Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11170:11169
Extra
PDB:
ATOM 1 O3' A A1169 14.473 9.695 -16.585 1.00105.09 O
ATOM 2 P G A1170 12.929 9.751 -17.036 1.00115.62 P
ATOM 3 OP1 G A1170 12.114 9.906 -15.804 1.00116.24 O
ATOM 4 OP2 G A1170 12.677 8.576 -17.907 1.00115.90 O
ATOM 5 O5' G A1170 12.878 11.086 -17.896 1.00115.55 O
ATOM 6 C5' G A1170 13.263 12.327 -17.334 1.00115.16 C
ATOM 7 C4' G A1170 13.865 13.233 -18.372 1.00114.62 C
ATOM 8 O4' G A1170 15.125 12.678 -18.825 1.00113.68 O
ATOM 9 C3' G A1170 13.066 13.396 -19.658 1.00115.22 C
ATOM 10 O3' G A1170 11.981 14.303 -19.546 1.00115.99 O
ATOM 11 C2' G A1170 14.139 13.814 -20.652 1.00114.35 C
ATOM 12 O2' G A1170 14.544 15.156 -20.432 1.00113.94 O
ATOM 13 C1' G A1170 15.272 12.896 -20.218 1.00113.55 C
ATOM 14 N9 G A1170 15.201 11.591 -20.905 1.00113.70 N
ATOM 15 C8 G A1170 14.593 10.426 -20.479 1.00114.26 C
ATOM 16 N7 G A1170 14.701 9.448 -21.338 1.00114.25 N
ATOM 17 C5 G A1170 15.414 10.002 -22.393 1.00113.65 C
ATOM 18 C6 G A1170 15.838 9.424 -23.615 1.00113.37 C
ATOM 19 O6 G A1170 15.654 8.254 -24.007 1.00113.60 O
ATOM 20 N1 G A1170 16.536 10.367 -24.388 1.00112.75 N
ATOM 21 C2 G A1170 16.792 11.684 -24.040 1.00112.46 C
ATOM 22 N2 G A1170 17.480 12.457 -24.902 1.00111.87 N
ATOM 23 N3 G A1170 16.391 12.219 -22.902 1.00112.73 N
ATOM 24 C4 G A1170 15.721 11.325 -22.143 1.00113.31 C
ATOM 25 P C A1171 10.468 13.747 -19.506 1.00130.90 P
ATOM 26 OP1 C A1171 9.934 13.976 -18.136 1.00131.30 O
ATOM 27 OP2 C A1171 10.494 12.362 -20.043 1.00130.98 O
ATOM 28 O5' C A1171 9.741 14.702 -20.522 1.00131.39 O
TER
ATOM 1 O3' C B1168 15.924 2.948 -17.365 1.00109.41 O
ATOM 2 P A B1169 14.865 4.134 -17.576 1.00105.23 P
ATOM 3 OP1 A B1169 13.762 3.914 -16.592 1.00106.11 O
ATOM 4 OP2 A B1169 14.535 4.174 -19.041 1.00105.48 O
ATOM 5 O5' A B1169 15.697 5.427 -17.175 1.00104.48 O
ATOM 6 C5' A B1169 15.030 6.590 -16.748 1.00104.91 C
ATOM 7 C4' A B1169 15.945 7.772 -16.716 1.00104.10 C
ATOM 8 O4' A B1169 17.158 7.485 -17.438 1.00103.19 O
ATOM 9 C3' A B1169 15.422 9.017 -17.381 1.00104.41 C
ATOM 10 O3' A B1169 14.473 9.695 -16.585 1.00105.09 O
ATOM 11 C2' A B1169 16.698 9.812 -17.656 1.00103.36 C
ATOM 12 O2' A B1169 17.114 10.528 -16.503 1.00102.98 O
ATOM 13 C1' A B1169 17.707 8.691 -17.920 1.00102.66 C
ATOM 14 N9 A B1169 18.012 8.527 -19.346 1.00102.44 N
ATOM 15 C8 A B1169 17.916 7.356 -20.038 1.00102.60 C
ATOM 16 N7 A B1169 18.264 7.462 -21.291 1.00102.32 N
ATOM 17 C5 A B1169 18.621 8.790 -21.423 1.00101.94 C
ATOM 18 C6 A B1169 19.077 9.509 -22.535 1.00101.53 C
ATOM 19 N6 A B1169 19.241 8.923 -23.723 1.00101.45 N
ATOM 20 N1 A B1169 19.345 10.829 -22.375 1.00101.22 N
ATOM 21 C2 A B1169 19.148 11.353 -21.155 1.00101.33 C
ATOM 22 N3 A B1169 18.725 10.769 -20.024 1.00101.71 N
ATOM 23 C4 A B1169 18.476 9.466 -20.231 1.00102.00 C
