Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11955:11956
Extra
PDB:
ATOM 1 O3' A A1954 2.962 6.103 101.572 1.00 41.98 O
ATOM 2 P U A1955 1.654 5.307 101.922 1.00 43.82 P
ATOM 3 OP1 U A1955 2.037 4.198 102.787 1.00 43.81 O
ATOM 4 OP2 U A1955 0.989 5.043 100.670 1.00 43.65 O
ATOM 5 O5' U A1955 0.782 6.342 102.735 1.00 44.26 O
ATOM 6 C5' U A1955 1.274 7.601 103.104 1.00 44.41 C
ATOM 7 C4' U A1955 0.277 8.655 102.783 1.00 44.65 C
ATOM 8 O4' U A1955 0.444 9.049 101.416 1.00 44.39 O
ATOM 9 C3' U A1955 -1.178 8.243 102.865 1.00 44.87 C
ATOM 10 O3' U A1955 -1.672 8.290 104.187 1.00 45.24 O
ATOM 11 C2' U A1955 -1.870 9.237 101.929 1.00 44.94 C
ATOM 12 O2' U A1955 -2.188 10.424 102.622 1.00 45.31 O
ATOM 13 C1' U A1955 -0.763 9.572 100.930 1.00 44.58 C
ATOM 14 N1 U A1955 -0.986 9.035 99.593 1.00 44.29 N
ATOM 15 C2 U A1955 -1.610 9.870 98.709 1.00 44.35 C
ATOM 16 O2 U A1955 -2.018 10.938 99.085 1.00 44.66 O
ATOM 17 N3 U A1955 -1.745 9.378 97.434 1.00 44.08 N
ATOM 18 C4 U A1955 -1.267 8.129 97.035 1.00 43.75 C
ATOM 19 O4 U A1955 -1.410 7.744 95.888 1.00 43.53 O
ATOM 20 C5 U A1955 -0.607 7.347 98.020 1.00 43.70 C
ATOM 21 C6 U A1955 -0.464 7.814 99.257 1.00 43.97 C
ATOM 22 P A A1956 -2.158 6.955 104.928 1.00 39.87 P
ATOM 23 OP1 A A1956 -1.351 6.797 106.166 1.00 39.99 O
ATOM 24 OP2 A A1956 -2.114 5.874 103.934 1.00 39.51 O
ATOM 25 O5' A A1956 -3.642 7.293 105.319 1.00 40.27 O
TER
ATOM 1 O3' U B1955 -1.672 8.290 104.187 1.00 45.24 O
ATOM 2 P A B1956 -2.158 6.955 104.928 1.00 39.87 P
ATOM 3 OP1 A B1956 -1.351 6.797 106.166 1.00 39.99 O
ATOM 4 OP2 A B1956 -2.114 5.874 103.934 1.00 39.51 O
ATOM 5 O5' A B1956 -3.642 7.293 105.319 1.00 40.27 O
ATOM 6 C5' A B1956 -3.912 8.397 106.161 1.00 40.66 C
ATOM 7 C4' A B1956 -5.058 9.203 105.621 1.00 40.87 C
ATOM 8 O4' A B1956 -4.694 9.721 104.316 1.00 40.59 O
ATOM 9 C3' A B1956 -6.334 8.412 105.400 1.00 40.97 C
ATOM 10 O3' A B1956 -7.139 8.356 106.552 1.00 41.38 O
ATOM 11 C2' A B1956 -6.992 9.071 104.193 1.00 40.93 C
ATOM 12 O2' A B1956 -7.837 10.136 104.584 1.00 41.34 O
ATOM 13 C1' A B1956 -5.777 9.637 103.434 1.00 40.60 C
ATOM 14 N9 A B1956 -5.371 8.796 102.298 1.00 40.17 N
ATOM 15 C8 A B1956 -4.918 7.500 102.324 1.00 39.91 C
ATOM 16 N7 A B1956 -4.635 7.029 101.121 1.00 39.55 N
ATOM 17 C5 A B1956 -4.907 8.084 100.258 1.00 39.58 C
ATOM 18 C6 A B1956 -4.799 8.227 98.878 1.00 39.32 C
ATOM 19 N6 A B1956 -4.415 7.313 98.007 1.00 38.96 N
ATOM 20 N1 A B1956 -5.134 9.401 98.389 1.00 39.46 N
ATOM 21 C2 A B1956 -5.566 10.346 99.218 1.00 39.83 C
ATOM 22 N3 A B1956 -5.700 10.355 100.515 1.00 40.10 N
ATOM 23 C4 A B1956 -5.347 9.176 100.980 1.00 39.95 C
