 26 44.410 125.496 38.757 1.00 47.91 N
ATOM 20 C5 C B 26 44.998 123.397 39.736 1.00 50.12 C
ATOM 21 C6 C B 26 44.662 122.110 39.898 1.00 50.22 C
ATOM 22 P A B 27 46.486 117.866 37.089 1.00 51.79 P
ATOM 23 OP1 A B 27 46.869 116.485 36.710 1.00 50.86 O
ATOM 24 OP2 A B 27 47.544 118.852 37.448 1.00 49.72 O
ATOM 25 O5' A B 27 45.576 118.485 35.933 1.00 51.85 O
TER
Atoms:
C4: (43.698,126.174,42.255)
N3: (42.806,125.148,42.031)
OP1: (49.319,123.881,46.909)
OP2: (48.448,125.843,45.527)
C2: (42.789,123.917,42.640)
C1': (43.861,122.404,44.240)
C3': (46.056,121.614,43.994)
O5': (47.181,123.704,45.683)
O4': (44.538,122.561,45.474)
C5': (46.825,122.447,46.280)
P: (48.183,124.694,46.417)
C4': (45.755,121.765,45.467)
C2': (44.668,121.406,43.413)
O2': (44.173,120.101,43.645)
N1: (43.799,123.711,43.576)
O4: (43.560,127.236,41.648)
O2: (41.948,123.076,42.368)
C6: (44.717,124.702,43.854)
C5: (44.704,125.891,43.241)
O3': (46.929,120.534,43.729)
N3: (42.806,125.148,42.031)
OP1: (49.319,123.881,46.909)
OP2: (48.448,125.843,45.527)
C2: (42.789,123.917,42.640)
C1': (43.861,122.404,44.240)
C3': (46.056,121.614,43.994)
O5': (47.181,123.704,45.683)
O4': (44.538,122.561,45.474)
C5': (46.825,122.447,46.280)
P: (48.183,124.694,46.417)
C4': (45.755,121.765,45.467)
C2': (44.668,121.406,43.413)
O2': (44.173,120.101,43.645)
N1: (43.799,123.711,43.576)
O4: (43.560,127.236,41.648)
O2: (41.948,123.076,42.368)
C6: (44.717,124.702,43.854)
C5: (44.704,125.891,43.241)
O3': (46.929,120.534,43.729)
C2: (42.727,122.404,38.521)
OP1: (48.647,119.342,42.326)
OP2: (48.005,121.797,41.886)
C4: (44.143,124.203,38.934)
O5': (46.423,120.006,41.315)
C3': (44.996,118.881,38.969)
C1': (43.141,120.192,39.513)
O4': (43.719,119.717,40.720)
C5': (45.792,118.719,41.405)
P: (47.618,120.423,42.285)
O2: (41.723,121.909,37.993)
C4': (44.648,118.642,40.429)
C2': (43.657,119.298,38.396)
O2': (42.775,118.203,38.291)
N1: (43.535,121.596,39.315)
N3: (43.055,123.706,38.346)
N4: (44.410,125.496,38.757)
C6: (44.662,122.110,39.898)
C5: (44.998,123.397,39.736)
O3': (45.484,117.718,38.332)
OP1: (48.647,119.342,42.326)
OP2: (48.005,121.797,41.886)
C4: (44.143,124.203,38.934)
O5': (46.423,120.006,41.315)
C3': (44.996,118.881,38.969)
C1': (43.141,120.192,39.513)
O4': (43.719,119.717,40.720)
C5': (45.792,118.719,41.405)
P: (47.618,120.423,42.285)
O2: (41.723,121.909,37.993)
C4': (44.648,118.642,40.429)
C2': (43.657,119.298,38.396)
O2': (42.775,118.203,38.291)
N1: (43.535,121.596,39.315)
N3: (43.055,123.706,38.346)
N4: (44.410,125.496,38.757)
C6: (44.662,122.110,39.898)
C5: (44.998,123.397,39.736)
O3': (45.484,117.718,38.332)
Image (generated by PyMOL):