Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0288:0289
Extra
PDB:
ATOM 1 O3' U A 287 40.666 133.694 26.443 1.00 78.36 O
ATOM 2 P U A 288 39.210 134.380 26.550 1.00 78.79 P
ATOM 3 OP1 U A 288 39.175 135.189 27.806 1.00 77.49 O
ATOM 4 OP2 U A 288 38.182 133.318 26.329 1.00 77.87 O
ATOM 5 O5' U A 288 39.160 135.383 25.307 1.00 78.29 O
ATOM 6 C5' U A 288 39.947 136.595 25.293 1.00 76.21 C
ATOM 7 C4' U A 288 39.777 137.329 23.976 1.00 75.01 C
ATOM 8 O4' U A 288 40.231 136.487 22.881 1.00 74.86 O
ATOM 9 C3' U A 288 38.364 137.714 23.560 1.00 73.90 C
ATOM 10 O3' U A 288 37.893 138.891 24.207 1.00 73.64 O
ATOM 11 C2' U A 288 38.532 137.936 22.065 1.00 73.90 C
ATOM 12 O2' U A 288 39.136 139.175 21.756 1.00 74.35 O
ATOM 13 C1' U A 288 39.501 136.809 21.707 1.00 74.67 C
ATOM 14 N1 U A 288 38.792 135.612 21.229 1.00 75.60 N
ATOM 15 C2 U A 288 38.453 135.570 19.886 1.00 76.36 C
ATOM 16 O2 U A 288 38.738 136.462 19.099 1.00 78.04 O
ATOM 17 N3 U A 288 37.770 134.446 19.495 1.00 75.67 N
ATOM 18 C4 U A 288 37.406 133.381 20.282 1.00 75.66 C
ATOM 19 O4 U A 288 36.774 132.452 19.781 1.00 75.65 O
ATOM 20 C5 U A 288 37.801 133.489 21.656 1.00 75.66 C
ATOM 21 C6 U A 288 38.462 134.573 22.073 1.00 75.23 C
ATOM 22 P C A 289 36.314 139.080 24.472 1.00 74.11 P
ATOM 23 OP1 C A 289 36.165 140.303 25.306 1.00 71.70 O
ATOM 24 OP2 C A 289 35.779 137.780 24.968 1.00 74.04 O
ATOM 25 O5' C A 289 35.690 139.352 23.025 1.00 74.75 O
TER
ATOM 1 O3' U B 288 37.893 138.891 24.207 1.00 73.64 O
ATOM 2 P C B 289 36.314 139.080 24.472 1.00 74.11 P
ATOM 3 OP1 C B 289 36.165 140.303 25.306 1.00 71.70 O
ATOM 4 OP2 C B 289 35.779 137.780 24.968 1.00 74.04 O
ATOM 5 O5' C B 289 35.690 139.352 23.025 1.00 74.75 O
ATOM 6 C5' C B 289 36.154 140.457 22.217 1.00 75.96 C
ATOM 7 C4' C B 289 35.673 140.336 20.782 1.00 75.53 C
ATOM 8 O4' C B 289 36.128 139.092 20.190 1.00 75.20 O
ATOM 9 C3' C B 289 34.173 140.284 20.549 1.00 75.85 C
ATOM 10 O3' C B 289 33.589 141.582 20.640 1.00 76.62 O
ATOM 11 C2' C B 289 34.099 139.744 19.123 1.00 76.05 C
ATOM 12 O2' C B 289 34.315 140.736 18.141 1.00 75.02 O
ATOM 13 C1' C B 289 35.282 138.769 19.097 1.00 76.85 C
ATOM 14 N1 C B 289 34.899 137.343 19.167 1.00 78.90 N
ATOM 15 C2 C B 289 34.235 136.755 18.059 1.00 80.12 C
ATOM 16 O2 C B 289 33.979 137.450 17.060 1.00 81.09 O
ATOM 17 N3 C B 289 33.895 135.449 18.113 1.00 80.75 N
ATOM 18 C4 C B 289 34.184 134.727 19.200 1.00 81.32 C
ATOM 19 N4 C B 289 33.842 133.435 19.200 1.00 81.16 N
ATOM 20 C5 C B 289 34.841 135.296 20.335 1.00 80.82 C
ATOM 21 C6 C B 289 35.178 136.593 20.276 1.00 79.62 C
