Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A1040:A1039
Extra
PDB:
ATOM 1 O3' A A1039 -126.960 78.119 170.491 1.00 90.94 O
ATOM 2 P G A1040 -125.596 78.454 169.691 1.00 85.66 P
ATOM 3 OP1 G A1040 -125.717 79.850 169.184 1.00 85.66 O
ATOM 4 OP2 G A1040 -125.383 77.351 168.709 1.00 85.66 O
ATOM 5 O5' G A1040 -124.481 78.391 170.832 1.00 85.66 O
ATOM 6 C5' G A1040 -123.183 78.947 170.620 1.00 85.66 C
ATOM 7 C4' G A1040 -122.149 78.292 171.499 1.00 85.66 C
ATOM 8 O4' G A1040 -122.653 78.258 172.859 1.00 85.66 O
ATOM 9 C3' G A1040 -121.812 76.850 171.133 1.00 85.66 C
ATOM 10 O3' G A1040 -120.442 76.570 171.444 1.00 85.66 O
ATOM 11 C2' G A1040 -122.734 76.048 172.045 1.00 85.66 C
ATOM 12 O2' G A1040 -122.297 74.736 172.330 1.00 85.66 O
ATOM 13 C1' G A1040 -122.780 76.920 173.298 1.00 85.66 C
ATOM 14 N9 G A1040 -124.035 76.811 174.036 1.00 84.82 N
ATOM 15 C8 G A1040 -125.288 77.046 173.527 1.00 84.82 C
ATOM 16 N7 G A1040 -126.225 76.860 174.404 1.00 84.82 N
ATOM 17 C5 G A1040 -125.547 76.484 175.557 1.00 84.82 C
ATOM 18 C6 G A1040 -126.034 76.145 176.846 1.00 84.82 C
ATOM 19 O6 G A1040 -127.206 76.124 177.241 1.00 84.82 O
ATOM 20 N1 G A1040 -125.012 75.825 177.733 1.00 84.82 N
ATOM 21 C2 G A1040 -123.683 75.819 177.428 1.00 84.82 C
ATOM 22 N2 G A1040 -122.867 75.481 178.433 1.00 84.82 N
ATOM 23 N3 G A1040 -123.209 76.124 176.229 1.00 84.82 N
ATOM 24 C4 G A1040 -124.190 76.445 175.349 1.00 84.82 C
ATOM 25 P A A1041 -119.327 76.539 170.270 1.00 71.12 P
ATOM 26 OP1 A A1041 -119.993 76.047 169.041 1.00 71.12 O
ATOM 27 OP2 A A1041 -118.143 75.787 170.796 1.00 71.12 O
ATOM 28 O5' A A1041 -118.954 78.076 170.096 1.00 71.12 O
TER
ATOM 1 O3' C B1038 -128.372 78.520 175.694 1.00 87.20 O
ATOM 2 P A B1039 -129.974 78.460 175.430 1.00 90.94 P
ATOM 3 OP1 A B1039 -130.618 79.340 176.449 1.00 90.94 O
ATOM 4 OP2 A B1039 -130.348 77.026 175.388 1.00 90.94 O
ATOM 5 O5' A B1039 -130.146 79.097 173.974 1.00 90.94 O
ATOM 6 C5' A B1039 -129.021 79.526 173.216 1.00 90.94 C
ATOM 7 C4' A B1039 -128.762 78.628 172.036 1.00 90.94 C
ATOM 8 O4' A B1039 -130.009 78.429 171.319 1.00 90.94 O
ATOM 9 C3' A B1039 -127.761 79.179 171.019 1.00 90.94 C
ATOM 10 O3' A B1039 -126.960 78.119 170.491 1.00 90.94 O
ATOM 11 C2' A B1039 -128.655 79.760 169.926 1.00 90.94 C
ATOM 12 O2' A B1039 -128.064 79.803 168.645 1.00 90.94 O
ATOM 13 C1' A B1039 -129.862 78.823 169.969 1.00 90.94 C
ATOM 14 N9 A B1039 -131.124 79.446 169.520 1.00 90.71 N
ATOM 15 C8 A B1039 -131.235 80.368 168.505 1.00 90.71 C
ATOM 16 N7 A B1039 -132.454 80.778 168.257 1.00 90.71 N
ATOM 17 C5 A B1039 -133.221 80.078 169.173 1.00 90.71 C
ATOM 18 C6 A B1039 -134.607 80.082 169.408 1.00 90.71 C
ATOM 19 N6 A B1039 -135.462 80.844 168.709 1.00 90.71 N
ATOM 20 N1 A B1039 -135.074 79.276 170.393 1.00 90.71 N
ATOM 21 C2 A B1039 -134.207 78.523 171.082 1.00 90.71 C
ATOM 22 N3 A B1039 -132.885 78.439 170.948 1.00 90.71 N
ATOM 23 C4 A B1039 -132.431 79.251 169.963 1.00 90.71 C
ATOM 24 P G B1040 -125.596 78.454 169.691 1.00 85.66 P
