Doublet info:
Details
Nucleotide types:
GA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1MDG:A3:A2
Extra
PDB:
ATOM 1 O3' A A 2 -4.040 8.318 12.105 1.00 12.93 O
ATOM 2 P G A 3 -4.199 9.169 10.755 1.00 14.09 P
ATOM 3 OP1 G A 3 -4.870 10.471 11.057 1.00 15.20 O
ATOM 4 OP2 G A 3 -4.790 8.276 9.721 1.00 14.17 O
ATOM 5 O5' G A 3 -2.695 9.420 10.288 1.00 12.57 O
ATOM 6 C5' G A 3 -1.901 10.461 10.848 1.00 12.73 C
ATOM 7 C4' G A 3 -0.434 10.097 10.777 1.00 11.24 C
ATOM 8 O4' G A 3 -0.142 8.974 11.652 1.00 13.50 O
ATOM 9 C3' G A 3 0.028 9.616 9.418 1.00 12.41 C
ATOM 10 O3' G A 3 0.229 10.730 8.577 1.00 12.76 O
ATOM 11 C2' G A 3 1.296 8.854 9.777 1.00 10.27 C
ATOM 12 O2' G A 3 2.388 9.710 10.102 1.00 12.31 O
ATOM 13 C1' G A 3 0.835 8.132 11.053 1.00 9.93 C
ATOM 14 N9 G A 3 0.227 6.825 10.840 1.00 9.26 N
ATOM 15 C8 G A 3 -1.112 6.508 10.824 1.00 11.42 C
ATOM 16 N7 G A 3 -1.327 5.225 10.726 1.00 10.86 N
ATOM 17 C5 G A 3 -0.058 4.671 10.640 1.00 10.25 C
ATOM 18 C6 G A 3 0.342 3.320 10.590 1.00 10.31 C
ATOM 19 O6 G A 3 -0.379 2.315 10.605 1.00 9.85 O
ATOM 20 N1 G A 3 1.729 3.194 10.531 1.00 11.27 N
ATOM 21 C2 G A 3 2.618 4.257 10.505 1.00 8.01 C
ATOM 22 N2 G A 3 3.928 3.912 10.401 1.00 10.53 N
ATOM 23 N3 G A 3 2.252 5.520 10.568 1.00 11.05 N
ATOM 24 C4 G A 3 0.907 5.652 10.662 1.00 8.38 C
ATOM 25 P G A 4 -0.032 10.580 6.994 1.00 14.17 P
ATOM 26 OP1 G A 4 0.110 11.998 6.602 1.00 16.98 O
ATOM 27 OP2 G A 4 -1.274 9.842 6.735 1.00 16.51 O
ATOM 28 O5' G A 4 1.180 9.730 6.491 1.00 12.32 O
TER
ATOM 1 P A B 2 -8.373 8.194 15.685 1.00 12.90 P
ATOM 2 OP1 A B 2 -8.386 9.640 16.013 1.00 15.91 O
ATOM 3 OP2 A B 2 -9.501 7.568 14.958 1.00 13.39 O
ATOM 4 O5' A B 2 -7.035 7.914 14.848 1.00 13.04 O
ATOM 5 C5' A B 2 -5.730 8.391 15.242 1.00 12.88 C
ATOM 6 C4' A B 2 -4.710 7.770 14.307 1.00 12.95 C
ATOM 7 O4' A B 2 -4.585 6.362 14.576 1.00 12.14 O
ATOM 8 C3' A B 2 -5.188 7.901 12.853 1.00 11.96 C
ATOM 9 O3' A B 2 -4.040 8.318 12.105 1.00 12.93 O
ATOM 10 C2' A B 2 -5.592 6.492 12.457 1.00 10.33 C
ATOM 11 O2' A B 2 -5.535 6.104 11.093 1.00 13.94 O
ATOM 12 C1' A B 2 -4.661 5.672 13.339 1.00 11.59 C
ATOM 13 N9 A B 2 -5.092 4.313 13.573 1.00 9.12 N
ATOM 14 C8 A B 2 -6.341 3.792 13.648 1.00 9.33 C
ATOM 15 N7 A B 2 -6.353 2.517 13.874 1.00 9.91 N
ATOM 16 C5 A B 2 -5.015 2.171 13.917 1.00 9.78 C
ATOM 17 C6 A B 2 -4.382 0.946 14.044 1.00 12.03 C
ATOM 18 N6 A B 2 -5.049 -0.209 14.192 1.00 11.88 N
ATOM 19 N1 A B 2 -3.031 0.935 14.023 1.00 10.48 N
ATOM 20 C2 A B 2 -2.378 2.113 13.875 1.00 8.22 C
ATOM 21 N3 A B 2 -2.879 3.320 13.753 1.00 11.14 N
ATOM 22 C4 A B 2 -4.223 3.273 13.769 1.00 10.21 C
