Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D0U:A39:A38
Extra
PDB:
ATOM 1 O3' A A 38 -13.212 37.752 -10.222 1.00 46.92 O
ATOM 2 P G A 39 -13.340 37.479 -8.653 1.00 49.20 P
ATOM 3 OP1 G A 39 -13.808 36.080 -8.484 1.00 42.47 O
ATOM 4 OP2 G A 39 -14.040 38.623 -8.021 1.00 44.77 O
ATOM 5 O5' G A 39 -11.810 37.529 -8.199 1.00 50.17 O
ATOM 6 C5' G A 39 -10.936 36.488 -8.619 1.00 49.32 C
ATOM 7 C4' G A 39 -9.495 36.947 -8.555 1.00 49.28 C
ATOM 8 O4' G A 39 -9.291 37.967 -9.569 1.00 50.11 O
ATOM 9 C3' G A 39 -9.104 37.550 -7.212 1.00 49.21 C
ATOM 10 O3' G A 39 -7.791 37.151 -6.836 1.00 51.85 O
ATOM 11 C2' G A 39 -9.204 39.041 -7.506 1.00 50.46 C
ATOM 12 O2' G A 39 -8.381 39.845 -6.687 1.00 52.08 O
ATOM 13 C1' G A 39 -8.772 39.126 -8.966 1.00 50.87 C
ATOM 14 N9 G A 39 -9.399 40.292 -9.560 1.00 51.97 N
ATOM 15 C8 G A 39 -10.649 40.375 -10.121 1.00 52.44 C
ATOM 16 N7 G A 39 -10.949 41.574 -10.540 1.00 52.41 N
ATOM 17 C5 G A 39 -9.829 42.331 -10.227 1.00 53.41 C
ATOM 18 C6 G A 39 -9.564 43.704 -10.437 1.00 56.23 C
ATOM 19 O6 G A 39 -10.288 44.561 -10.961 1.00 59.37 O
ATOM 20 N1 G A 39 -8.305 44.059 -9.966 1.00 56.56 N
ATOM 21 C2 G A 39 -7.418 43.198 -9.369 1.00 56.14 C
ATOM 22 N2 G A 39 -6.251 43.730 -8.979 1.00 56.86 N
ATOM 23 N3 G A 39 -7.654 41.911 -9.164 1.00 55.77 N
ATOM 24 C4 G A 39 -8.873 41.554 -9.618 1.00 53.01 C
ATOM 25 P G A 40 -7.435 36.791 -5.313 1.00 53.38 P
ATOM 26 OP1 G A 40 -5.967 36.624 -5.259 1.00 55.22 O
ATOM 27 OP2 G A 40 -8.314 35.698 -4.843 1.00 51.36 O
ATOM 28 O5' G A 40 -7.803 38.126 -4.512 1.00 51.17 O
TER
ATOM 1 O3' C B 37 -19.134 39.806 -11.009 1.00 48.61 O
ATOM 2 P A B 38 -17.659 40.375 -11.250 1.00 49.83 P
ATOM 3 OP1 A B 38 -17.128 40.740 -9.918 1.00 46.58 O
ATOM 4 OP2 A B 38 -17.688 41.378 -12.340 1.00 45.12 O
ATOM 5 O5' A B 38 -16.879 39.093 -11.797 1.00 46.42 O
ATOM 6 C5' A B 38 -16.756 37.942 -10.984 1.00 44.85 C
ATOM 7 C4' A B 38 -15.377 37.359 -11.198 1.00 46.39 C
ATOM 8 O4' A B 38 -15.254 36.919 -12.575 1.00 45.32 O
ATOM 9 C3' A B 38 -14.248 38.358 -10.961 1.00 44.60 C
ATOM 10 O3' A B 38 -13.212 37.752 -10.222 1.00 46.92 O
ATOM 11 C2' A B 38 -13.746 38.652 -12.363 1.00 45.16 C
ATOM 12 O2' A B 38 -12.367 38.945 -12.360 1.00 49.13 O
ATOM 13 C1' A B 38 -13.980 37.305 -13.026 1.00 45.09 C
ATOM 14 N9 A B 38 -13.976 37.393 -14.478 1.00 46.36 N
ATOM 15 C8 A B 38 -14.616 38.325 -15.241 1.00 48.43 C
ATOM 16 N7 A B 38 -14.430 38.174 -16.530 1.00 48.49 N
ATOM 17 C5 A B 38 -13.606 37.067 -16.614 1.00 47.59 C
ATOM 18 C6 A B 38 -13.042 36.392 -17.710 1.00 48.25 C
ATOM 19 N6 A B 38 -13.243 36.768 -18.976 1.00 49.91 N
ATOM 20 N1 A B 38 -12.266 35.321 -17.459 1.00 47.32 N
ATOM 21 C2 A B 38 -12.073 34.963 -16.189 1.00 48.09 C
ATOM 22 N3 A B 38 -12.547 35.519 -15.076 1.00 49.69 N
ATOM 23 C4 A B 38 -13.315 36.576 -15.362 1.00 47.32 C