ATOM 25 OP1 G B1040 -125.717 79.850 169.184 1.00 85.66 O
ATOM 26 OP2 G B1040 -125.383 77.351 168.709 1.00 85.66 O
ATOM 27 O5' G B1040 -124.481 78.391 170.832 1.00 85.66 O
TER
ATOM 2 P G A1040 -125.596 78.454 169.691 1.00 85.66 P
ATOM 3 OP1 G A1040 -125.717 79.850 169.184 1.00 85.66 O
ATOM 4 OP2 G A1040 -125.383 77.351 168.709 1.00 85.66 O
ATOM 5 O5' G A1040 -124.481 78.391 170.832 1.00 85.66 O
ATOM 6 C5' G A1040 -123.183 78.947 170.620 1.00 85.66 C
ATOM 7 C4' G A1040 -122.149 78.292 171.499 1.00 85.66 C
ATOM 8 O4' G A1040 -122.653 78.258 172.859 1.00 85.66 O
ATOM 9 C3' G A1040 -121.812 76.850 171.133 1.00 85.66 C
ATOM 10 O3' G A1040 -120.442 76.570 171.444 1.00 85.66 O
ATOM 11 C2' G A1040 -122.734 76.048 172.045 1.00 85.66 C
ATOM 12 O2' G A1040 -122.297 74.736 172.330 1.00 85.66 O
ATOM 13 C1' G A1040 -122.780 76.920 173.298 1.00 85.66 C
ATOM 14 N9 G A1040 -124.035 76.811 174.036 1.00 84.82 N
ATOM 15 C8 G A1040 -125.288 77.046 173.527 1.00 84.82 C
ATOM 16 N7 G A1040 -126.225 76.860 174.404 1.00 84.82 N
ATOM 17 C5 G A1040 -125.547 76.484 175.557 1.00 84.82 C
ATOM 18 C6 G A1040 -126.034 76.145 176.846 1.00 84.82 C
ATOM 19 O6 G A1040 -127.206 76.124 177.241 1.00 84.82 O
ATOM 20 N1 G A1040 -125.012 75.825 177.733 1.00 84.82 N
ATOM 21 C2 G A1040 -123.683 75.819 177.428 1.00 84.82 C
ATOM 22 N2 G A1040 -122.867 75.481 178.433 1.00 84.82 N
ATOM 23 N3 G A1040 -123.209 76.124 176.229 1.00 84.82 N
ATOM 24 C4 G A1040 -124.190 76.445 175.349 1.00 84.82 C
ATOM 25 P A A1041 -119.327 76.539 170.270 1.00 71.12 P
ATOM 26 OP1 A A1041 -119.993 76.047 169.041 1.00 71.12 O
ATOM 27 OP2 A A1041 -118.143 75.787 170.796 1.00 71.12 O
ATOM 28 O5' A A1041 -118.954 78.076 170.096 1.00 71.12 O
TER
ATOM 1 O3' C B1038 -128.372 78.520 175.694 1.00 87.20 O
ATOM 2 P A B1039 -129.974 78.460 175.430 1.00 90.94 P
ATOM 3 OP1 A B1039 -130.618 79.340 176.449 1.00 90.94 O
ATOM 4 OP2 A B1039 -130.348 77.026 175.388 1.00 90.94 O
ATOM 5 O5' A B1039 -130.146 79.097 173.974 1.00 90.94 O
ATOM 6 C5' A B1039 -129.021 79.526 173.216 1.00 90.94 C
ATOM 7 C4' A B1039 -128.762 78.628 172.036 1.00 90.94 C
ATOM 8 O4' A B1039 -130.009 78.429 171.319 1.00 90.94 O
ATOM 9 C3' A B1039 -127.761 79.179 171.019 1.00 90.94 C
ATOM 10 O3' A B1039 -126.960 78.119 170.491 1.00 90.94 O
ATOM 11 C2' A B1039 -128.655 79.760 169.926 1.00 90.94 C
ATOM 12 O2' A B1039 -128.064 79.803 168.645 1.00 90.94 O
ATOM 13 C1' A B1039 -129.862 78.823 169.969 1.00 90.94 C
ATOM 14 N9 A B1039 -131.124 79.446 169.520 1.00 90.71 N
ATOM 15 C8 A B1039 -131.235 80.368 168.505 1.00 90.71 C
ATOM 16 N7 A B1039 -132.454 80.778 168.257 1.00 90.71 N
ATOM 17 C5 A B1039 -133.221 80.078 169.173 1.00 90.71 C
ATOM 18 C6 A B1039 -134.607 80.082 169.408 1.00 90.71 C
ATOM 19 N6 A B1039 -135.462 80.844 168.709 1.00 90.71 N
ATOM 20 N1 A B1039 -135.074 79.276 170.393 1.00 90.71 N
ATOM 21 C2 A B1039 -134.207 78.523 171.082 1.00 90.71 C
ATOM 22 N3 A B1039 -132.885 78.439 170.948 1.00 90.71 N
