Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11239:11238
Extra
PDB:
ATOM 1 O3' A A1238 32.333 -8.526 6.789 1.00 51.59 O
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' U B1237 26.742 -11.142 4.958 1.00 60.61 O
ATOM 2 P A B1238 26.850 -10.407 6.379 1.00 52.35 P
ATOM 3 OP1 A B1238 26.708 -11.463 7.426 1.00 51.99 O
ATOM 4 OP2 A B1238 25.867 -9.247 6.351 1.00 52.45 O
ATOM 5 O5' A B1238 28.340 -9.851 6.376 1.00 52.17 O
ATOM 6 C5' A B1238 29.425 -10.616 5.889 1.00 52.26 C
ATOM 7 C4' A B1238 30.598 -9.730 5.630 1.00 52.22 C
ATOM 8 O4' A B1238 30.304 -8.882 4.478 1.00 52.68 O
ATOM 9 C3' A B1238 30.924 -8.770 6.780 1.00 51.73 C
ATOM 10 O3' A B1238 32.333 -8.526 6.789 1.00 51.59 O
ATOM 11 C2' A B1238 30.217 -7.504 6.339 1.00 51.95 C
ATOM 12 O2' A B1238 30.688 -6.333 6.951 1.00 51.66 O
ATOM 13 C1' A B1238 30.525 -7.543 4.852 1.00 52.49 C
ATOM 14 N9 A B1238 29.737 -6.602 4.022 1.00 52.90 N
ATOM 15 C8 A B1238 28.396 -6.327 4.001 1.00 53.05 C
ATOM 16 N7 A B1238 28.049 -5.315 3.208 1.00 53.41 N
ATOM 17 C5 A B1238 29.248 -4.850 2.692 1.00 53.49 C
ATOM 18 C6 A B1238 29.573 -3.792 1.811 1.00 53.82 C
ATOM 19 N6 A B1238 28.697 -2.953 1.251 1.00 54.16 N
ATOM 20 N1 A B1238 30.874 -3.605 1.531 1.00 53.80 N
ATOM 21 C2 A B1238 31.760 -4.404 2.091 1.00 53.47 C
ATOM 22 N3 A B1238 31.565 -5.402 2.909 1.00 53.16 N
ATOM 23 C4 A B1238 30.281 -5.617 3.184 1.00 53.17 C
ATOM 24 P G B1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 25 OP1 G B1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 26 OP2 G B1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 27 O5' G B1239 34.279 -7.361 7.787 1.00 47.29 O
TER
ATOM 2 P G A1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 3 OP1 G A1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 4 OP2 G A1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 5 O5' G A1239 34.279 -7.361 7.787 1.00 47.29 O
ATOM 6 C5' G A1239 34.043 -5.981 8.034 1.00 47.21 C
ATOM 7 C4' G A1239 34.976 -5.092 7.242 1.00 47.43 C
ATOM 8 O4' G A1239 34.476 -4.954 5.873 1.00 47.99 O
ATOM 9 C3' G A1239 35.119 -3.652 7.739 1.00 47.25 C
ATOM 10 O3' G A1239 36.047 -3.512 8.796 1.00 46.79 O
ATOM 11 C2' G A1239 35.530 -2.901 6.488 1.00 47.69 C
ATOM 12 O2' G A1239 36.900 -3.084 6.255 1.00 47.67 O
ATOM 13 C1' G A1239 34.771 -3.652 5.392 1.00 48.16 C
ATOM 14 N9 G A1239 33.508 -2.972 4.996 1.00 48.43 N
ATOM 15 C8 G A1239 32.208 -3.397 5.120 1.00 48.49 C
ATOM 16 N7 G A1239 31.346 -2.563 4.621 1.00 48.79 N
ATOM 17 C5 G A1239 32.089 -1.519 4.135 1.00 48.93 C
ATOM 18 C6 G A1239 31.733 -0.303 3.468 1.00 49.27 C
ATOM 19 O6 G A1239 30.669 0.187 3.115 1.00 49.53 O
ATOM 20 N1 G A1239 32.835 0.457 3.162 1.00 49.31 N
ATOM 21 C2 G A1239 34.127 0.119 3.417 1.00 49.08 C
ATOM 22 N2 G A1239 35.021 1.027 2.989 1.00 49.21 N
ATOM 23 N3 G A1239 34.478 -1.004 4.026 1.00 48.77 N
ATOM 24 C4 G A1239 33.426 -1.765 4.357 1.00 48.71 C
ATOM 25 P C A1240 35.578 -2.932 10.243 1.00 44.04 P
ATOM 26 OP1 C A1240 36.544 -3.428 11.253 1.00 43.60 O
ATOM 27 OP2 C A1240 34.141 -3.257 10.416 1.00 44.08 O
ATOM 28 O5' C A1240 35.747 -1.361 10.081 1.00 44.12 O
TER
ATOM 1 O3' U B1237 26.742 -11.142 4.958 1.00 60.61 O
ATOM 2 P A B1238 26.850 -10.407 6.379 1.00 52.35 P
