Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0265:0266
Extra
PDB:
ATOM 1 O3' C A 264 89.450 102.184 -10.325 1.00 68.85 O
ATOM 2 P U A 265 88.636 102.165 -11.715 1.00 72.21 P
ATOM 3 OP1 U A 265 89.340 103.095 -12.638 1.00 72.01 O
ATOM 4 OP2 U A 265 87.189 102.367 -11.449 1.00 70.77 O
ATOM 5 O5' U A 265 88.842 100.670 -12.236 1.00 73.97 O
ATOM 6 C5' U A 265 90.149 100.195 -12.639 1.00 77.27 C
ATOM 7 C4' U A 265 90.070 98.757 -13.102 1.00 80.47 C
ATOM 8 O4' U A 265 89.824 97.880 -11.967 1.00 81.30 O
ATOM 9 C3' U A 265 88.931 98.440 -14.056 1.00 82.40 C
ATOM 10 O3' U A 265 89.179 98.831 -15.399 1.00 83.84 O
ATOM 11 C2' U A 265 88.770 96.935 -13.877 1.00 82.19 C
ATOM 12 O2' U A 265 89.742 96.177 -14.571 1.00 82.26 O
ATOM 13 C1' U A 265 88.986 96.799 -12.368 1.00 81.58 C
ATOM 14 N1 U A 265 87.719 96.878 -11.618 1.00 81.00 N
ATOM 15 C2 U A 265 87.114 95.689 -11.230 1.00 80.55 C
ATOM 16 O2 U A 265 87.583 94.589 -11.473 1.00 80.17 O
ATOM 17 N3 U A 265 85.932 95.838 -10.546 1.00 80.23 N
ATOM 18 C4 U A 265 85.301 97.023 -10.217 1.00 79.80 C
ATOM 19 O4 U A 265 84.231 96.990 -9.609 1.00 78.52 O
ATOM 20 C5 U A 265 85.984 98.203 -10.649 1.00 79.76 C
ATOM 21 C6 U A 265 87.138 98.096 -11.315 1.00 80.33 C
ATOM 22 P A A 266 87.935 99.060 -16.391 1.00 86.37 P
ATOM 23 OP1 A A 266 88.486 99.345 -17.740 1.00 86.09 O
ATOM 24 OP2 A A 266 86.983 100.016 -15.773 1.00 85.99 O
ATOM 25 O5' A A 266 87.215 97.639 -16.417 1.00 88.40 O
TER
ATOM 1 O3' U B 265 89.179 98.831 -15.399 1.00 83.84 O
ATOM 2 P A B 266 87.935 99.060 -16.391 1.00 86.37 P
ATOM 3 OP1 A B 266 88.486 99.345 -17.740 1.00 86.09 O
ATOM 4 OP2 A B 266 86.983 100.016 -15.773 1.00 85.99 O
ATOM 5 O5' A B 266 87.215 97.639 -16.417 1.00 88.40 O
ATOM 6 C5' A B 266 87.804 96.519 -17.106 1.00 91.67 C
ATOM 7 C4' A B 266 86.786 95.419 -17.272 1.00 93.65 C
ATOM 8 O4' A B 266 86.549 94.768 -15.994 1.00 94.19 O
ATOM 9 C3' A B 266 85.408 95.893 -17.701 1.00 95.53 C
ATOM 10 O3' A B 266 85.323 96.176 -19.094 1.00 99.13 O
ATOM 11 C2' A B 266 84.517 94.752 -17.228 1.00 94.93 C
ATOM 12 O2' A B 266 84.543 93.628 -18.085 1.00 93.90 O
ATOM 13 C1' A B 266 85.176 94.409 -15.887 1.00 94.64 C
ATOM 14 N9 A B 266 84.585 95.168 -14.779 1.00 94.81 N
ATOM 15 C8 A B 266 84.936 96.423 -14.334 1.00 94.74 C
ATOM 16 N7 A B 266 84.197 96.859 -13.342 1.00 94.29 N
ATOM 17 C5 A B 266 83.304 95.821 -13.109 1.00 93.86 C
ATOM 18 C6 A B 266 82.254 95.666 -12.186 1.00 93.14 C
ATOM 19 N6 A B 266 81.902 96.598 -11.297 1.00 93.18 N
ATOM 20 N1 A B 266 81.563 94.508 -12.212 1.00 92.41 N
ATOM 21 C2 A B 266 81.906 93.577 -13.109 1.00 93.15 C
ATOM 22 N3 A B 266 82.865 93.606 -14.031 1.00 93.75 N
ATOM 23 C4 A B 266 83.537 94.769 -13.980 1.00 94.29 C
