Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1479:1477
Extra
PDB:
ATOM 1 O3' U A 478 44.409 -1.277 -30.283 1.00 80.78 O
ATOM 2 P G A 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G A 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G A 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G A 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G A 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G A 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G A 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G A 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G A 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G A 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G A 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G A 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G A 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G A 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G A 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G A 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G A 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G A 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G A 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G A 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G A 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G A 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G A 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
TER
ATOM 1 O3' A B 476 43.011 -11.803 -32.151 1.00 95.20 O
ATOM 2 P A B 477 42.045 -10.567 -32.504 1.00 86.49 P
ATOM 3 OP1 A B 477 40.756 -10.796 -31.796 1.00 86.16 O
ATOM 4 OP2 A B 477 42.041 -10.422 -33.994 1.00 87.41 O
ATOM 5 O5' A B 477 42.798 -9.332 -31.848 1.00 85.98 O
ATOM 6 C5' A B 477 42.993 -9.239 -30.448 1.00 85.10 C
ATOM 7 C4' A B 477 43.745 -7.989 -30.110 1.00 84.81 C
ATOM 8 O4' A B 477 44.981 -7.971 -30.880 1.00 85.20 O
ATOM 9 C3' A B 477 43.011 -6.691 -30.459 1.00 85.04 C
ATOM 10 O3' A B 477 43.270 -5.715 -29.477 1.00 84.41 O
ATOM 11 C2' A B 477 43.673 -6.259 -31.751 1.00 85.77 C
ATOM 12 O2' A B 477 43.615 -4.874 -32.000 1.00 85.91 O
ATOM 13 C1' A B 477 45.096 -6.723 -31.518 1.00 85.55 C
ATOM 14 N9 A B 477 45.882 -6.861 -32.742 1.00 86.25 N
ATOM 15 C8 A B 477 45.642 -7.560 -33.894 1.00 87.00 C
ATOM 16 N7 A B 477 46.553 -7.397 -34.829 1.00 87.53 N
ATOM 17 C5 A B 477 47.437 -6.506 -34.247 1.00 87.09 C
ATOM 18 C6 A B 477 48.626 -5.919 -34.705 1.00 87.31 C
ATOM 19 N6 A B 477 49.133 -6.176 -35.915 1.00 88.06 N
ATOM 20 N1 A B 477 49.275 -5.058 -33.874 1.00 86.75 N
ATOM 21 C2 A B 477 48.751 -4.813 -32.668 1.00 86.02 C
ATOM 22 N3 A B 477 47.643 -5.315 -32.120 1.00 85.75 N
ATOM 23 C4 A B 477 47.030 -6.160 -32.972 1.00 86.32 C
ATOM 24 P U B 478 42.518 -5.773 -28.072 1.00 79.60 P
ATOM 25 OP1 U B 478 43.363 -6.582 -27.185 1.00 79.03 O
ATOM 26 OP2 U B 478 41.127 -6.207 -28.320 1.00 79.85 O
ATOM 27 O5' U B 478 42.527 -4.255 -27.599 1.00 79.30 O
TER
ATOM 2 P G A 479 43.687 -0.987 -31.685 1.00 93.81 P
ATOM 3 OP1 G A 479 43.228 0.427 -31.656 1.00 93.85 O
ATOM 4 OP2 G A 479 42.683 -2.060 -31.916 1.00 94.01 O
ATOM 5 O5' G A 479 44.873 -1.144 -32.701 1.00 94.35 O
ATOM 6 C5' G A 479 45.742 -2.248 -32.638 1.00 94.24 C
ATOM 7 C4' G A 479 46.639 -2.237 -33.818 1.00 94.92 C
ATOM 8 O4' G A 479 46.577 -3.533 -34.468 1.00 95.33 O
ATOM 9 C3' G A 479 46.245 -1.203 -34.866 1.00 95.61 C
ATOM 10 O3' G A 479 47.409 -0.693 -35.500 1.00 95.95 O
ATOM 11 C2' G A 479 45.436 -2.022 -35.861 1.00 96.28 C
ATOM 12 O2' G A 479 45.405 -1.487 -37.172 1.00 97.13 O
ATOM 13 C1' G A 479 46.149 -3.380 -35.801 1.00 96.20 C
ATOM 14 N9 G A 479 45.293 -4.523 -36.128 1.00 96.47 N
ATOM 15 C8 G A 479 44.210 -4.935 -35.401 1.00 96.08 C
ATOM 16 N7 G A 479 43.626 -5.980 -35.914 1.00 96.46 N
ATOM 17 C5 G A 479 44.372 -6.285 -37.042 1.00 97.14 C
ATOM 18 C6 G A 479 44.220 -7.321 -37.998 1.00 97.80 C
ATOM 19 O6 G A 479 43.371 -8.209 -38.053 1.00 97.92 O
