Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0663:0664
Extra
PDB:
ATOM 1 O3' A A 662 37.302 112.083 33.060 1.00 59.08 O
ATOM 2 P U A 663 36.680 110.631 32.803 1.00 59.52 P
ATOM 3 OP1 U A 663 37.519 109.684 33.580 1.00 59.88 O
ATOM 4 OP2 U A 663 36.545 110.452 31.331 1.00 60.98 O
ATOM 5 O5' U A 663 35.230 110.708 33.457 1.00 54.58 O
ATOM 6 C5' U A 663 35.080 110.731 34.873 1.00 52.14 C
ATOM 7 C4' U A 663 33.643 110.967 35.235 1.00 52.17 C
ATOM 8 O4' U A 663 33.190 112.160 34.559 1.00 53.15 O
ATOM 9 C3' U A 663 32.662 109.906 34.777 1.00 51.51 C
ATOM 10 O3' U A 663 32.591 108.836 35.688 1.00 50.81 O
ATOM 11 C2' U A 663 31.358 110.679 34.759 1.00 53.75 C
ATOM 12 O2' U A 663 30.814 110.889 36.051 1.00 54.35 O
ATOM 13 C1' U A 663 31.831 112.012 34.188 1.00 54.45 C
ATOM 14 N1 U A 663 31.748 112.039 32.720 1.00 56.32 N
ATOM 15 C2 U A 663 30.517 112.327 32.150 1.00 56.45 C
ATOM 16 O2 U A 663 29.507 112.531 32.808 1.00 55.40 O
ATOM 17 N3 U A 663 30.511 112.364 30.778 1.00 57.73 N
ATOM 18 C4 U A 663 31.581 112.147 29.934 1.00 57.99 C
ATOM 19 O4 U A 663 31.428 112.291 28.722 1.00 59.05 O
ATOM 20 C5 U A 663 32.816 111.837 30.595 1.00 57.92 C
ATOM 21 C6 U A 663 32.857 111.794 31.930 1.00 57.09 C
ATOM 22 P C A 664 32.737 107.337 35.159 1.00 51.56 P
ATOM 23 OP1 C A 664 32.273 106.483 36.281 1.00 53.71 O
ATOM 24 OP2 C A 664 34.101 107.168 34.626 1.00 51.27 O
ATOM 25 O5' C A 664 31.704 107.228 33.945 1.00 52.68 O
TER
ATOM 1 O3' U B 663 32.591 108.836 35.688 1.00 50.81 O
ATOM 2 P C B 664 32.737 107.337 35.159 1.00 51.56 P
ATOM 3 OP1 C B 664 32.273 106.483 36.281 1.00 53.71 O
ATOM 4 OP2 C B 664 34.101 107.168 34.626 1.00 51.27 O
ATOM 5 O5' C B 664 31.704 107.228 33.945 1.00 52.68 O
ATOM 6 C5' C B 664 30.294 107.528 34.134 1.00 52.90 C
ATOM 7 C4' C B 664 29.585 107.656 32.798 1.00 51.48 C
ATOM 8 O4' C B 664 30.107 108.797 32.060 1.00 50.15 O
ATOM 9 C3' C B 664 29.741 106.477 31.847 1.00 51.63 C
ATOM 10 O3' C B 664 28.805 105.439 32.143 1.00 52.36 O
ATOM 11 C2' C B 664 29.469 107.126 30.496 1.00 52.04 C
ATOM 12 O2' C B 664 28.091 107.316 30.239 1.00 50.29 O
ATOM 13 C1' C B 664 30.151 108.486 30.677 1.00 51.57 C
ATOM 14 N1 C B 664 31.562 108.442 30.242 1.00 51.96 N
ATOM 15 C2 C B 664 31.858 108.696 28.901 1.00 52.21 C
ATOM 16 O2 C B 664 30.937 108.998 28.125 1.00 52.93 O
ATOM 17 N3 C B 664 33.139 108.611 28.482 1.00 51.69 N
ATOM 18 C4 C B 664 34.101 108.295 29.342 1.00 50.53 C
ATOM 19 N4 C B 664 35.341 108.203 28.877 1.00 51.41 N
ATOM 20 C5 C B 664 33.832 108.053 30.716 1.00 50.27 C
ATOM 21 C6 C B 664 32.564 108.138 31.121 1.00 50.47 C