ATOM 23 C4 A B1039 -132.431 79.251 169.963 1.00 90.71 C
ATOM 24 P G B1040 -125.596 78.454 169.691 1.00 85.66 P
ATOM 25 OP1 G B1040 -125.717 79.850 169.184 1.00 85.66 O
ATOM 26 OP2 G B1040 -125.383 77.351 168.709 1.00 85.66 O
ATOM 27 O5' G B1040 -124.481 78.391 170.832 1.00 85.66 O
TER
Atoms:
OP1: (-125.717,79.850,169.184)
OP2: (-125.383,77.351,168.709)
C3': (-121.812,76.850,171.133)
C1': (-122.780,76.920,173.298)
C5': (-123.183,78.947,170.620)
O6: (-127.206,76.124,177.241)
O4': (-122.653,78.258,172.859)
C8: (-125.288,77.046,173.527)
C2: (-123.683,75.819,177.428)
C6: (-126.034,76.145,176.846)
C5: (-125.547,76.484,175.557)
C4: (-124.190,76.445,175.349)
P: (-125.596,78.454,169.691)
C4': (-122.149,78.292,171.499)
C2': (-122.734,76.048,172.045)
O2': (-122.297,74.736,172.330)
N1: (-125.012,75.825,177.733)
N2: (-122.867,75.481,178.433)
N3: (-123.209,76.124,176.229)
N7: (-126.225,76.860,174.404)
N9: (-124.035,76.811,174.036)
O5': (-124.481,78.391,170.832)
O3': (-120.442,76.570,171.444)
OP2: (-125.383,77.351,168.709)
C3': (-121.812,76.850,171.133)
C1': (-122.780,76.920,173.298)
C5': (-123.183,78.947,170.620)
O6: (-127.206,76.124,177.241)
O4': (-122.653,78.258,172.859)
C8: (-125.288,77.046,173.527)
C2: (-123.683,75.819,177.428)
C6: (-126.034,76.145,176.846)
C5: (-125.547,76.484,175.557)
C4: (-124.190,76.445,175.349)
P: (-125.596,78.454,169.691)
C4': (-122.149,78.292,171.499)
C2': (-122.734,76.048,172.045)
O2': (-122.297,74.736,172.330)
N1: (-125.012,75.825,177.733)
N2: (-122.867,75.481,178.433)
N3: (-123.209,76.124,176.229)
N7: (-126.225,76.860,174.404)
N9: (-124.035,76.811,174.036)
O5': (-124.481,78.391,170.832)
O3': (-120.442,76.570,171.444)
OP1: (-130.618,79.340,176.449)
OP2: (-130.348,77.026,175.388)
C3': (-127.761,79.179,171.019)
C1': (-129.862,78.823,169.969)
C5': (-129.021,79.526,173.216)
O4': (-130.009,78.429,171.319)
C8: (-131.235,80.368,168.505)
O2': (-128.064,79.803,168.645)
C6: (-134.607,80.082,169.408)
C5: (-133.221,80.078,169.173)
C4: (-132.431,79.251,169.963)
P: (-129.974,78.460,175.430)
C4': (-128.762,78.628,172.036)
C2': (-128.655,79.760,169.926)
C2: (-134.207,78.523,171.082)
N1: (-135.074,79.276,170.393)
N3: (-132.885,78.439,170.948)
N6: (-135.462,80.844,168.709)
N7: (-132.454,80.778,168.257)
N9: (-131.124,79.446,169.520)
O5': (-130.146,79.097,173.974)
O3': (-126.960,78.119,170.491)
OP2: (-130.348,77.026,175.388)
C3': (-127.761,79.179,171.019)
C1': (-129.862,78.823,169.969)
C5': (-129.021,79.526,173.216)
O4': (-130.009,78.429,171.319)
C8: (-131.235,80.368,168.505)
O2': (-128.064,79.803,168.645)
C6: (-134.607,80.082,169.408)
C5: (-133.221,80.078,169.173)
C4: (-132.431,79.251,169.963)
P: (-129.974,78.460,175.430)
C4': (-128.762,78.628,172.036)
C2': (-128.655,79.760,169.926)
C2: (-134.207,78.523,171.082)
N1: (-135.074,79.276,170.393)
N3: (-132.885,78.439,170.948)
N6: (-135.462,80.844,168.709)
N7: (-132.454,80.778,168.257)
N9: (-131.124,79.446,169.520)
O5': (-130.146,79.097,173.974)
O3': (-126.960,78.119,170.491)
Image (generated by PyMOL):