ATOM 20 N1 G A 479 45.193 -7.282 -38.978 1.00 98.37 N
ATOM 21 C2 G A 479 46.186 -6.345 -39.047 1.00 98.33 C
ATOM 22 N2 G A 479 47.039 -6.474 -40.073 1.00 98.96 N
ATOM 23 N3 G A 479 46.341 -5.372 -38.164 1.00 97.73 N
ATOM 24 C4 G A 479 45.410 -5.400 -37.187 1.00 97.15 C
ATOM 25 P U A 480 48.121 0.645 -34.959 1.00 81.87 P
ATOM 26 OP1 U A 480 48.627 0.346 -33.582 1.00 80.98 O
ATOM 27 OP2 U A 480 47.143 1.761 -35.133 1.00 82.06 O
ATOM 28 O5' U A 480 49.347 0.804 -35.989 1.00 82.46 O
TER
ATOM 1 O3' A B 476 43.011 -11.803 -32.151 1.00 95.20 O
ATOM 2 P A B 477 42.045 -10.567 -32.504 1.00 86.49 P
ATOM 3 OP1 A B 477 40.756 -10.796 -31.796 1.00 86.16 O
ATOM 4 OP2 A B 477 42.041 -10.422 -33.994 1.00 87.41 O
ATOM 5 O5' A B 477 42.798 -9.332 -31.848 1.00 85.98 O
ATOM 6 C5' A B 477 42.993 -9.239 -30.448 1.00 85.10 C
ATOM 7 C4' A B 477 43.745 -7.989 -30.110 1.00 84.81 C
ATOM 8 O4' A B 477 44.981 -7.971 -30.880 1.00 85.20 O
ATOM 9 C3' A B 477 43.011 -6.691 -30.459 1.00 85.04 C
ATOM 10 O3' A B 477 43.270 -5.715 -29.477 1.00 84.41 O
ATOM 11 C2' A B 477 43.673 -6.259 -31.751 1.00 85.77 C
ATOM 12 O2' A B 477 43.615 -4.874 -32.000 1.00 85.91 O
ATOM 13 C1' A B 477 45.096 -6.723 -31.518 1.00 85.55 C
ATOM 14 N9 A B 477 45.882 -6.861 -32.742 1.00 86.25 N
ATOM 15 C8 A B 477 45.642 -7.560 -33.894 1.00 87.00 C
ATOM 16 N7 A B 477 46.553 -7.397 -34.829 1.00 87.53 N
ATOM 17 C5 A B 477 47.437 -6.506 -34.247 1.00 87.09 C
ATOM 18 C6 A B 477 48.626 -5.919 -34.705 1.00 87.31 C
ATOM 19 N6 A B 477 49.133 -6.176 -35.915 1.00 88.06 N
ATOM 20 N1 A B 477 49.275 -5.058 -33.874 1.00 86.75 N
ATOM 21 C2 A B 477 48.751 -4.813 -32.668 1.00 86.02 C
ATOM 22 N3 A B 477 47.643 -5.315 -32.120 1.00 85.75 N
ATOM 23 C4 A B 477 47.030 -6.160 -32.972 1.00 86.32 C
ATOM 24 P U B 478 42.518 -5.773 -28.072 1.00 79.60 P
ATOM 25 OP1 U B 478 43.363 -6.582 -27.185 1.00 79.03 O
ATOM 26 OP2 U B 478 41.127 -6.207 -28.320 1.00 79.85 O
ATOM 27 O5' U B 478 42.527 -4.255 -27.599 1.00 79.30 O
TER
Atoms:
OP1: (43.228,0.427,-31.656)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
OP2: (42.683,-2.060,-31.916)
C3': (46.245,-1.203,-34.866)
C1': (46.149,-3.380,-35.801)
C5': (45.742,-2.248,-32.638)
O6: (43.371,-8.209,-38.053)
O4': (46.577,-3.533,-34.468)
C8: (44.210,-4.935,-35.401)
C2: (46.186,-6.345,-39.047)
C6: (44.220,-7.321,-37.998)
C5: (44.372,-6.285,-37.042)
C4: (45.410,-5.400,-37.187)
P: (43.687,-0.987,-31.685)
C4': (46.639,-2.237,-33.818)
C2': (45.436,-2.022,-35.861)
O2': (45.405,-1.487,-37.172)
N1: (45.193,-7.282,-38.978)
N2: (47.039,-6.474,-40.073)
N3: (46.341,-5.372,-38.164)
N7: (43.626,-5.980,-35.914)
N9: (45.293,-4.523,-36.128)
O5': (44.873,-1.144,-32.701)
O3': (47.409,-0.693,-35.500)
OP1: (40.756,-10.796,-31.796)
OP2: (42.041,-10.422,-33.994)
C3': (43.011,-6.691,-30.459)
C1': (45.096,-6.723,-31.518)
C5': (42.993,-9.239,-30.448)
O4': (44.981,-7.971,-30.880)
C8: (45.642,-7.560,-33.894)
O2': (43.615,-4.874,-32.000)
C6: (48.626,-5.919,-34.705)
C5: (47.437,-6.506,-34.247)
C4: (47.030,-6.160,-32.972)
P: (42.045,-10.567,-32.504)
C4': (43.745,-7.989,-30.110)
C2': (43.673,-6.259,-31.751)
C2: (48.751,-4.813,-32.668)
N1: (49.275,-5.058,-33.874)
N3: (47.643,-5.315,-32.120)
N6: (49.133,-6.176,-35.915)
N7: (46.553,-7.397,-34.829)
N9: (45.882,-6.861,-32.742)
O5': (42.798,-9.332,-31.848)
O3': (43.270,-5.715,-29.477)
OP2: (42.041,-10.422,-33.994)
C3': (43.011,-6.691,-30.459)
C1': (45.096,-6.723,-31.518)
C5': (42.993,-9.239,-30.448)
O4': (44.981,-7.971,-30.880)
C8: (45.642,-7.560,-33.894)
O2': (43.615,-4.874,-32.000)
C6: (48.626,-5.919,-34.705)
C5: (47.437,-6.506,-34.247)
C4: (47.030,-6.160,-32.972)
P: (42.045,-10.567,-32.504)
C4': (43.745,-7.989,-30.110)
C2': (43.673,-6.259,-31.751)
C2: (48.751,-4.813,-32.668)
N1: (49.275,-5.058,-33.874)
N3: (47.643,-5.315,-32.120)
N6: (49.133,-6.176,-35.915)
N7: (46.553,-7.397,-34.829)
N9: (45.882,-6.861,-32.742)
O5': (42.798,-9.332,-31.848)
O3': (43.270,-5.715,-29.477)
Image (generated by PyMOL):