ATOM 22 P C B 665 29.139 103.912 31.757 1.00 50.96 P
ATOM 23 OP1 C B 665 28.060 103.093 32.369 1.00 50.26 O
ATOM 24 OP2 C B 665 30.557 103.633 32.096 1.00 50.05 O
ATOM 25 O5' C B 665 29.005 103.870 30.166 1.00 53.09 O
TER
ATOM 2 P U A 663 36.680 110.631 32.803 1.00 59.52 P
ATOM 3 OP1 U A 663 37.519 109.684 33.580 1.00 59.88 O
ATOM 4 OP2 U A 663 36.545 110.452 31.331 1.00 60.98 O
ATOM 5 O5' U A 663 35.230 110.708 33.457 1.00 54.58 O
ATOM 6 C5' U A 663 35.080 110.731 34.873 1.00 52.14 C
ATOM 7 C4' U A 663 33.643 110.967 35.235 1.00 52.17 C
ATOM 8 O4' U A 663 33.190 112.160 34.559 1.00 53.15 O
ATOM 9 C3' U A 663 32.662 109.906 34.777 1.00 51.51 C
ATOM 10 O3' U A 663 32.591 108.836 35.688 1.00 50.81 O
ATOM 11 C2' U A 663 31.358 110.679 34.759 1.00 53.75 C
ATOM 12 O2' U A 663 30.814 110.889 36.051 1.00 54.35 O
ATOM 13 C1' U A 663 31.831 112.012 34.188 1.00 54.45 C
ATOM 14 N1 U A 663 31.748 112.039 32.720 1.00 56.32 N
ATOM 15 C2 U A 663 30.517 112.327 32.150 1.00 56.45 C
ATOM 16 O2 U A 663 29.507 112.531 32.808 1.00 55.40 O
ATOM 17 N3 U A 663 30.511 112.364 30.778 1.00 57.73 N
ATOM 18 C4 U A 663 31.581 112.147 29.934 1.00 57.99 C
ATOM 19 O4 U A 663 31.428 112.291 28.722 1.00 59.05 O
ATOM 20 C5 U A 663 32.816 111.837 30.595 1.00 57.92 C
ATOM 21 C6 U A 663 32.857 111.794 31.930 1.00 57.09 C
ATOM 22 P C A 664 32.737 107.337 35.159 1.00 51.56 P
ATOM 23 OP1 C A 664 32.273 106.483 36.281 1.00 53.71 O
ATOM 24 OP2 C A 664 34.101 107.168 34.626 1.00 51.27 O
ATOM 25 O5' C A 664 31.704 107.228 33.945 1.00 52.68 O
TER
ATOM 1 O3' U B 663 32.591 108.836 35.688 1.00 50.81 O
ATOM 2 P C B 664 32.737 107.337 35.159 1.00 51.56 P
ATOM 3 OP1 C B 664 32.273 106.483 36.281 1.00 53.71 O
ATOM 4 OP2 C B 664 34.101 107.168 34.626 1.00 51.27 O
ATOM 5 O5' C B 664 31.704 107.228 33.945 1.00 52.68 O
ATOM 6 C5' C B 664 30.294 107.528 34.134 1.00 52.90 C
ATOM 7 C4' C B 664 29.585 107.656 32.798 1.00 51.48 C
ATOM 8 O4' C B 664 30.107 108.797 32.060 1.00 50.15 O
ATOM 9 C3' C B 664 29.741 106.477 31.847 1.00 51.63 C
ATOM 10 O3' C B 664 28.805 105.439 32.143 1.00 52.36 O
ATOM 11 C2' C B 664 29.469 107.126 30.496 1.00 52.04 C
ATOM 12 O2' C B 664 28.091 107.316 30.239 1.00 50.29 O
ATOM 13 C1' C B 664 30.151 108.486 30.677 1.00 51.57 C
ATOM 14 N1 C B 664 31.562 108.442 30.242 1.00 51.96 N
ATOM 15 C2 C B 664 31.858 108.696 28.901 1.00 52.21 C
ATOM 16 O2 C B 664 30.937 108.998 28.125 1.00 52.93 O
ATOM 17 N3 C B 664 33.139 108.611 28.482 1.00 51.69 N
ATOM 18 C4 C B 664 34.101 108.295 29.342 1.00 50.53 C
ATOM 19 N4 C B 664 35.341 108.203 28.877 1.00 51.41 N