ATOM 24 P G B 39 -13.340 37.479 -8.653 1.00 49.20 P
ATOM 25 OP1 G B 39 -13.808 36.080 -8.484 1.00 42.47 O
ATOM 26 OP2 G B 39 -14.040 38.623 -8.021 1.00 44.77 O
ATOM 27 O5' G B 39 -11.810 37.529 -8.199 1.00 50.17 O
TER
ATOM 2 P G A 39 -13.340 37.479 -8.653 1.00 49.20 P
ATOM 3 OP1 G A 39 -13.808 36.080 -8.484 1.00 42.47 O
ATOM 4 OP2 G A 39 -14.040 38.623 -8.021 1.00 44.77 O
ATOM 5 O5' G A 39 -11.810 37.529 -8.199 1.00 50.17 O
ATOM 6 C5' G A 39 -10.936 36.488 -8.619 1.00 49.32 C
ATOM 7 C4' G A 39 -9.495 36.947 -8.555 1.00 49.28 C
ATOM 8 O4' G A 39 -9.291 37.967 -9.569 1.00 50.11 O
ATOM 9 C3' G A 39 -9.104 37.550 -7.212 1.00 49.21 C
ATOM 10 O3' G A 39 -7.791 37.151 -6.836 1.00 51.85 O
ATOM 11 C2' G A 39 -9.204 39.041 -7.506 1.00 50.46 C
ATOM 12 O2' G A 39 -8.381 39.845 -6.687 1.00 52.08 O
ATOM 13 C1' G A 39 -8.772 39.126 -8.966 1.00 50.87 C
ATOM 14 N9 G A 39 -9.399 40.292 -9.560 1.00 51.97 N
ATOM 15 C8 G A 39 -10.649 40.375 -10.121 1.00 52.44 C
ATOM 16 N7 G A 39 -10.949 41.574 -10.540 1.00 52.41 N
ATOM 17 C5 G A 39 -9.829 42.331 -10.227 1.00 53.41 C
ATOM 18 C6 G A 39 -9.564 43.704 -10.437 1.00 56.23 C
ATOM 19 O6 G A 39 -10.288 44.561 -10.961 1.00 59.37 O
ATOM 20 N1 G A 39 -8.305 44.059 -9.966 1.00 56.56 N
ATOM 21 C2 G A 39 -7.418 43.198 -9.369 1.00 56.14 C
ATOM 22 N2 G A 39 -6.251 43.730 -8.979 1.00 56.86 N
ATOM 23 N3 G A 39 -7.654 41.911 -9.164 1.00 55.77 N
ATOM 24 C4 G A 39 -8.873 41.554 -9.618 1.00 53.01 C
ATOM 25 P G A 40 -7.435 36.791 -5.313 1.00 53.38 P
ATOM 26 OP1 G A 40 -5.967 36.624 -5.259 1.00 55.22 O
ATOM 27 OP2 G A 40 -8.314 35.698 -4.843 1.00 51.36 O
ATOM 28 O5' G A 40 -7.803 38.126 -4.512 1.00 51.17 O
TER
ATOM 1 O3' C B 37 -19.134 39.806 -11.009 1.00 48.61 O
ATOM 2 P A B 38 -17.659 40.375 -11.250 1.00 49.83 P
ATOM 3 OP1 A B 38 -17.128 40.740 -9.918 1.00 46.58 O
ATOM 4 OP2 A B 38 -17.688 41.378 -12.340 1.00 45.12 O
ATOM 5 O5' A B 38 -16.879 39.093 -11.797 1.00 46.42 O
ATOM 6 C5' A B 38 -16.756 37.942 -10.984 1.00 44.85 C
ATOM 7 C4' A B 38 -15.377 37.359 -11.198 1.00 46.39 C
ATOM 8 O4' A B 38 -15.254 36.919 -12.575 1.00 45.32 O
ATOM 9 C3' A B 38 -14.248 38.358 -10.961 1.00 44.60 C
ATOM 10 O3' A B 38 -13.212 37.752 -10.222 1.00 46.92 O
ATOM 11 C2' A B 38 -13.746 38.652 -12.363 1.00 45.16 C
ATOM 12 O2' A B 38 -12.367 38.945 -12.360 1.00 49.13 O
ATOM 13 C1' A B 38 -13.980 37.305 -13.026 1.00 45.09 C
ATOM 14 N9 A B 38 -13.976 37.393 -14.478 1.00 46.36 N
ATOM 15 C8 A B 38 -14.616 38.325 -15.241 1.00 48.43 C
ATOM 16 N7 A B 38 -14.430 38.174 -16.530 1.00 48.49 N
ATOM 17 C5 A B 38 -13.606 37.067 -16.614 1.00 47.59 C
ATOM 18 C6 A B 38 -13.042 36.392 -17.710 1.00 48.25 C
ATOM 19 N6 A B 38 -13.243 36.768 -18.976 1.00 49.91 N
ATOM 20 N1 A B 38 -12.266 35.321 -17.459 1.00 47.32 N
ATOM 21 C2 A B 38 -12.073 34.963 -16.189 1.00 48.09 C
ATOM 22 N3 A B 38 -12.547 35.519 -15.076 1.00 49.69 N