ATOM 24 P G B1957 -7.697 6.938 107.074 1.00 44.11 P
ATOM 25 OP1 G B1957 -8.361 7.164 108.365 1.00 44.58 O
ATOM 26 OP2 G B1957 -6.612 5.976 107.022 1.00 43.75 O
ATOM 27 O5' G B1957 -8.779 6.566 105.972 1.00 44.03 O
TER
ATOM 2 P U A1955 1.654 5.307 101.922 1.00 43.82 P
ATOM 3 OP1 U A1955 2.037 4.198 102.787 1.00 43.81 O
ATOM 4 OP2 U A1955 0.989 5.043 100.670 1.00 43.65 O
ATOM 5 O5' U A1955 0.782 6.342 102.735 1.00 44.26 O
ATOM 6 C5' U A1955 1.274 7.601 103.104 1.00 44.41 C
ATOM 7 C4' U A1955 0.277 8.655 102.783 1.00 44.65 C
ATOM 8 O4' U A1955 0.444 9.049 101.416 1.00 44.39 O
ATOM 9 C3' U A1955 -1.178 8.243 102.865 1.00 44.87 C
ATOM 10 O3' U A1955 -1.672 8.290 104.187 1.00 45.24 O
ATOM 11 C2' U A1955 -1.870 9.237 101.929 1.00 44.94 C
ATOM 12 O2' U A1955 -2.188 10.424 102.622 1.00 45.31 O
ATOM 13 C1' U A1955 -0.763 9.572 100.930 1.00 44.58 C
ATOM 14 N1 U A1955 -0.986 9.035 99.593 1.00 44.29 N
ATOM 15 C2 U A1955 -1.610 9.870 98.709 1.00 44.35 C
ATOM 16 O2 U A1955 -2.018 10.938 99.085 1.00 44.66 O
ATOM 17 N3 U A1955 -1.745 9.378 97.434 1.00 44.08 N
ATOM 18 C4 U A1955 -1.267 8.129 97.035 1.00 43.75 C
ATOM 19 O4 U A1955 -1.410 7.744 95.888 1.00 43.53 O
ATOM 20 C5 U A1955 -0.607 7.347 98.020 1.00 43.70 C
ATOM 21 C6 U A1955 -0.464 7.814 99.257 1.00 43.97 C
ATOM 22 P A A1956 -2.158 6.955 104.928 1.00 39.87 P
ATOM 23 OP1 A A1956 -1.351 6.797 106.166 1.00 39.99 O
ATOM 24 OP2 A A1956 -2.114 5.874 103.934 1.00 39.51 O
ATOM 25 O5' A A1956 -3.642 7.293 105.319 1.00 40.27 O
TER
ATOM 1 O3' U B1955 -1.672 8.290 104.187 1.00 45.24 O
ATOM 2 P A B1956 -2.158 6.955 104.928 1.00 39.87 P
ATOM 3 OP1 A B1956 -1.351 6.797 106.166 1.00 39.99 O
ATOM 4 OP2 A B1956 -2.114 5.874 103.934 1.00 39.51 O
ATOM 5 O5' A B1956 -3.642 7.293 105.319 1.00 40.27 O
ATOM 6 C5' A B1956 -3.912 8.397 106.161 1.00 40.66 C
ATOM 7 C4' A B1956 -5.058 9.203 105.621 1.00 40.87 C
ATOM 8 O4' A B1956 -4.694 9.721 104.316 1.00 40.59 O
ATOM 9 C3' A B1956 -6.334 8.412 105.400 1.00 40.97 C
ATOM 10 O3' A B1956 -7.139 8.356 106.552 1.00 41.38 O
ATOM 11 C2' A B1956 -6.992 9.071 104.193 1.00 40.93 C
ATOM 12 O2' A B1956 -7.837 10.136 104.584 1.00 41.34 O
ATOM 13 C1' A B1956 -5.777 9.637 103.434 1.00 40.60 C
ATOM 14 N9 A B1956 -5.371 8.796 102.298 1.00 40.17 N
ATOM 15 C8 A B1956 -4.918 7.500 102.324 1.00 39.91 C
ATOM 16 N7 A B1956 -4.635 7.029 101.121 1.00 39.55 N
ATOM 17 C5 A B1956 -4.907 8.084 100.258 1.00 39.58 C
ATOM 18 C6 A B1956 -4.799 8.227 98.878 1.00 39.32 C
ATOM 19 N6 A B1956 -4.415 7.313 98.007 1.00 38.96 N
ATOM 20 N1 A B1956 -5.134 9.401 98.389 1.00 39.46 N
ATOM 21 C2 A B1956 -5.566 10.346 99.218 1.00 39.83 C