ATOM 22 P A B 290 31.993 141.735 20.777 1.00 77.22 P
ATOM 23 OP1 A B 290 31.704 143.172 21.033 1.00 76.40 O
ATOM 24 OP2 A B 290 31.500 140.708 21.728 1.00 77.22 O
ATOM 25 O5' A B 290 31.441 141.368 19.328 1.00 77.81 O
TER
ATOM 2 P U A 288 39.210 134.380 26.550 1.00 78.79 P
ATOM 3 OP1 U A 288 39.175 135.189 27.806 1.00 77.49 O
ATOM 4 OP2 U A 288 38.182 133.318 26.329 1.00 77.87 O
ATOM 5 O5' U A 288 39.160 135.383 25.307 1.00 78.29 O
ATOM 6 C5' U A 288 39.947 136.595 25.293 1.00 76.21 C
ATOM 7 C4' U A 288 39.777 137.329 23.976 1.00 75.01 C
ATOM 8 O4' U A 288 40.231 136.487 22.881 1.00 74.86 O
ATOM 9 C3' U A 288 38.364 137.714 23.560 1.00 73.90 C
ATOM 10 O3' U A 288 37.893 138.891 24.207 1.00 73.64 O
ATOM 11 C2' U A 288 38.532 137.936 22.065 1.00 73.90 C
ATOM 12 O2' U A 288 39.136 139.175 21.756 1.00 74.35 O
ATOM 13 C1' U A 288 39.501 136.809 21.707 1.00 74.67 C
ATOM 14 N1 U A 288 38.792 135.612 21.229 1.00 75.60 N
ATOM 15 C2 U A 288 38.453 135.570 19.886 1.00 76.36 C
ATOM 16 O2 U A 288 38.738 136.462 19.099 1.00 78.04 O
ATOM 17 N3 U A 288 37.770 134.446 19.495 1.00 75.67 N
ATOM 18 C4 U A 288 37.406 133.381 20.282 1.00 75.66 C
ATOM 19 O4 U A 288 36.774 132.452 19.781 1.00 75.65 O
ATOM 20 C5 U A 288 37.801 133.489 21.656 1.00 75.66 C
ATOM 21 C6 U A 288 38.462 134.573 22.073 1.00 75.23 C
ATOM 22 P C A 289 36.314 139.080 24.472 1.00 74.11 P
ATOM 23 OP1 C A 289 36.165 140.303 25.306 1.00 71.70 O
ATOM 24 OP2 C A 289 35.779 137.780 24.968 1.00 74.04 O
ATOM 25 O5' C A 289 35.690 139.352 23.025 1.00 74.75 O
TER
ATOM 1 O3' U B 288 37.893 138.891 24.207 1.00 73.64 O
ATOM 2 P C B 289 36.314 139.080 24.472 1.00 74.11 P
ATOM 3 OP1 C B 289 36.165 140.303 25.306 1.00 71.70 O
ATOM 4 OP2 C B 289 35.779 137.780 24.968 1.00 74.04 O
ATOM 5 O5' C B 289 35.690 139.352 23.025 1.00 74.75 O
ATOM 6 C5' C B 289 36.154 140.457 22.217 1.00 75.96 C
ATOM 7 C4' C B 289 35.673 140.336 20.782 1.00 75.53 C
ATOM 8 O4' C B 289 36.128 139.092 20.190 1.00 75.20 O
ATOM 9 C3' C B 289 34.173 140.284 20.549 1.00 75.85 C
ATOM 10 O3' C B 289 33.589 141.582 20.640 1.00 76.62 O
ATOM 11 C2' C B 289 34.099 139.744 19.123 1.00 76.05 C
ATOM 12 O2' C B 289 34.315 140.736 18.141 1.00 75.02 O
ATOM 13 C1' C B 289 35.282 138.769 19.097 1.00 76.85 C
ATOM 14 N1 C B 289 34.899 137.343 19.167 1.00 78.90 N
ATOM 15 C2 C B 289 34.235 136.755 18.059 1.00 80.12 C
ATOM 16 O2 C B 289 33.979 137.450 17.060 1.00 81.09 O
ATOM 17 N3 C B 289 33.895 135.449 18.113 1.00 80.75 N
ATOM 18 C4 C B 289 34.184 134.727 19.200 1.00 81.32 C
ATOM 19 N4 C B 289 33.842 133.435 19.200 1.00 81.16 N