ATOM 23 C4 A B 38 -13.315 36.576 -15.362 1.00 47.32 C
ATOM 24 P G B 39 -13.340 37.479 -8.653 1.00 49.20 P
ATOM 25 OP1 G B 39 -13.808 36.080 -8.484 1.00 42.47 O
ATOM 26 OP2 G B 39 -14.040 38.623 -8.021 1.00 44.77 O
ATOM 27 O5' G B 39 -11.810 37.529 -8.199 1.00 50.17 O
TER
Atoms:
OP1: (-13.808,36.080,-8.484)
OP2: (-14.040,38.623,-8.021)
C3': (-9.104,37.550,-7.212)
C1': (-8.772,39.126,-8.966)
C5': (-10.936,36.488,-8.619)
O6: (-10.288,44.561,-10.961)
O4': (-9.291,37.967,-9.569)
C8: (-10.649,40.375,-10.121)
C2: (-7.418,43.198,-9.369)
C6: (-9.564,43.704,-10.437)
C5: (-9.829,42.331,-10.227)
C4: (-8.873,41.554,-9.618)
P: (-13.340,37.479,-8.653)
C4': (-9.495,36.947,-8.555)
C2': (-9.204,39.041,-7.506)
O2': (-8.381,39.845,-6.687)
N1: (-8.305,44.059,-9.966)
N2: (-6.251,43.730,-8.979)
N3: (-7.654,41.911,-9.164)
N7: (-10.949,41.574,-10.540)
N9: (-9.399,40.292,-9.560)
O5': (-11.810,37.529,-8.199)
O3': (-7.791,37.151,-6.836)
OP2: (-14.040,38.623,-8.021)
C3': (-9.104,37.550,-7.212)
C1': (-8.772,39.126,-8.966)
C5': (-10.936,36.488,-8.619)
O6: (-10.288,44.561,-10.961)
O4': (-9.291,37.967,-9.569)
C8: (-10.649,40.375,-10.121)
C2: (-7.418,43.198,-9.369)
C6: (-9.564,43.704,-10.437)
C5: (-9.829,42.331,-10.227)
C4: (-8.873,41.554,-9.618)
P: (-13.340,37.479,-8.653)
C4': (-9.495,36.947,-8.555)
C2': (-9.204,39.041,-7.506)
O2': (-8.381,39.845,-6.687)
N1: (-8.305,44.059,-9.966)
N2: (-6.251,43.730,-8.979)
N3: (-7.654,41.911,-9.164)
N7: (-10.949,41.574,-10.540)
N9: (-9.399,40.292,-9.560)
O5': (-11.810,37.529,-8.199)
O3': (-7.791,37.151,-6.836)
OP1: (-17.128,40.740,-9.918)
OP2: (-17.688,41.378,-12.340)
C3': (-14.248,38.358,-10.961)
C1': (-13.980,37.305,-13.026)
C5': (-16.756,37.942,-10.984)
O4': (-15.254,36.919,-12.575)
C8: (-14.616,38.325,-15.241)
O2': (-12.367,38.945,-12.360)
C6: (-13.042,36.392,-17.710)
C5: (-13.606,37.067,-16.614)
C4: (-13.315,36.576,-15.362)
P: (-17.659,40.375,-11.250)
C4': (-15.377,37.359,-11.198)
C2': (-13.746,38.652,-12.363)
C2: (-12.073,34.963,-16.189)
N1: (-12.266,35.321,-17.459)
N3: (-12.547,35.519,-15.076)
N6: (-13.243,36.768,-18.976)
N7: (-14.430,38.174,-16.530)
N9: (-13.976,37.393,-14.478)
O5': (-16.879,39.093,-11.797)
O3': (-13.212,37.752,-10.222)
OP2: (-17.688,41.378,-12.340)
C3': (-14.248,38.358,-10.961)
C1': (-13.980,37.305,-13.026)
C5': (-16.756,37.942,-10.984)
O4': (-15.254,36.919,-12.575)
C8: (-14.616,38.325,-15.241)
O2': (-12.367,38.945,-12.360)
C6: (-13.042,36.392,-17.710)
C5: (-13.606,37.067,-16.614)
C4: (-13.315,36.576,-15.362)
P: (-17.659,40.375,-11.250)
C4': (-15.377,37.359,-11.198)
C2': (-13.746,38.652,-12.363)
C2: (-12.073,34.963,-16.189)
N1: (-12.266,35.321,-17.459)
N3: (-12.547,35.519,-15.076)
N6: (-13.243,36.768,-18.976)
N7: (-14.430,38.174,-16.530)
N9: (-13.976,37.393,-14.478)
O5': (-16.879,39.093,-11.797)
O3': (-13.212,37.752,-10.222)
Image (generated by PyMOL):