Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0221:0222
Extra
PDB:
ATOM 1 O3' A A 220 48.677 102.134 22.150 1.00 53.76 O
ATOM 2 P U A 221 48.955 102.941 20.796 1.00 52.48 P
ATOM 3 OP1 U A 221 47.616 103.377 20.307 1.00 50.96 O
ATOM 4 OP2 U A 221 49.852 102.147 19.916 1.00 48.51 O
ATOM 5 O5' U A 221 49.750 104.221 21.296 1.00 52.95 O
ATOM 6 C5' U A 221 49.152 105.128 22.244 1.00 52.74 C
ATOM 7 C4' U A 221 50.163 106.151 22.679 1.00 52.39 C
ATOM 8 O4' U A 221 51.215 105.517 23.447 1.00 53.27 O
ATOM 9 C3' U A 221 50.907 106.819 21.544 1.00 51.79 C
ATOM 10 O3' U A 221 50.102 107.856 21.020 1.00 53.52 O
ATOM 11 C2' U A 221 52.154 107.333 22.244 1.00 50.56 C
ATOM 12 O2' U A 221 51.874 108.483 23.013 1.00 51.20 O
ATOM 13 C1' U A 221 52.439 106.191 23.222 1.00 49.88 C
ATOM 14 N1 U A 221 53.442 105.214 22.772 1.00 47.42 N
ATOM 15 C2 U A 221 54.783 105.503 23.018 1.00 48.07 C
ATOM 16 O2 U A 221 55.155 106.513 23.599 1.00 48.94 O
ATOM 17 N3 U A 221 55.673 104.564 22.562 1.00 45.89 N
ATOM 18 C4 U A 221 55.373 103.391 21.911 1.00 45.23 C
ATOM 19 O4 U A 221 56.290 102.668 21.523 1.00 44.38 O
ATOM 20 C5 U A 221 53.972 103.156 21.709 1.00 45.46 C
ATOM 21 C6 U A 221 53.079 104.055 22.133 1.00 45.53 C
ATOM 22 P A A 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 23 OP1 A A 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 24 OP2 A A 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 25 O5' A A 222 51.433 108.494 18.998 1.00 55.70 O
TER
ATOM 1 O3' U B 221 50.102 107.856 21.020 1.00 53.52 O
ATOM 2 P A B 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 3 OP1 A B 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 4 OP2 A B 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 5 O5' A B 222 51.433 108.494 18.998 1.00 55.70 O
ATOM 6 C5' A B 222 51.969 109.755 19.432 1.00 54.73 C
ATOM 7 C4' A B 222 53.451 109.781 19.204 1.00 53.43 C
ATOM 8 O4' A B 222 54.049 108.699 19.964 1.00 52.90 O
ATOM 9 C3' A B 222 53.890 109.488 17.781 1.00 54.07 C
ATOM 10 O3' A B 222 53.778 110.622 16.928 1.00 56.42 O
ATOM 11 C2' A B 222 55.325 109.017 17.982 1.00 52.38 C
ATOM 12 O2' A B 222 56.256 110.061 18.175 1.00 50.96 O
ATOM 13 C1' A B 222 55.187 108.214 19.273 1.00 51.86 C
ATOM 14 N9 A B 222 55.014 106.789 19.014 1.00 49.57 N
ATOM 15 C8 A B 222 53.868 106.054 18.843 1.00 48.94 C
ATOM 16 N7 A B 222 54.092 104.777 18.627 1.00 49.93 N
ATOM 17 C5 A B 222 55.480 104.671 18.660 1.00 48.81 C
ATOM 18 C6 A B 222 56.361 103.579 18.513 1.00 49.80 C
ATOM 19 N6 A B 222 55.969 102.321 18.291 1.00 52.33 N
ATOM 20 N1 A B 222 57.685 103.827 18.603 1.00 48.30 N