ATOM 20 C5 C B 289 34.841 135.296 20.335 1.00 80.82 C
ATOM 21 C6 C B 289 35.178 136.593 20.276 1.00 79.62 C
ATOM 22 P A B 290 31.993 141.735 20.777 1.00 77.22 P
ATOM 23 OP1 A B 290 31.704 143.172 21.033 1.00 76.40 O
ATOM 24 OP2 A B 290 31.500 140.708 21.728 1.00 77.22 O
ATOM 25 O5' A B 290 31.441 141.368 19.328 1.00 77.81 O
TER
Atoms:
C4: (37.406,133.381,20.282)
N3: (37.770,134.446,19.495)
OP1: (39.175,135.189,27.806)
OP2: (38.182,133.318,26.329)
C2: (38.453,135.570,19.886)
C1': (39.501,136.809,21.707)
C3': (38.364,137.714,23.560)
O5': (39.160,135.383,25.307)
O4': (40.231,136.487,22.881)
C5': (39.947,136.595,25.293)
P: (39.210,134.380,26.550)
C4': (39.777,137.329,23.976)
C2': (38.532,137.936,22.065)
O2': (39.136,139.175,21.756)
N1: (38.792,135.612,21.229)
O4: (36.774,132.452,19.781)
O2: (38.738,136.462,19.099)
C6: (38.462,134.573,22.073)
C5: (37.801,133.489,21.656)
O3': (37.893,138.891,24.207)
N3: (37.770,134.446,19.495)
OP1: (39.175,135.189,27.806)
OP2: (38.182,133.318,26.329)
C2: (38.453,135.570,19.886)
C1': (39.501,136.809,21.707)
C3': (38.364,137.714,23.560)
O5': (39.160,135.383,25.307)
O4': (40.231,136.487,22.881)
C5': (39.947,136.595,25.293)
P: (39.210,134.380,26.550)
C4': (39.777,137.329,23.976)
C2': (38.532,137.936,22.065)
O2': (39.136,139.175,21.756)
N1: (38.792,135.612,21.229)
O4: (36.774,132.452,19.781)
O2: (38.738,136.462,19.099)
C6: (38.462,134.573,22.073)
C5: (37.801,133.489,21.656)
O3': (37.893,138.891,24.207)
C2: (34.235,136.755,18.059)
OP1: (36.165,140.303,25.306)
OP2: (35.779,137.780,24.968)
C4: (34.184,134.727,19.200)
O5': (35.690,139.352,23.025)
C3': (34.173,140.284,20.549)
C1': (35.282,138.769,19.097)
O4': (36.128,139.092,20.190)
C5': (36.154,140.457,22.217)
P: (36.314,139.080,24.472)
O2: (33.979,137.450,17.060)
C4': (35.673,140.336,20.782)
C2': (34.099,139.744,19.123)
O2': (34.315,140.736,18.141)
N1: (34.899,137.343,19.167)
N3: (33.895,135.449,18.113)
N4: (33.842,133.435,19.200)
C6: (35.178,136.593,20.276)
C5: (34.841,135.296,20.335)
O3': (33.589,141.582,20.640)
OP1: (36.165,140.303,25.306)
OP2: (35.779,137.780,24.968)
C4: (34.184,134.727,19.200)
O5': (35.690,139.352,23.025)
C3': (34.173,140.284,20.549)
C1': (35.282,138.769,19.097)
O4': (36.128,139.092,20.190)
C5': (36.154,140.457,22.217)
P: (36.314,139.080,24.472)
O2: (33.979,137.450,17.060)
C4': (35.673,140.336,20.782)
C2': (34.099,139.744,19.123)
O2': (34.315,140.736,18.141)
N1: (34.899,137.343,19.167)
N3: (33.895,135.449,18.113)
N4: (33.842,133.435,19.200)
C6: (35.178,136.593,20.276)
C5: (34.841,135.296,20.335)
O3': (33.589,141.582,20.640)
Image (generated by PyMOL):