ATOM 24 P G B1170 12.929 9.751 -17.036 1.00115.62 P
ATOM 25 OP1 G B1170 12.114 9.906 -15.804 1.00116.24 O
ATOM 26 OP2 G B1170 12.677 8.576 -17.907 1.00115.90 O
ATOM 27 O5' G B1170 12.878 11.086 -17.896 1.00115.55 O
TER
ATOM 2 P G A1170 12.929 9.751 -17.036 1.00115.62 P
ATOM 3 OP1 G A1170 12.114 9.906 -15.804 1.00116.24 O
ATOM 4 OP2 G A1170 12.677 8.576 -17.907 1.00115.90 O
ATOM 5 O5' G A1170 12.878 11.086 -17.896 1.00115.55 O
ATOM 6 C5' G A1170 13.263 12.327 -17.334 1.00115.16 C
ATOM 7 C4' G A1170 13.865 13.233 -18.372 1.00114.62 C
ATOM 8 O4' G A1170 15.125 12.678 -18.825 1.00113.68 O
ATOM 9 C3' G A1170 13.066 13.396 -19.658 1.00115.22 C
ATOM 10 O3' G A1170 11.981 14.303 -19.546 1.00115.99 O
ATOM 11 C2' G A1170 14.139 13.814 -20.652 1.00114.35 C
ATOM 12 O2' G A1170 14.544 15.156 -20.432 1.00113.94 O
ATOM 13 C1' G A1170 15.272 12.896 -20.218 1.00113.55 C
ATOM 14 N9 G A1170 15.201 11.591 -20.905 1.00113.70 N
ATOM 15 C8 G A1170 14.593 10.426 -20.479 1.00114.26 C
ATOM 16 N7 G A1170 14.701 9.448 -21.338 1.00114.25 N
ATOM 17 C5 G A1170 15.414 10.002 -22.393 1.00113.65 C
ATOM 18 C6 G A1170 15.838 9.424 -23.615 1.00113.37 C
ATOM 19 O6 G A1170 15.654 8.254 -24.007 1.00113.60 O
ATOM 20 N1 G A1170 16.536 10.367 -24.388 1.00112.75 N
ATOM 21 C2 G A1170 16.792 11.684 -24.040 1.00112.46 C
ATOM 22 N2 G A1170 17.480 12.457 -24.902 1.00111.87 N
ATOM 23 N3 G A1170 16.391 12.219 -22.902 1.00112.73 N
ATOM 24 C4 G A1170 15.721 11.325 -22.143 1.00113.31 C
ATOM 25 P C A1171 10.468 13.747 -19.506 1.00130.90 P
ATOM 26 OP1 C A1171 9.934 13.976 -18.136 1.00131.30 O
ATOM 27 OP2 C A1171 10.494 12.362 -20.043 1.00130.98 O
ATOM 28 O5' C A1171 9.741 14.702 -20.522 1.00131.39 O
TER
ATOM 1 O3' C B1168 15.924 2.948 -17.365 1.00109.41 O
ATOM 2 P A B1169 14.865 4.134 -17.576 1.00105.23 P
ATOM 3 OP1 A B1169 13.762 3.914 -16.592 1.00106.11 O
ATOM 4 OP2 A B1169 14.535 4.174 -19.041 1.00105.48 O
ATOM 5 O5' A B1169 15.697 5.427 -17.175 1.00104.48 O
ATOM 6 C5' A B1169 15.030 6.590 -16.748 1.00104.91 C
ATOM 7 C4' A B1169 15.945 7.772 -16.716 1.00104.10 C
ATOM 8 O4' A B1169 17.158 7.485 -17.438 1.00103.19 O
ATOM 9 C3' A B1169 15.422 9.017 -17.381 1.00104.41 C
ATOM 10 O3' A B1169 14.473 9.695 -16.585 1.00105.09 O
ATOM 11 C2' A B1169 16.698 9.812 -17.656 1.00103.36 C
ATOM 12 O2' A B1169 17.114 10.528 -16.503 1.00102.98 O
ATOM 13 C1' A B1169 17.707 8.691 -17.920 1.00102.66 C
ATOM 14 N9 A B1169 18.012 8.527 -19.346 1.00102.44 N
ATOM 15 C8 A B1169 17.916 7.356 -20.038 1.00102.60 C
ATOM 16 N7 A B1169 18.264 7.462 -21.291 1.00102.32 N
ATOM 17 C5 A B1169 18.621 8.790 -21.423 1.00101.94 C
ATOM 18 C6 A B1169 19.077 9.509 -22.535 1.00101.53 C
ATOM 19 N6 A B1169 19.241 8.923 -23.723 1.00101.45 N
ATOM 20 N1 A B1169 19.345 10.829 -22.375 1.00101.22 N
ATOM 21 C2 A B1169 19.148 11.353 -21.155 1.00101.33 C
