Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:025:026
Extra
PDB:
ATOM 1 O3' C A 24 47.131 125.009 47.440 1.00 35.93 O
ATOM 2 P U A 25 47.979 124.518 46.171 1.00 34.95 P
ATOM 3 OP1 U A 25 49.158 123.780 46.673 1.00 36.00 O
ATOM 4 OP2 U A 25 48.179 125.694 45.300 1.00 36.50 O
ATOM 5 O5' U A 25 47.008 123.505 45.413 1.00 35.98 O
ATOM 6 C5' U A 25 46.592 122.265 46.025 1.00 35.83 C
ATOM 7 C4' U A 25 45.512 121.595 45.200 1.00 35.46 C
ATOM 8 O4' U A 25 44.292 122.388 45.218 1.00 35.45 O
ATOM 9 C3' U A 25 45.806 121.436 43.720 1.00 35.20 C
ATOM 10 O3' U A 25 46.652 120.335 43.446 1.00 35.70 O
ATOM 11 C2' U A 25 44.413 121.254 43.139 1.00 34.90 C
ATOM 12 O2' U A 25 43.886 119.962 43.350 1.00 35.19 O
ATOM 13 C1' U A 25 43.622 122.257 43.973 1.00 35.19 C
ATOM 14 N1 U A 25 43.575 123.569 43.311 1.00 36.30 N
ATOM 15 C2 U A 25 42.621 123.754 42.322 1.00 37.62 C
ATOM 16 O2 U A 25 41.813 122.899 42.011 1.00 38.97 O
ATOM 17 N3 U A 25 42.647 124.982 41.710 1.00 37.65 N
ATOM 18 C4 U A 25 43.498 126.026 41.980 1.00 37.39 C
ATOM 19 O4 U A 25 43.393 127.073 41.340 1.00 35.59 O
ATOM 20 C5 U A 25 44.444 125.766 43.026 1.00 38.08 C
ATOM 21 C6 U A 25 44.449 124.576 43.640 1.00 37.03 C
ATOM 22 P C A 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 23 OP1 C A 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 24 OP2 C A 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 25 O5' C A 26 46.141 119.827 41.035 1.00 34.98 O
TER
ATOM 1 O3' U B 25 46.652 120.335 43.446 1.00 35.70 O
ATOM 2 P C B 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 3 OP1 C B 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 4 OP2 C B 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 5 O5' C B 26 46.141 119.827 41.035 1.00 34.98 O
ATOM 6 C5' C B 26 45.422 118.603 41.198 1.00 34.69 C
ATOM 7 C4' C B 26 44.288 118.539 40.210 1.00 38.05 C
ATOM 8 O4' C B 26 43.350 119.616 40.471 1.00 38.96 O
ATOM 9 C3' C B 26 44.656 118.742 38.749 1.00 38.61 C
ATOM 10 O3' C B 26 45.152 117.553 38.161 1.00 40.82 O
ATOM 11 C2' C B 26 43.316 119.140 38.160 1.00 39.12 C
ATOM 12 O2' C B 26 42.440 118.037 38.113 1.00 40.65 O
ATOM 13 C1' C B 26 42.794 120.069 39.247 1.00 39.11 C
ATOM 14 N1 C B 26 43.205 121.466 39.036 1.00 40.44 N
ATOM 15 C2 C B 26 42.404 122.289 38.241 1.00 41.73 C
ATOM 16 O2 C B 26 41.409 121.803 37.682 1.00 43.19 O
ATOM 17 N3 C B 26 42.735 123.593 38.097 1.00 40.98 N
ATOM 18 C4 C B 26 43.818 124.075 38.702 1.00 39.77 C
ATOM 19 N4 C B 26 44.081 125.369 38.569 1.00 39.11 N
ATOM 20 C5 C B 26 44.674 123.250 39.480 1.00 41.13 C
ATOM 21 C6 C B 26 44.336 121.964 39.620 1.00 40.84 C