ATOM 3 OP1 A B1238 26.708 -11.463 7.426 1.00 51.99 O
ATOM 4 OP2 A B1238 25.867 -9.247 6.351 1.00 52.45 O
ATOM 5 O5' A B1238 28.340 -9.851 6.376 1.00 52.17 O
ATOM 6 C5' A B1238 29.425 -10.616 5.889 1.00 52.26 C
ATOM 7 C4' A B1238 30.598 -9.730 5.630 1.00 52.22 C
ATOM 8 O4' A B1238 30.304 -8.882 4.478 1.00 52.68 O
ATOM 9 C3' A B1238 30.924 -8.770 6.780 1.00 51.73 C
ATOM 10 O3' A B1238 32.333 -8.526 6.789 1.00 51.59 O
ATOM 11 C2' A B1238 30.217 -7.504 6.339 1.00 51.95 C
ATOM 12 O2' A B1238 30.688 -6.333 6.951 1.00 51.66 O
ATOM 13 C1' A B1238 30.525 -7.543 4.852 1.00 52.49 C
ATOM 14 N9 A B1238 29.737 -6.602 4.022 1.00 52.90 N
ATOM 15 C8 A B1238 28.396 -6.327 4.001 1.00 53.05 C
ATOM 16 N7 A B1238 28.049 -5.315 3.208 1.00 53.41 N
ATOM 17 C5 A B1238 29.248 -4.850 2.692 1.00 53.49 C
ATOM 18 C6 A B1238 29.573 -3.792 1.811 1.00 53.82 C
ATOM 19 N6 A B1238 28.697 -2.953 1.251 1.00 54.16 N
ATOM 20 N1 A B1238 30.874 -3.605 1.531 1.00 53.80 N
ATOM 21 C2 A B1238 31.760 -4.404 2.091 1.00 53.47 C
ATOM 22 N3 A B1238 31.565 -5.402 2.909 1.00 53.16 N
ATOM 23 C4 A B1238 30.281 -5.617 3.184 1.00 53.17 C
ATOM 24 P G B1239 33.193 -8.461 8.159 1.00 47.25 P
ATOM 25 OP1 G B1239 33.832 -9.770 8.321 1.00 47.16 O
ATOM 26 OP2 G B1239 32.302 -7.963 9.246 1.00 46.92 O
ATOM 27 O5' G B1239 34.279 -7.361 7.787 1.00 47.29 O
TER
Atoms:
OP1: (33.832,-9.770,8.321)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
OP2: (32.302,-7.963,9.246)
C3': (35.119,-3.652,7.739)
C1': (34.771,-3.652,5.392)
C5': (34.043,-5.981,8.034)
O6: (30.669,0.187,3.115)
O4': (34.476,-4.954,5.873)
C8: (32.208,-3.397,5.120)
C2: (34.127,0.119,3.417)
C6: (31.733,-0.303,3.468)
C5: (32.089,-1.519,4.135)
C4: (33.426,-1.765,4.357)
P: (33.193,-8.461,8.159)
C4': (34.976,-5.092,7.242)
C2': (35.530,-2.901,6.488)
O2': (36.900,-3.084,6.255)
N1: (32.835,0.457,3.162)
N2: (35.021,1.027,2.989)
N3: (34.478,-1.004,4.026)
N7: (31.346,-2.563,4.621)
N9: (33.508,-2.972,4.996)
O5': (34.279,-7.361,7.787)
O3': (36.047,-3.512,8.796)
OP1: (26.708,-11.463,7.426)
OP2: (25.867,-9.247,6.351)
C3': (30.924,-8.770,6.780)
C1': (30.525,-7.543,4.852)
C5': (29.425,-10.616,5.889)
O4': (30.304,-8.882,4.478)
C8: (28.396,-6.327,4.001)
O2': (30.688,-6.333,6.951)
C6: (29.573,-3.792,1.811)
C5: (29.248,-4.850,2.692)
C4: (30.281,-5.617,3.184)
P: (26.850,-10.407,6.379)
C4': (30.598,-9.730,5.630)
C2': (30.217,-7.504,6.339)
C2: (31.760,-4.404,2.091)
N1: (30.874,-3.605,1.531)
N3: (31.565,-5.402,2.909)
N6: (28.697,-2.953,1.251)
N7: (28.049,-5.315,3.208)
N9: (29.737,-6.602,4.022)
O5': (28.340,-9.851,6.376)
O3': (32.333,-8.526,6.789)
OP2: (25.867,-9.247,6.351)
C3': (30.924,-8.770,6.780)
C1': (30.525,-7.543,4.852)
C5': (29.425,-10.616,5.889)
O4': (30.304,-8.882,4.478)
C8: (28.396,-6.327,4.001)
O2': (30.688,-6.333,6.951)
C6: (29.573,-3.792,1.811)
C5: (29.248,-4.850,2.692)
C4: (30.281,-5.617,3.184)
P: (26.850,-10.407,6.379)
C4': (30.598,-9.730,5.630)
C2': (30.217,-7.504,6.339)
C2: (31.760,-4.404,2.091)
N1: (30.874,-3.605,1.531)
N3: (31.565,-5.402,2.909)
N6: (28.697,-2.953,1.251)
N7: (28.049,-5.315,3.208)
N9: (29.737,-6.602,4.022)
O5': (28.340,-9.851,6.376)
O3': (32.333,-8.526,6.789)
Image (generated by PyMOL):