ATOM 23 P G B 3 -4.199 9.169 10.755 1.00 14.09 P
ATOM 24 OP1 G B 3 -4.870 10.471 11.057 1.00 15.20 O
ATOM 25 OP2 G B 3 -4.790 8.276 9.721 1.00 14.17 O
ATOM 26 O5' G B 3 -2.695 9.420 10.288 1.00 12.57 O
TER
ATOM 2 P G A 3 -4.199 9.169 10.755 1.00 14.09 P
ATOM 3 OP1 G A 3 -4.870 10.471 11.057 1.00 15.20 O
ATOM 4 OP2 G A 3 -4.790 8.276 9.721 1.00 14.17 O
ATOM 5 O5' G A 3 -2.695 9.420 10.288 1.00 12.57 O
ATOM 6 C5' G A 3 -1.901 10.461 10.848 1.00 12.73 C
ATOM 7 C4' G A 3 -0.434 10.097 10.777 1.00 11.24 C
ATOM 8 O4' G A 3 -0.142 8.974 11.652 1.00 13.50 O
ATOM 9 C3' G A 3 0.028 9.616 9.418 1.00 12.41 C
ATOM 10 O3' G A 3 0.229 10.730 8.577 1.00 12.76 O
ATOM 11 C2' G A 3 1.296 8.854 9.777 1.00 10.27 C
ATOM 12 O2' G A 3 2.388 9.710 10.102 1.00 12.31 O
ATOM 13 C1' G A 3 0.835 8.132 11.053 1.00 9.93 C
ATOM 14 N9 G A 3 0.227 6.825 10.840 1.00 9.26 N
ATOM 15 C8 G A 3 -1.112 6.508 10.824 1.00 11.42 C
ATOM 16 N7 G A 3 -1.327 5.225 10.726 1.00 10.86 N
ATOM 17 C5 G A 3 -0.058 4.671 10.640 1.00 10.25 C
ATOM 18 C6 G A 3 0.342 3.320 10.590 1.00 10.31 C
ATOM 19 O6 G A 3 -0.379 2.315 10.605 1.00 9.85 O
ATOM 20 N1 G A 3 1.729 3.194 10.531 1.00 11.27 N
ATOM 21 C2 G A 3 2.618 4.257 10.505 1.00 8.01 C
ATOM 22 N2 G A 3 3.928 3.912 10.401 1.00 10.53 N
ATOM 23 N3 G A 3 2.252 5.520 10.568 1.00 11.05 N
ATOM 24 C4 G A 3 0.907 5.652 10.662 1.00 8.38 C
ATOM 25 P G A 4 -0.032 10.580 6.994 1.00 14.17 P
ATOM 26 OP1 G A 4 0.110 11.998 6.602 1.00 16.98 O
ATOM 27 OP2 G A 4 -1.274 9.842 6.735 1.00 16.51 O
ATOM 28 O5' G A 4 1.180 9.730 6.491 1.00 12.32 O
TER
ATOM 1 P A B 2 -8.373 8.194 15.685 1.00 12.90 P
ATOM 2 OP1 A B 2 -8.386 9.640 16.013 1.00 15.91 O
ATOM 3 OP2 A B 2 -9.501 7.568 14.958 1.00 13.39 O
ATOM 4 O5' A B 2 -7.035 7.914 14.848 1.00 13.04 O
ATOM 5 C5' A B 2 -5.730 8.391 15.242 1.00 12.88 C
ATOM 6 C4' A B 2 -4.710 7.770 14.307 1.00 12.95 C
ATOM 7 O4' A B 2 -4.585 6.362 14.576 1.00 12.14 O
ATOM 8 C3' A B 2 -5.188 7.901 12.853 1.00 11.96 C
ATOM 9 O3' A B 2 -4.040 8.318 12.105 1.00 12.93 O
ATOM 10 C2' A B 2 -5.592 6.492 12.457 1.00 10.33 C
ATOM 11 O2' A B 2 -5.535 6.104 11.093 1.00 13.94 O
ATOM 12 C1' A B 2 -4.661 5.672 13.339 1.00 11.59 C
ATOM 13 N9 A B 2 -5.092 4.313 13.573 1.00 9.12 N
ATOM 14 C8 A B 2 -6.341 3.792 13.648 1.00 9.33 C
ATOM 15 N7 A B 2 -6.353 2.517 13.874 1.00 9.91 N
ATOM 16 C5 A B 2 -5.015 2.171 13.917 1.00 9.78 C
ATOM 17 C6 A B 2 -4.382 0.946 14.044 1.00 12.03 C
ATOM 18 N6 A B 2 -5.049 -0.209 14.192 1.00 11.88 N
ATOM 19 N1 A B 2 -3.031 0.935 14.023 1.00 10.48 N
ATOM 20 C2 A B 2 -2.378 2.113 13.875 1.00 8.22 C
ATOM 21 N3 A B 2 -2.879 3.320 13.753 1.00 11.14 N
