Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1497:1498
Extra
PDB:
ATOM 1 O3' G A 496 36.161 -3.341 -42.431 1.00146.88 O
ATOM 2 P U A 497 36.463 -4.518 -41.382 1.00124.39 P
ATOM 3 OP1 U A 497 35.306 -5.438 -41.423 1.00124.56 O
ATOM 4 OP2 U A 497 36.827 -3.883 -40.085 1.00123.47 O
ATOM 5 O5' U A 497 37.737 -5.227 -42.016 1.00124.70 O
ATOM 6 C5' U A 497 37.606 -6.036 -43.168 1.00125.51 C
ATOM 7 C4' U A 497 38.382 -5.482 -44.333 1.00126.23 C
ATOM 8 O4' U A 497 38.562 -4.049 -44.196 1.00126.10 O
ATOM 9 C3' U A 497 39.791 -6.001 -44.495 1.00126.21 C
ATOM 10 O3' U A 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 11 C2' U A 497 40.437 -4.933 -45.369 1.00126.75 C
ATOM 12 O2' U A 497 40.087 -5.112 -46.734 1.00127.74 O
ATOM 13 C1' U A 497 39.759 -3.661 -44.849 1.00126.43 C
ATOM 14 N1 U A 497 40.621 -2.917 -43.883 1.00125.68 N
ATOM 15 C2 U A 497 41.863 -2.433 -44.317 1.00125.87 C
ATOM 16 O2 U A 497 42.291 -2.585 -45.463 1.00126.63 O
ATOM 17 N3 U A 497 42.595 -1.753 -43.350 1.00125.14 N
ATOM 18 C4 U A 497 42.234 -1.495 -42.035 1.00124.28 C
ATOM 19 O4 U A 497 42.994 -0.862 -41.291 1.00123.72 O
ATOM 20 C5 U A 497 40.950 -2.015 -41.668 1.00124.14 C
ATOM 21 C6 U A 497 40.216 -2.684 -42.575 1.00124.82 C
ATOM 22 P A A 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 23 OP1 A A 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 24 OP2 A A 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 25 O5' A A 498 42.166 -7.905 -44.388 1.00132.52 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
ATOM 2 P U A 497 36.463 -4.518 -41.382 1.00124.39 P
ATOM 3 OP1 U A 497 35.306 -5.438 -41.423 1.00124.56 O
ATOM 4 OP2 U A 497 36.827 -3.883 -40.085 1.00123.47 O
ATOM 5 O5' U A 497 37.737 -5.227 -42.016 1.00124.70 O
ATOM 6 C5' U A 497 37.606 -6.036 -43.168 1.00125.51 C
ATOM 7 C4' U A 497 38.382 -5.482 -44.333 1.00126.23 C
ATOM 8 O4' U A 497 38.562 -4.049 -44.196 1.00126.10 O
ATOM 9 C3' U A 497 39.791 -6.001 -44.495 1.00126.21 C
ATOM 10 O3' U A 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 11 C2' U A 497 40.437 -4.933 -45.369 1.00126.75 C
ATOM 12 O2' U A 497 40.087 -5.112 -46.734 1.00127.74 O
ATOM 13 C1' U A 497 39.759 -3.661 -44.849 1.00126.43 C
ATOM 14 N1 U A 497 40.621 -2.917 -43.883 1.00125.68 N
ATOM 15 C2 U A 497 41.863 -2.433 -44.317 1.00125.87 C
ATOM 16 O2 U A 497 42.291 -2.585 -45.463 1.00126.63 O
ATOM 17 N3 U A 497 42.595 -1.753 -43.350 1.00125.14 N
ATOM 18 C4 U A 497 42.234 -1.495 -42.035 1.00124.28 C
ATOM 19 O4 U A 497 42.994 -0.862 -41.291 1.00123.72 O
ATOM 20 C5 U A 497 40.950 -2.015 -41.668 1.00124.14 C
ATOM 21 C6 U A 497 40.216 -2.684 -42.575 1.00124.82 C
ATOM 22 P A A 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 23 OP1 A A 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 24 OP2 A A 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 25 O5' A A 498 42.166 -7.905 -44.388 1.00132.52 O
TER
ATOM 1 O3' U B 497 39.834 -7.297 -45.054 1.00126.63 O
ATOM 2 P A B 498 40.675 -8.461 -44.330 1.00132.62 P
ATOM 3 OP1 A B 498 40.558 -9.681 -45.179 1.00133.28 O
ATOM 4 OP2 A B 498 40.214 -8.523 -42.913 1.00131.69 O