ATOM 22 N3 A B1169 18.725 10.769 -20.024 1.00101.71 N
ATOM 23 C4 A B1169 18.476 9.466 -20.231 1.00102.00 C
ATOM 24 P G B1170 12.929 9.751 -17.036 1.00115.62 P
ATOM 25 OP1 G B1170 12.114 9.906 -15.804 1.00116.24 O
ATOM 26 OP2 G B1170 12.677 8.576 -17.907 1.00115.90 O
ATOM 27 O5' G B1170 12.878 11.086 -17.896 1.00115.55 O
TER
Atoms:
OP1: (12.114,9.906,-15.804)
OP2: (12.677,8.576,-17.907)
C3': (13.066,13.396,-19.658)
C1': (15.272,12.896,-20.218)
C5': (13.263,12.327,-17.334)
O6: (15.654,8.254,-24.007)
O4': (15.125,12.678,-18.825)
C8: (14.593,10.426,-20.479)
C2: (16.792,11.684,-24.040)
C6: (15.838,9.424,-23.615)
C5: (15.414,10.002,-22.393)
C4: (15.721,11.325,-22.143)
P: (12.929,9.751,-17.036)
C4': (13.865,13.233,-18.372)
C2': (14.139,13.814,-20.652)
O2': (14.544,15.156,-20.432)
N1: (16.536,10.367,-24.388)
N2: (17.480,12.457,-24.902)
N3: (16.391,12.219,-22.902)
N7: (14.701,9.448,-21.338)
N9: (15.201,11.591,-20.905)
O5': (12.878,11.086,-17.896)
O3': (11.981,14.303,-19.546)
OP2: (12.677,8.576,-17.907)
C3': (13.066,13.396,-19.658)
C1': (15.272,12.896,-20.218)
C5': (13.263,12.327,-17.334)
O6: (15.654,8.254,-24.007)
O4': (15.125,12.678,-18.825)
C8: (14.593,10.426,-20.479)
C2: (16.792,11.684,-24.040)
C6: (15.838,9.424,-23.615)
C5: (15.414,10.002,-22.393)
C4: (15.721,11.325,-22.143)
P: (12.929,9.751,-17.036)
C4': (13.865,13.233,-18.372)
C2': (14.139,13.814,-20.652)
O2': (14.544,15.156,-20.432)
N1: (16.536,10.367,-24.388)
N2: (17.480,12.457,-24.902)
N3: (16.391,12.219,-22.902)
N7: (14.701,9.448,-21.338)
N9: (15.201,11.591,-20.905)
O5': (12.878,11.086,-17.896)
O3': (11.981,14.303,-19.546)
OP1: (13.762,3.914,-16.592)
OP2: (14.535,4.174,-19.041)
C3': (15.422,9.017,-17.381)
C1': (17.707,8.691,-17.920)
C5': (15.030,6.590,-16.748)
O4': (17.158,7.485,-17.438)
C8: (17.916,7.356,-20.038)
O2': (17.114,10.528,-16.503)
C6: (19.077,9.509,-22.535)
C5: (18.621,8.790,-21.423)
C4: (18.476,9.466,-20.231)
P: (14.865,4.134,-17.576)
C4': (15.945,7.772,-16.716)
C2': (16.698,9.812,-17.656)
C2: (19.148,11.353,-21.155)
N1: (19.345,10.829,-22.375)
N3: (18.725,10.769,-20.024)
N6: (19.241,8.923,-23.723)
N7: (18.264,7.462,-21.291)
N9: (18.012,8.527,-19.346)
O5': (15.697,5.427,-17.175)
O3': (14.473,9.695,-16.585)
OP2: (14.535,4.174,-19.041)
C3': (15.422,9.017,-17.381)
C1': (17.707,8.691,-17.920)
C5': (15.030,6.590,-16.748)
O4': (17.158,7.485,-17.438)
C8: (17.916,7.356,-20.038)
O2': (17.114,10.528,-16.503)
C6: (19.077,9.509,-22.535)
C5: (18.621,8.790,-21.423)
C4: (18.476,9.466,-20.231)
P: (14.865,4.134,-17.576)
C4': (15.945,7.772,-16.716)
C2': (16.698,9.812,-17.656)
C2: (19.148,11.353,-21.155)
N1: (19.345,10.829,-22.375)
N3: (18.725,10.769,-20.024)
N6: (19.241,8.923,-23.723)
N7: (18.264,7.462,-21.291)
N9: (18.012,8.527,-19.346)
O5': (15.697,5.427,-17.175)
O3': (14.473,9.695,-16.585)
Image (generated by PyMOL):