ATOM 24 P C B 267 84.057 96.990 -19.667 1.00102.08 P
ATOM 25 OP1 C B 267 84.410 97.461 -21.033 1.00102.03 O
ATOM 26 OP2 C B 267 83.594 97.975 -18.653 1.00101.72 O
ATOM 27 O5' C B 267 82.952 95.853 -19.804 1.00102.78 O
TER
ATOM 2 P U A 265 88.636 102.165 -11.715 1.00 72.21 P
ATOM 3 OP1 U A 265 89.340 103.095 -12.638 1.00 72.01 O
ATOM 4 OP2 U A 265 87.189 102.367 -11.449 1.00 70.77 O
ATOM 5 O5' U A 265 88.842 100.670 -12.236 1.00 73.97 O
ATOM 6 C5' U A 265 90.149 100.195 -12.639 1.00 77.27 C
ATOM 7 C4' U A 265 90.070 98.757 -13.102 1.00 80.47 C
ATOM 8 O4' U A 265 89.824 97.880 -11.967 1.00 81.30 O
ATOM 9 C3' U A 265 88.931 98.440 -14.056 1.00 82.40 C
ATOM 10 O3' U A 265 89.179 98.831 -15.399 1.00 83.84 O
ATOM 11 C2' U A 265 88.770 96.935 -13.877 1.00 82.19 C
ATOM 12 O2' U A 265 89.742 96.177 -14.571 1.00 82.26 O
ATOM 13 C1' U A 265 88.986 96.799 -12.368 1.00 81.58 C
ATOM 14 N1 U A 265 87.719 96.878 -11.618 1.00 81.00 N
ATOM 15 C2 U A 265 87.114 95.689 -11.230 1.00 80.55 C
ATOM 16 O2 U A 265 87.583 94.589 -11.473 1.00 80.17 O
ATOM 17 N3 U A 265 85.932 95.838 -10.546 1.00 80.23 N
ATOM 18 C4 U A 265 85.301 97.023 -10.217 1.00 79.80 C
ATOM 19 O4 U A 265 84.231 96.990 -9.609 1.00 78.52 O
ATOM 20 C5 U A 265 85.984 98.203 -10.649 1.00 79.76 C
ATOM 21 C6 U A 265 87.138 98.096 -11.315 1.00 80.33 C
ATOM 22 P A A 266 87.935 99.060 -16.391 1.00 86.37 P
ATOM 23 OP1 A A 266 88.486 99.345 -17.740 1.00 86.09 O
ATOM 24 OP2 A A 266 86.983 100.016 -15.773 1.00 85.99 O
ATOM 25 O5' A A 266 87.215 97.639 -16.417 1.00 88.40 O
TER
ATOM 1 O3' U B 265 89.179 98.831 -15.399 1.00 83.84 O
ATOM 2 P A B 266 87.935 99.060 -16.391 1.00 86.37 P
ATOM 3 OP1 A B 266 88.486 99.345 -17.740 1.00 86.09 O
ATOM 4 OP2 A B 266 86.983 100.016 -15.773 1.00 85.99 O
ATOM 5 O5' A B 266 87.215 97.639 -16.417 1.00 88.40 O
ATOM 6 C5' A B 266 87.804 96.519 -17.106 1.00 91.67 C
ATOM 7 C4' A B 266 86.786 95.419 -17.272 1.00 93.65 C
ATOM 8 O4' A B 266 86.549 94.768 -15.994 1.00 94.19 O
ATOM 9 C3' A B 266 85.408 95.893 -17.701 1.00 95.53 C
ATOM 10 O3' A B 266 85.323 96.176 -19.094 1.00 99.13 O
ATOM 11 C2' A B 266 84.517 94.752 -17.228 1.00 94.93 C
ATOM 12 O2' A B 266 84.543 93.628 -18.085 1.00 93.90 O
ATOM 13 C1' A B 266 85.176 94.409 -15.887 1.00 94.64 C
ATOM 14 N9 A B 266 84.585 95.168 -14.779 1.00 94.81 N
ATOM 15 C8 A B 266 84.936 96.423 -14.334 1.00 94.74 C
ATOM 16 N7 A B 266 84.197 96.859 -13.342 1.00 94.29 N
ATOM 17 C5 A B 266 83.304 95.821 -13.109 1.00 93.86 C
ATOM 18 C6 A B 266 82.254 95.666 -12.186 1.00 93.14 C
ATOM 19 N6 A B 266 81.902 96.598 -11.297 1.00 93.18 N
ATOM 20 N1 A B 266 81.563 94.508 -12.212 1.00 92.41 N
ATOM 21 C2 A B 266 81.906 93.577 -13.109 1.00 93.15 C