ATOM 20 C5 C B 664 33.832 108.053 30.716 1.00 50.27 C
ATOM 21 C6 C B 664 32.564 108.138 31.121 1.00 50.47 C
ATOM 22 P C B 665 29.139 103.912 31.757 1.00 50.96 P
ATOM 23 OP1 C B 665 28.060 103.093 32.369 1.00 50.26 O
ATOM 24 OP2 C B 665 30.557 103.633 32.096 1.00 50.05 O
ATOM 25 O5' C B 665 29.005 103.870 30.166 1.00 53.09 O
TER
Atoms:
C4: (31.581,112.147,29.934)
N3: (30.511,112.364,30.778)
OP1: (37.519,109.684,33.580)
OP2: (36.545,110.452,31.331)
C2: (30.517,112.327,32.150)
C1': (31.831,112.012,34.188)
C3': (32.662,109.906,34.777)
O5': (35.230,110.708,33.457)
O4': (33.190,112.160,34.559)
C5': (35.080,110.731,34.873)
P: (36.680,110.631,32.803)
C4': (33.643,110.967,35.235)
C2': (31.358,110.679,34.759)
O2': (30.814,110.889,36.051)
N1: (31.748,112.039,32.720)
O4: (31.428,112.291,28.722)
O2: (29.507,112.531,32.808)
C6: (32.857,111.794,31.930)
C5: (32.816,111.837,30.595)
O3': (32.591,108.836,35.688)
N3: (30.511,112.364,30.778)
OP1: (37.519,109.684,33.580)
OP2: (36.545,110.452,31.331)
C2: (30.517,112.327,32.150)
C1': (31.831,112.012,34.188)
C3': (32.662,109.906,34.777)
O5': (35.230,110.708,33.457)
O4': (33.190,112.160,34.559)
C5': (35.080,110.731,34.873)
P: (36.680,110.631,32.803)
C4': (33.643,110.967,35.235)
C2': (31.358,110.679,34.759)
O2': (30.814,110.889,36.051)
N1: (31.748,112.039,32.720)
O4: (31.428,112.291,28.722)
O2: (29.507,112.531,32.808)
C6: (32.857,111.794,31.930)
C5: (32.816,111.837,30.595)
O3': (32.591,108.836,35.688)
C2: (31.858,108.696,28.901)
OP1: (32.273,106.483,36.281)
OP2: (34.101,107.168,34.626)
C4: (34.101,108.295,29.342)
O5': (31.704,107.228,33.945)
C3': (29.741,106.477,31.847)
C1': (30.151,108.486,30.677)
O4': (30.107,108.797,32.060)
C5': (30.294,107.528,34.134)
P: (32.737,107.337,35.159)
O2: (30.937,108.998,28.125)
C4': (29.585,107.656,32.798)
C2': (29.469,107.126,30.496)
O2': (28.091,107.316,30.239)
N1: (31.562,108.442,30.242)
N3: (33.139,108.611,28.482)
N4: (35.341,108.203,28.877)
C6: (32.564,108.138,31.121)
C5: (33.832,108.053,30.716)
O3': (28.805,105.439,32.143)
OP1: (32.273,106.483,36.281)
OP2: (34.101,107.168,34.626)
C4: (34.101,108.295,29.342)
O5': (31.704,107.228,33.945)
C3': (29.741,106.477,31.847)
C1': (30.151,108.486,30.677)
O4': (30.107,108.797,32.060)
C5': (30.294,107.528,34.134)
P: (32.737,107.337,35.159)
O2: (30.937,108.998,28.125)
C4': (29.585,107.656,32.798)
C2': (29.469,107.126,30.496)
O2': (28.091,107.316,30.239)
N1: (31.562,108.442,30.242)
N3: (33.139,108.611,28.482)
N4: (35.341,108.203,28.877)
C6: (32.564,108.138,31.121)
C5: (33.832,108.053,30.716)
O3': (28.805,105.439,32.143)
Image (generated by PyMOL):