Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:9112:964
Extra
PDB:
ATOM 1 O3' U A 111 49.708 34.062 113.696 1.00 57.02 O
ATOM 2 P C A 112 50.126 32.571 114.102 1.00 56.53 P
ATOM 3 OP1 C A 112 50.029 31.754 112.870 1.00 56.67 O
ATOM 4 OP2 C A 112 49.348 32.183 115.305 1.00 58.36 O
ATOM 5 O5' C A 112 51.658 32.687 114.515 1.00 53.97 O
ATOM 6 C5' C A 112 52.623 33.186 113.583 1.00 52.95 C
ATOM 7 C4' C A 112 53.909 32.403 113.677 1.00 51.65 C
ATOM 8 O4' C A 112 54.703 32.862 114.805 1.00 52.82 O
ATOM 9 C3' C A 112 53.760 30.897 113.849 1.00 52.04 C
ATOM 10 O3' C A 112 54.720 30.254 113.039 1.00 52.52 O
ATOM 11 C2' C A 112 54.126 30.687 115.315 1.00 52.15 C
ATOM 12 O2' C A 112 54.642 29.399 115.588 1.00 53.48 O
ATOM 13 C1' C A 112 55.214 31.741 115.484 1.00 51.55 C
ATOM 14 N1 C A 112 55.578 32.124 116.865 1.00 50.34 N
ATOM 15 C2 C A 112 56.848 32.695 117.093 1.00 49.70 C
ATOM 16 O2 C A 112 57.609 32.893 116.126 1.00 47.44 O
ATOM 17 N3 C A 112 57.212 33.014 118.361 1.00 49.52 N
ATOM 18 C4 C A 112 56.373 32.785 119.376 1.00 47.88 C
ATOM 19 N4 C A 112 56.783 33.100 120.604 1.00 46.57 N
ATOM 20 C5 C A 112 55.076 32.222 119.174 1.00 47.94 C
ATOM 21 C6 C A 112 54.720 31.915 117.915 1.00 49.87 C
ATOM 22 P G A 113 54.240 29.480 111.724 1.00 55.95 P
ATOM 23 OP1 G A 113 53.250 28.444 112.122 1.00 56.10 O
ATOM 24 OP2 G A 113 55.450 29.089 110.949 1.00 55.72 O
ATOM 25 O5' G A 113 53.453 30.598 110.913 1.00 55.83 O
TER
ATOM 1 O3' C B 63 53.206 30.175 125.002 1.00 63.66 O
ATOM 2 P A B 64 52.426 31.571 124.834 1.00 66.67 P
ATOM 3 OP1 A B 64 52.003 32.025 126.188 1.00 65.91 O
ATOM 4 OP2 A B 64 51.408 31.414 123.760 1.00 65.19 O
ATOM 5 O5' A B 64 53.543 32.578 124.310 1.00 67.92 O
ATOM 6 C5' A B 64 54.815 32.710 124.980 1.00 70.61 C
ATOM 7 C4' A B 64 55.482 33.999 124.560 1.00 72.01 C
ATOM 8 O4' A B 64 55.621 34.001 123.120 1.00 72.37 O
ATOM 9 C3' A B 64 54.696 35.253 124.912 1.00 72.06 C
ATOM 10 O3' A B 64 55.060 35.593 126.273 1.00 72.52 O
ATOM 11 C2' A B 64 55.021 36.223 123.772 1.00 72.21 C
ATOM 12 O2' A B 64 56.218 36.948 123.965 1.00 76.74 O
ATOM 13 C1' A B 64 55.260 35.263 122.600 1.00 71.36 C
ATOM 14 N9 A B 64 54.230 35.042 121.582 1.00 68.94 N
ATOM 15 C8 A B 64 52.999 34.447 121.705 1.00 67.68 C
ATOM 16 N7 A B 64 52.379 34.274 120.561 1.00 65.79 N
ATOM 17 C5 A B 64 53.246 34.821 119.626 1.00 66.53 C
ATOM 18 C6 A B 64 53.187 34.932 118.222 1.00 65.70 C
ATOM 19 N6 A B 64 52.185 34.460 117.479 1.00 65.93 N
ATOM 20 N1 A B 64 54.215 35.543 117.597 1.00 65.06 N
ATOM 21 C2 A B 64 55.232 35.996 118.332 1.00 64.42 C
ATOM 22 N3 A B 64 55.412 35.938 119.646 1.00 66.56 N
ATOM 23 C4 A B 64 54.372 35.330 120.244 1.00 67.73 C