ATOM 22 N3 A B1956 -5.700 10.355 100.515 1.00 40.10 N
ATOM 23 C4 A B1956 -5.347 9.176 100.980 1.00 39.95 C
ATOM 24 P G B1957 -7.697 6.938 107.074 1.00 44.11 P
ATOM 25 OP1 G B1957 -8.361 7.164 108.365 1.00 44.58 O
ATOM 26 OP2 G B1957 -6.612 5.976 107.022 1.00 43.75 O
ATOM 27 O5' G B1957 -8.779 6.566 105.972 1.00 44.03 O
TER
Atoms:
C4: (-1.267,8.129,97.035)
N3: (-1.745,9.378,97.434)
OP1: (2.037,4.198,102.787)
OP2: (0.989,5.043,100.670)
C2: (-1.610,9.870,98.709)
C1': (-0.763,9.572,100.930)
C3': (-1.178,8.243,102.865)
O5': (0.782,6.342,102.735)
O4': (0.444,9.049,101.416)
C5': (1.274,7.601,103.104)
P: (1.654,5.307,101.922)
C4': (0.277,8.655,102.783)
C2': (-1.870,9.237,101.929)
O2': (-2.188,10.424,102.622)
N1: (-0.986,9.035,99.593)
O4: (-1.410,7.744,95.888)
O2: (-2.018,10.938,99.085)
C6: (-0.464,7.814,99.257)
C5: (-0.607,7.347,98.020)
O3': (-1.672,8.290,104.187)
N3: (-1.745,9.378,97.434)
OP1: (2.037,4.198,102.787)
OP2: (0.989,5.043,100.670)
C2: (-1.610,9.870,98.709)
C1': (-0.763,9.572,100.930)
C3': (-1.178,8.243,102.865)
O5': (0.782,6.342,102.735)
O4': (0.444,9.049,101.416)
C5': (1.274,7.601,103.104)
P: (1.654,5.307,101.922)
C4': (0.277,8.655,102.783)
C2': (-1.870,9.237,101.929)
O2': (-2.188,10.424,102.622)
N1: (-0.986,9.035,99.593)
O4: (-1.410,7.744,95.888)
O2: (-2.018,10.938,99.085)
C6: (-0.464,7.814,99.257)
C5: (-0.607,7.347,98.020)
O3': (-1.672,8.290,104.187)
OP1: (-1.351,6.797,106.166)
OP2: (-2.114,5.874,103.934)
C3': (-6.334,8.412,105.400)
C1': (-5.777,9.637,103.434)
C5': (-3.912,8.397,106.161)
O4': (-4.694,9.721,104.316)
C8: (-4.918,7.500,102.324)
O2': (-7.837,10.136,104.584)
C6: (-4.799,8.227,98.878)
C5: (-4.907,8.084,100.258)
C4: (-5.347,9.176,100.980)
P: (-2.158,6.955,104.928)
C4': (-5.058,9.203,105.621)
C2': (-6.992,9.071,104.193)
C2: (-5.566,10.346,99.218)
N1: (-5.134,9.401,98.389)
N3: (-5.700,10.355,100.515)
N6: (-4.415,7.313,98.007)
N7: (-4.635,7.029,101.121)
N9: (-5.371,8.796,102.298)
O5': (-3.642,7.293,105.319)
O3': (-7.139,8.356,106.552)
OP2: (-2.114,5.874,103.934)
C3': (-6.334,8.412,105.400)
C1': (-5.777,9.637,103.434)
C5': (-3.912,8.397,106.161)
O4': (-4.694,9.721,104.316)
C8: (-4.918,7.500,102.324)
O2': (-7.837,10.136,104.584)
C6: (-4.799,8.227,98.878)
C5: (-4.907,8.084,100.258)
C4: (-5.347,9.176,100.980)
P: (-2.158,6.955,104.928)
C4': (-5.058,9.203,105.621)
C2': (-6.992,9.071,104.193)
C2: (-5.566,10.346,99.218)
N1: (-5.134,9.401,98.389)
N3: (-5.700,10.355,100.515)
N6: (-4.415,7.313,98.007)
N7: (-4.635,7.029,101.121)
N9: (-5.371,8.796,102.298)
O5': (-3.642,7.293,105.319)
O3': (-7.139,8.356,106.552)
Image (generated by PyMOL):