ATOM 22 C4 A B 2 -4.223 3.273 13.769 1.00 10.21 C
ATOM 23 P G B 3 -4.199 9.169 10.755 1.00 14.09 P
ATOM 24 OP1 G B 3 -4.870 10.471 11.057 1.00 15.20 O
ATOM 25 OP2 G B 3 -4.790 8.276 9.721 1.00 14.17 O
ATOM 26 O5' G B 3 -2.695 9.420 10.288 1.00 12.57 O
TER
Atoms:
OP1: (-4.870,10.471,11.057)
OP2: (-4.790,8.276,9.721)
C3': (0.028,9.616,9.418)
C1': (0.835,8.132,11.053)
C5': (-1.901,10.461,10.848)
O6: (-0.379,2.315,10.605)
O4': (-0.142,8.974,11.652)
C8: (-1.112,6.508,10.824)
C2: (2.618,4.257,10.505)
C6: (0.342,3.320,10.590)
C5: (-0.058,4.671,10.640)
C4: (0.907,5.652,10.662)
P: (-4.199,9.169,10.755)
C4': (-0.434,10.097,10.777)
C2': (1.296,8.854,9.777)
O2': (2.388,9.710,10.102)
N1: (1.729,3.194,10.531)
N2: (3.928,3.912,10.401)
N3: (2.252,5.520,10.568)
N7: (-1.327,5.225,10.726)
N9: (0.227,6.825,10.840)
O5': (-2.695,9.420,10.288)
O3': (0.229,10.730,8.577)
OP2: (-4.790,8.276,9.721)
C3': (0.028,9.616,9.418)
C1': (0.835,8.132,11.053)
C5': (-1.901,10.461,10.848)
O6: (-0.379,2.315,10.605)
O4': (-0.142,8.974,11.652)
C8: (-1.112,6.508,10.824)
C2: (2.618,4.257,10.505)
C6: (0.342,3.320,10.590)
C5: (-0.058,4.671,10.640)
C4: (0.907,5.652,10.662)
P: (-4.199,9.169,10.755)
C4': (-0.434,10.097,10.777)
C2': (1.296,8.854,9.777)
O2': (2.388,9.710,10.102)
N1: (1.729,3.194,10.531)
N2: (3.928,3.912,10.401)
N3: (2.252,5.520,10.568)
N7: (-1.327,5.225,10.726)
N9: (0.227,6.825,10.840)
O5': (-2.695,9.420,10.288)
O3': (0.229,10.730,8.577)
OP1: (-8.386,9.640,16.013)
OP2: (-9.501,7.568,14.958)
C3': (-5.188,7.901,12.853)
C1': (-4.661,5.672,13.339)
C5': (-5.730,8.391,15.242)
O4': (-4.585,6.362,14.576)
C8: (-6.341,3.792,13.648)
O2': (-5.535,6.104,11.093)
C6: (-4.382,0.946,14.044)
C5: (-5.015,2.171,13.917)
C4: (-4.223,3.273,13.769)
P: (-8.373,8.194,15.685)
C4': (-4.710,7.770,14.307)
C2': (-5.592,6.492,12.457)
C2: (-2.378,2.113,13.875)
N1: (-3.031,0.935,14.023)
N3: (-2.879,3.320,13.753)
N6: (-5.049,-0.209,14.192)
N7: (-6.353,2.517,13.874)
N9: (-5.092,4.313,13.573)
O5': (-7.035,7.914,14.848)
O3': (-4.040,8.318,12.105)
OP2: (-9.501,7.568,14.958)
C3': (-5.188,7.901,12.853)
C1': (-4.661,5.672,13.339)
C5': (-5.730,8.391,15.242)
O4': (-4.585,6.362,14.576)
C8: (-6.341,3.792,13.648)
O2': (-5.535,6.104,11.093)
C6: (-4.382,0.946,14.044)
C5: (-5.015,2.171,13.917)
C4: (-4.223,3.273,13.769)
P: (-8.373,8.194,15.685)
C4': (-4.710,7.770,14.307)
C2': (-5.592,6.492,12.457)
C2: (-2.378,2.113,13.875)
N1: (-3.031,0.935,14.023)
N3: (-2.879,3.320,13.753)
N6: (-5.049,-0.209,14.192)
N7: (-6.353,2.517,13.874)
N9: (-5.092,4.313,13.573)
O5': (-7.035,7.914,14.848)
O3': (-4.040,8.318,12.105)
Image (generated by PyMOL):