ATOM 22 N3 A B 266 82.865 93.606 -14.031 1.00 93.75 N
ATOM 23 C4 A B 266 83.537 94.769 -13.980 1.00 94.29 C
ATOM 24 P C B 267 84.057 96.990 -19.667 1.00102.08 P
ATOM 25 OP1 C B 267 84.410 97.461 -21.033 1.00102.03 O
ATOM 26 OP2 C B 267 83.594 97.975 -18.653 1.00101.72 O
ATOM 27 O5' C B 267 82.952 95.853 -19.804 1.00102.78 O
TER
Atoms:
C4: (85.301,97.023,-10.217)
N3: (85.932,95.838,-10.546)
OP1: (89.340,103.095,-12.638)
OP2: (87.189,102.367,-11.449)
C2: (87.114,95.689,-11.230)
C1': (88.986,96.799,-12.368)
C3': (88.931,98.440,-14.056)
O5': (88.842,100.670,-12.236)
O4': (89.824,97.880,-11.967)
C5': (90.149,100.195,-12.639)
P: (88.636,102.165,-11.715)
C4': (90.070,98.757,-13.102)
C2': (88.770,96.935,-13.877)
O2': (89.742,96.177,-14.571)
N1: (87.719,96.878,-11.618)
O4: (84.231,96.990,-9.609)
O2: (87.583,94.589,-11.473)
C6: (87.138,98.096,-11.315)
C5: (85.984,98.203,-10.649)
O3': (89.179,98.831,-15.399)
N3: (85.932,95.838,-10.546)
OP1: (89.340,103.095,-12.638)
OP2: (87.189,102.367,-11.449)
C2: (87.114,95.689,-11.230)
C1': (88.986,96.799,-12.368)
C3': (88.931,98.440,-14.056)
O5': (88.842,100.670,-12.236)
O4': (89.824,97.880,-11.967)
C5': (90.149,100.195,-12.639)
P: (88.636,102.165,-11.715)
C4': (90.070,98.757,-13.102)
C2': (88.770,96.935,-13.877)
O2': (89.742,96.177,-14.571)
N1: (87.719,96.878,-11.618)
O4: (84.231,96.990,-9.609)
O2: (87.583,94.589,-11.473)
C6: (87.138,98.096,-11.315)
C5: (85.984,98.203,-10.649)
O3': (89.179,98.831,-15.399)
OP1: (88.486,99.345,-17.740)
OP2: (86.983,100.016,-15.773)
C3': (85.408,95.893,-17.701)
C1': (85.176,94.409,-15.887)
C5': (87.804,96.519,-17.106)
O4': (86.549,94.768,-15.994)
C8: (84.936,96.423,-14.334)
O2': (84.543,93.628,-18.085)
C6: (82.254,95.666,-12.186)
C5: (83.304,95.821,-13.109)
C4: (83.537,94.769,-13.980)
P: (87.935,99.060,-16.391)
C4': (86.786,95.419,-17.272)
C2': (84.517,94.752,-17.228)
C2: (81.906,93.577,-13.109)
N1: (81.563,94.508,-12.212)
N3: (82.865,93.606,-14.031)
N6: (81.902,96.598,-11.297)
N7: (84.197,96.859,-13.342)
N9: (84.585,95.168,-14.779)
O5': (87.215,97.639,-16.417)
O3': (85.323,96.176,-19.094)
OP2: (86.983,100.016,-15.773)
C3': (85.408,95.893,-17.701)
C1': (85.176,94.409,-15.887)
C5': (87.804,96.519,-17.106)
O4': (86.549,94.768,-15.994)
C8: (84.936,96.423,-14.334)
O2': (84.543,93.628,-18.085)
C6: (82.254,95.666,-12.186)
C5: (83.304,95.821,-13.109)
C4: (83.537,94.769,-13.980)
P: (87.935,99.060,-16.391)
C4': (86.786,95.419,-17.272)
C2': (84.517,94.752,-17.228)
C2: (81.906,93.577,-13.109)
N1: (81.563,94.508,-12.212)
N3: (82.865,93.606,-14.031)
N6: (81.902,96.598,-11.297)
N7: (84.197,96.859,-13.342)
N9: (84.585,95.168,-14.779)
O5': (87.215,97.639,-16.417)
O3': (85.323,96.176,-19.094)
Image (generated by PyMOL):