ATOM 22 P A B 27 46.138 117.645 36.897 1.00 43.59 P
ATOM 23 OP1 A B 27 46.466 116.251 36.510 1.00 43.23 O
ATOM 24 OP2 A B 27 47.235 118.594 37.203 1.00 43.80 O
ATOM 25 O5' A B 27 45.229 118.284 35.757 1.00 43.73 O
TER
ATOM 2 P U A 25 47.979 124.518 46.171 1.00 34.95 P
ATOM 3 OP1 U A 25 49.158 123.780 46.673 1.00 36.00 O
ATOM 4 OP2 U A 25 48.179 125.694 45.300 1.00 36.50 O
ATOM 5 O5' U A 25 47.008 123.505 45.413 1.00 35.98 O
ATOM 6 C5' U A 25 46.592 122.265 46.025 1.00 35.83 C
ATOM 7 C4' U A 25 45.512 121.595 45.200 1.00 35.46 C
ATOM 8 O4' U A 25 44.292 122.388 45.218 1.00 35.45 O
ATOM 9 C3' U A 25 45.806 121.436 43.720 1.00 35.20 C
ATOM 10 O3' U A 25 46.652 120.335 43.446 1.00 35.70 O
ATOM 11 C2' U A 25 44.413 121.254 43.139 1.00 34.90 C
ATOM 12 O2' U A 25 43.886 119.962 43.350 1.00 35.19 O
ATOM 13 C1' U A 25 43.622 122.257 43.973 1.00 35.19 C
ATOM 14 N1 U A 25 43.575 123.569 43.311 1.00 36.30 N
ATOM 15 C2 U A 25 42.621 123.754 42.322 1.00 37.62 C
ATOM 16 O2 U A 25 41.813 122.899 42.011 1.00 38.97 O
ATOM 17 N3 U A 25 42.647 124.982 41.710 1.00 37.65 N
ATOM 18 C4 U A 25 43.498 126.026 41.980 1.00 37.39 C
ATOM 19 O4 U A 25 43.393 127.073 41.340 1.00 35.59 O
ATOM 20 C5 U A 25 44.444 125.766 43.026 1.00 38.08 C
ATOM 21 C6 U A 25 44.449 124.576 43.640 1.00 37.03 C
ATOM 22 P C A 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 23 OP1 C A 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 24 OP2 C A 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 25 O5' C A 26 46.141 119.827 41.035 1.00 34.98 O
TER
ATOM 1 O3' U B 25 46.652 120.335 43.446 1.00 35.70 O
ATOM 2 P C B 26 47.342 120.210 42.004 1.00 36.01 P
ATOM 3 OP1 C B 26 48.306 119.080 42.055 1.00 35.53 O
ATOM 4 OP2 C B 26 47.810 121.559 41.606 1.00 37.21 O
ATOM 5 O5' C B 26 46.141 119.827 41.035 1.00 34.98 O
ATOM 6 C5' C B 26 45.422 118.603 41.198 1.00 34.69 C
ATOM 7 C4' C B 26 44.288 118.539 40.210 1.00 38.05 C
ATOM 8 O4' C B 26 43.350 119.616 40.471 1.00 38.96 O
ATOM 9 C3' C B 26 44.656 118.742 38.749 1.00 38.61 C
ATOM 10 O3' C B 26 45.152 117.553 38.161 1.00 40.82 O
ATOM 11 C2' C B 26 43.316 119.140 38.160 1.00 39.12 C
ATOM 12 O2' C B 26 42.440 118.037 38.113 1.00 40.65 O
ATOM 13 C1' C B 26 42.794 120.069 39.247 1.00 39.11 C
ATOM 14 N1 C B 26 43.205 121.466 39.036 1.00 40.44 N
ATOM 15 C2 C B 26 42.404 122.289 38.241 1.00 41.73 C
ATOM 16 O2 C B 26 41.409 121.803 37.682 1.00 43.19 O
ATOM 17 N3 C B 26 42.735 123.593 38.097 1.00 40.98 N
ATOM 18 C4 C B 26 43.818 124.075 38.702 1.00 39.77 C
ATOM 19 N4 C B 26 44.081 125.369 38.569 1.00 39.11 N