ATOM 24 P G B 65 55.429 37.107 126.704 1.00 71.83 P
ATOM 25 OP1 G B 65 55.177 37.177 128.167 1.00 71.63 O
ATOM 26 OP2 G B 65 54.760 38.087 125.806 1.00 73.68 O
ATOM 27 O5' G B 65 57.009 37.199 126.507 1.00 68.48 O
TER
ATOM 2 P C A 112 50.126 32.571 114.102 1.00 56.53 P
ATOM 3 OP1 C A 112 50.029 31.754 112.870 1.00 56.67 O
ATOM 4 OP2 C A 112 49.348 32.183 115.305 1.00 58.36 O
ATOM 5 O5' C A 112 51.658 32.687 114.515 1.00 53.97 O
ATOM 6 C5' C A 112 52.623 33.186 113.583 1.00 52.95 C
ATOM 7 C4' C A 112 53.909 32.403 113.677 1.00 51.65 C
ATOM 8 O4' C A 112 54.703 32.862 114.805 1.00 52.82 O
ATOM 9 C3' C A 112 53.760 30.897 113.849 1.00 52.04 C
ATOM 10 O3' C A 112 54.720 30.254 113.039 1.00 52.52 O
ATOM 11 C2' C A 112 54.126 30.687 115.315 1.00 52.15 C
ATOM 12 O2' C A 112 54.642 29.399 115.588 1.00 53.48 O
ATOM 13 C1' C A 112 55.214 31.741 115.484 1.00 51.55 C
ATOM 14 N1 C A 112 55.578 32.124 116.865 1.00 50.34 N
ATOM 15 C2 C A 112 56.848 32.695 117.093 1.00 49.70 C
ATOM 16 O2 C A 112 57.609 32.893 116.126 1.00 47.44 O
ATOM 17 N3 C A 112 57.212 33.014 118.361 1.00 49.52 N
ATOM 18 C4 C A 112 56.373 32.785 119.376 1.00 47.88 C
ATOM 19 N4 C A 112 56.783 33.100 120.604 1.00 46.57 N
ATOM 20 C5 C A 112 55.076 32.222 119.174 1.00 47.94 C
ATOM 21 C6 C A 112 54.720 31.915 117.915 1.00 49.87 C
ATOM 22 P G A 113 54.240 29.480 111.724 1.00 55.95 P
ATOM 23 OP1 G A 113 53.250 28.444 112.122 1.00 56.10 O
ATOM 24 OP2 G A 113 55.450 29.089 110.949 1.00 55.72 O
ATOM 25 O5' G A 113 53.453 30.598 110.913 1.00 55.83 O
TER
ATOM 1 O3' C B 63 53.206 30.175 125.002 1.00 63.66 O
ATOM 2 P A B 64 52.426 31.571 124.834 1.00 66.67 P
ATOM 3 OP1 A B 64 52.003 32.025 126.188 1.00 65.91 O
ATOM 4 OP2 A B 64 51.408 31.414 123.760 1.00 65.19 O
ATOM 5 O5' A B 64 53.543 32.578 124.310 1.00 67.92 O
ATOM 6 C5' A B 64 54.815 32.710 124.980 1.00 70.61 C
ATOM 7 C4' A B 64 55.482 33.999 124.560 1.00 72.01 C
ATOM 8 O4' A B 64 55.621 34.001 123.120 1.00 72.37 O
ATOM 9 C3' A B 64 54.696 35.253 124.912 1.00 72.06 C
ATOM 10 O3' A B 64 55.060 35.593 126.273 1.00 72.52 O
ATOM 11 C2' A B 64 55.021 36.223 123.772 1.00 72.21 C
ATOM 12 O2' A B 64 56.218 36.948 123.965 1.00 76.74 O
ATOM 13 C1' A B 64 55.260 35.263 122.600 1.00 71.36 C
ATOM 14 N9 A B 64 54.230 35.042 121.582 1.00 68.94 N
ATOM 15 C8 A B 64 52.999 34.447 121.705 1.00 67.68 C
ATOM 16 N7 A B 64 52.379 34.274 120.561 1.00 65.79 N
ATOM 17 C5 A B 64 53.246 34.821 119.626 1.00 66.53 C
ATOM 18 C6 A B 64 53.187 34.932 118.222 1.00 65.70 C
ATOM 19 N6 A B 64 52.185 34.460 117.479 1.00 65.93 N
ATOM 20 N1 A B 64 54.215 35.543 117.597 1.00 65.06 N
ATOM 21 C2 A B 64 55.232 35.996 118.332 1.00 64.42 C
ATOM 22 N3 A B 64 55.412 35.938 119.646 1.00 66.56 N