ATOM 5 O5' A B 498 42.166 -7.905 -44.388 1.00132.52 O
ATOM 6 C5' A B 498 42.791 -7.615 -45.630 1.00133.32 C
ATOM 7 C4' A B 498 44.038 -6.808 -45.423 1.00133.06 C
ATOM 8 O4' A B 498 43.702 -5.576 -44.748 1.00132.58 O
ATOM 9 C3' A B 498 45.094 -7.461 -44.553 1.00132.39 C
ATOM 10 O3' A B 498 45.960 -8.283 -45.308 1.00132.88 O
ATOM 11 C2' A B 498 45.808 -6.282 -43.910 1.00131.86 C
ATOM 12 O2' A B 498 46.833 -5.802 -44.769 1.00132.38 O
ATOM 13 C1' A B 498 44.703 -5.228 -43.836 1.00131.87 C
ATOM 14 N9 A B 498 44.088 -5.125 -42.504 1.00131.00 N
ATOM 15 C8 A B 498 43.027 -5.841 -42.008 1.00130.76 C
ATOM 16 N7 A B 498 42.676 -5.483 -40.795 1.00129.96 N
ATOM 17 C5 A B 498 43.558 -4.449 -40.488 1.00129.67 C
ATOM 18 C6 A B 498 43.723 -3.633 -39.351 1.00128.90 C
ATOM 19 N6 A B 498 42.961 -3.740 -38.259 1.00128.24 N
ATOM 20 N1 A B 498 44.700 -2.691 -39.372 1.00128.84 N
ATOM 21 C2 A B 498 45.468 -2.578 -40.461 1.00129.51 C
ATOM 22 N3 A B 498 45.409 -3.286 -41.587 1.00130.27 N
ATOM 23 C4 A B 498 44.427 -4.211 -41.537 1.00130.31 C
ATOM 24 P U B 499 46.293 -9.777 -44.836 1.00107.80 P
ATOM 25 OP1 U B 499 47.443 -10.246 -45.663 1.00108.33 O
ATOM 26 OP2 U B 499 45.027 -10.545 -44.863 1.00107.94 O
ATOM 27 O5' U B 499 46.762 -9.587 -43.331 1.00106.73 O
TER
Atoms:
C4: (42.234,-1.495,-42.035)
N3: (42.595,-1.753,-43.350)
OP1: (35.306,-5.438,-41.423)
OP2: (36.827,-3.883,-40.085)
C2: (41.863,-2.433,-44.317)
C1': (39.759,-3.661,-44.849)
C3': (39.791,-6.001,-44.495)
O5': (37.737,-5.227,-42.016)
O4': (38.562,-4.049,-44.196)
C5': (37.606,-6.036,-43.168)
P: (36.463,-4.518,-41.382)
C4': (38.382,-5.482,-44.333)
C2': (40.437,-4.933,-45.369)
O2': (40.087,-5.112,-46.734)
N1: (40.621,-2.917,-43.883)
O4: (42.994,-0.862,-41.291)
O2: (42.291,-2.585,-45.463)
C6: (40.216,-2.684,-42.575)
C5: (40.950,-2.015,-41.668)
O3': (39.834,-7.297,-45.054)
N3: (42.595,-1.753,-43.350)
OP1: (35.306,-5.438,-41.423)
OP2: (36.827,-3.883,-40.085)
C2: (41.863,-2.433,-44.317)
C1': (39.759,-3.661,-44.849)
C3': (39.791,-6.001,-44.495)
O5': (37.737,-5.227,-42.016)
O4': (38.562,-4.049,-44.196)
C5': (37.606,-6.036,-43.168)
P: (36.463,-4.518,-41.382)
C4': (38.382,-5.482,-44.333)
C2': (40.437,-4.933,-45.369)
O2': (40.087,-5.112,-46.734)
N1: (40.621,-2.917,-43.883)
O4: (42.994,-0.862,-41.291)
O2: (42.291,-2.585,-45.463)
C6: (40.216,-2.684,-42.575)
C5: (40.950,-2.015,-41.668)
O3': (39.834,-7.297,-45.054)
OP1: (40.558,-9.681,-45.179)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
OP2: (40.214,-8.523,-42.913)
C3': (45.094,-7.461,-44.553)
C1': (44.703,-5.228,-43.836)
C5': (42.791,-7.615,-45.630)
O4': (43.702,-5.576,-44.748)
C8: (43.027,-5.841,-42.008)
O2': (46.833,-5.802,-44.769)
C6: (43.723,-3.633,-39.351)
C5: (43.558,-4.449,-40.488)
C4: (44.427,-4.211,-41.537)
P: (40.675,-8.461,-44.330)
C4': (44.038,-6.808,-45.423)
C2': (45.808,-6.282,-43.910)
C2: (45.468,-2.578,-40.461)
N1: (44.700,-2.691,-39.372)
N3: (45.409,-3.286,-41.587)
N6: (42.961,-3.740,-38.259)
N7: (42.676,-5.483,-40.795)
N9: (44.088,-5.125,-42.504)
O5': (42.166,-7.905,-44.388)
O3': (45.960,-8.283,-45.308)
Image (generated by PyMOL):