ATOM 20 C5 C B 26 44.674 123.250 39.480 1.00 41.13 C
ATOM 21 C6 C B 26 44.336 121.964 39.620 1.00 40.84 C
ATOM 22 P A B 27 46.138 117.645 36.897 1.00 43.59 P
ATOM 23 OP1 A B 27 46.466 116.251 36.510 1.00 43.23 O
ATOM 24 OP2 A B 27 47.235 118.594 37.203 1.00 43.80 O
ATOM 25 O5' A B 27 45.229 118.284 35.757 1.00 43.73 O
TER
Atoms:
C4: (43.498,126.026,41.980)
N3: (42.647,124.982,41.710)
OP1: (49.158,123.780,46.673)
OP2: (48.179,125.694,45.300)
C2: (42.621,123.754,42.322)
C1': (43.622,122.257,43.973)
C3': (45.806,121.436,43.720)
O5': (47.008,123.505,45.413)
O4': (44.292,122.388,45.218)
C5': (46.592,122.265,46.025)
P: (47.979,124.518,46.171)
C4': (45.512,121.595,45.200)
C2': (44.413,121.254,43.139)
O2': (43.886,119.962,43.350)
N1: (43.575,123.569,43.311)
O4: (43.393,127.073,41.340)
O2: (41.813,122.899,42.011)
C6: (44.449,124.576,43.640)
C5: (44.444,125.766,43.026)
O3': (46.652,120.335,43.446)
N3: (42.647,124.982,41.710)
OP1: (49.158,123.780,46.673)
OP2: (48.179,125.694,45.300)
C2: (42.621,123.754,42.322)
C1': (43.622,122.257,43.973)
C3': (45.806,121.436,43.720)
O5': (47.008,123.505,45.413)
O4': (44.292,122.388,45.218)
C5': (46.592,122.265,46.025)
P: (47.979,124.518,46.171)
C4': (45.512,121.595,45.200)
C2': (44.413,121.254,43.139)
O2': (43.886,119.962,43.350)
N1: (43.575,123.569,43.311)
O4: (43.393,127.073,41.340)
O2: (41.813,122.899,42.011)
C6: (44.449,124.576,43.640)
C5: (44.444,125.766,43.026)
O3': (46.652,120.335,43.446)
C2: (42.404,122.289,38.241)
OP1: (48.306,119.080,42.055)
OP2: (47.810,121.559,41.606)
C4: (43.818,124.075,38.702)
O5': (46.141,119.827,41.035)
C3': (44.656,118.742,38.749)
C1': (42.794,120.069,39.247)
O4': (43.350,119.616,40.471)
C5': (45.422,118.603,41.198)
P: (47.342,120.210,42.004)
O2: (41.409,121.803,37.682)
C4': (44.288,118.539,40.210)
C2': (43.316,119.140,38.160)
O2': (42.440,118.037,38.113)
N1: (43.205,121.466,39.036)
N3: (42.735,123.593,38.097)
N4: (44.081,125.369,38.569)
C6: (44.336,121.964,39.620)
C5: (44.674,123.250,39.480)
O3': (45.152,117.553,38.161)
OP1: (48.306,119.080,42.055)
OP2: (47.810,121.559,41.606)
C4: (43.818,124.075,38.702)
O5': (46.141,119.827,41.035)
C3': (44.656,118.742,38.749)
C1': (42.794,120.069,39.247)
O4': (43.350,119.616,40.471)
C5': (45.422,118.603,41.198)
P: (47.342,120.210,42.004)
O2: (41.409,121.803,37.682)
C4': (44.288,118.539,40.210)
C2': (43.316,119.140,38.160)
O2': (42.440,118.037,38.113)
N1: (43.205,121.466,39.036)
N3: (42.735,123.593,38.097)
N4: (44.081,125.369,38.569)
C6: (44.336,121.964,39.620)
C5: (44.674,123.250,39.480)
O3': (45.152,117.553,38.161)
Image (generated by PyMOL):