ATOM 23 C4 A B 64 54.372 35.330 120.244 1.00 67.73 C
ATOM 24 P G B 65 55.429 37.107 126.704 1.00 71.83 P
ATOM 25 OP1 G B 65 55.177 37.177 128.167 1.00 71.63 O
ATOM 26 OP2 G B 65 54.760 38.087 125.806 1.00 73.68 O
ATOM 27 O5' G B 65 57.009 37.199 126.507 1.00 68.48 O
TER
Atoms:
C2: (56.848,32.695,117.093)
OP1: (50.029,31.754,112.870)
OP2: (49.348,32.183,115.305)
C4: (56.373,32.785,119.376)
O5': (51.658,32.687,114.515)
C3': (53.760,30.897,113.849)
C1': (55.214,31.741,115.484)
O4': (54.703,32.862,114.805)
C5': (52.623,33.186,113.583)
P: (50.126,32.571,114.102)
O2: (57.609,32.893,116.126)
C4': (53.909,32.403,113.677)
C2': (54.126,30.687,115.315)
O2': (54.642,29.399,115.588)
N1: (55.578,32.124,116.865)
N3: (57.212,33.014,118.361)
N4: (56.783,33.100,120.604)
C6: (54.720,31.915,117.915)
C5: (55.076,32.222,119.174)
O3': (54.720,30.254,113.039)
OP1: (50.029,31.754,112.870)
OP2: (49.348,32.183,115.305)
C4: (56.373,32.785,119.376)
O5': (51.658,32.687,114.515)
C3': (53.760,30.897,113.849)
C1': (55.214,31.741,115.484)
O4': (54.703,32.862,114.805)
C5': (52.623,33.186,113.583)
P: (50.126,32.571,114.102)
O2: (57.609,32.893,116.126)
C4': (53.909,32.403,113.677)
C2': (54.126,30.687,115.315)
O2': (54.642,29.399,115.588)
N1: (55.578,32.124,116.865)
N3: (57.212,33.014,118.361)
N4: (56.783,33.100,120.604)
C6: (54.720,31.915,117.915)
C5: (55.076,32.222,119.174)
O3': (54.720,30.254,113.039)
OP1: (52.003,32.025,126.188)
OP2: (51.408,31.414,123.760)
C3': (54.696,35.253,124.912)
C1': (55.260,35.263,122.600)
C5': (54.815,32.710,124.980)
O4': (55.621,34.001,123.120)
C8: (52.999,34.447,121.705)
O2': (56.218,36.948,123.965)
C6: (53.187,34.932,118.222)
C5: (53.246,34.821,119.626)
C4: (54.372,35.330,120.244)
P: (52.426,31.571,124.834)
C4': (55.482,33.999,124.560)
C2': (55.021,36.223,123.772)
C2: (55.232,35.996,118.332)
N1: (54.215,35.543,117.597)
N3: (55.412,35.938,119.646)
N6: (52.185,34.460,117.479)
N7: (52.379,34.274,120.561)
N9: (54.230,35.042,121.582)
O5': (53.543,32.578,124.310)
O3': (55.060,35.593,126.273)
OP2: (51.408,31.414,123.760)
C3': (54.696,35.253,124.912)
C1': (55.260,35.263,122.600)
C5': (54.815,32.710,124.980)
O4': (55.621,34.001,123.120)
C8: (52.999,34.447,121.705)
O2': (56.218,36.948,123.965)
C6: (53.187,34.932,118.222)
C5: (53.246,34.821,119.626)
C4: (54.372,35.330,120.244)
P: (52.426,31.571,124.834)
C4': (55.482,33.999,124.560)
C2': (55.021,36.223,123.772)
C2: (55.232,35.996,118.332)
N1: (54.215,35.543,117.597)
N3: (55.412,35.938,119.646)
N6: (52.185,34.460,117.479)
N7: (52.379,34.274,120.561)
N9: (54.230,35.042,121.582)
O5': (53.543,32.578,124.310)
O3': (55.060,35.593,126.273)
Image (generated by PyMOL):