ATOM 21 C2 A B 222 58.086 105.080 18.822 1.00 46.08 C
ATOM 22 N3 A B 222 57.365 106.177 18.980 1.00 45.78 N
ATOM 23 C4 A B 222 56.055 105.902 18.889 1.00 48.18 C
ATOM 24 P C B 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 25 OP1 C B 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 26 OP2 C B 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 27 O5' C B 223 55.587 109.892 15.337 1.00 59.76 O
TER
ATOM 2 P U A 221 48.955 102.941 20.796 1.00 52.48 P
ATOM 3 OP1 U A 221 47.616 103.377 20.307 1.00 50.96 O
ATOM 4 OP2 U A 221 49.852 102.147 19.916 1.00 48.51 O
ATOM 5 O5' U A 221 49.750 104.221 21.296 1.00 52.95 O
ATOM 6 C5' U A 221 49.152 105.128 22.244 1.00 52.74 C
ATOM 7 C4' U A 221 50.163 106.151 22.679 1.00 52.39 C
ATOM 8 O4' U A 221 51.215 105.517 23.447 1.00 53.27 O
ATOM 9 C3' U A 221 50.907 106.819 21.544 1.00 51.79 C
ATOM 10 O3' U A 221 50.102 107.856 21.020 1.00 53.52 O
ATOM 11 C2' U A 221 52.154 107.333 22.244 1.00 50.56 C
ATOM 12 O2' U A 221 51.874 108.483 23.013 1.00 51.20 O
ATOM 13 C1' U A 221 52.439 106.191 23.222 1.00 49.88 C
ATOM 14 N1 U A 221 53.442 105.214 22.772 1.00 47.42 N
ATOM 15 C2 U A 221 54.783 105.503 23.018 1.00 48.07 C
ATOM 16 O2 U A 221 55.155 106.513 23.599 1.00 48.94 O
ATOM 17 N3 U A 221 55.673 104.564 22.562 1.00 45.89 N
ATOM 18 C4 U A 221 55.373 103.391 21.911 1.00 45.23 C
ATOM 19 O4 U A 221 56.290 102.668 21.523 1.00 44.38 O
ATOM 20 C5 U A 221 53.972 103.156 21.709 1.00 45.46 C
ATOM 21 C6 U A 221 53.079 104.055 22.133 1.00 45.53 C
ATOM 22 P A A 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 23 OP1 A A 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 24 OP2 A A 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 25 O5' A A 222 51.433 108.494 18.998 1.00 55.70 O
TER
ATOM 1 O3' U B 221 50.102 107.856 21.020 1.00 53.52 O
ATOM 2 P A B 222 49.974 108.037 19.434 1.00 55.19 P
ATOM 3 OP1 A B 222 49.016 109.161 19.219 1.00 52.19 O
ATOM 4 OP2 A B 222 49.722 106.713 18.797 1.00 54.31 O
ATOM 5 O5' A B 222 51.433 108.494 18.998 1.00 55.70 O
ATOM 6 C5' A B 222 51.969 109.755 19.432 1.00 54.73 C
ATOM 7 C4' A B 222 53.451 109.781 19.204 1.00 53.43 C
ATOM 8 O4' A B 222 54.049 108.699 19.964 1.00 52.90 O
ATOM 9 C3' A B 222 53.890 109.488 17.781 1.00 54.07 C
ATOM 10 O3' A B 222 53.778 110.622 16.928 1.00 56.42 O
ATOM 11 C2' A B 222 55.325 109.017 17.982 1.00 52.38 C
ATOM 12 O2' A B 222 56.256 110.061 18.175 1.00 50.96 O
ATOM 13 C1' A B 222 55.187 108.214 19.273 1.00 51.86 C
ATOM 14 N9 A B 222 55.014 106.789 19.014 1.00 49.57 N
ATOM 15 C8 A B 222 53.868 106.054 18.843 1.00 48.94 C
ATOM 16 N7 A B 222 54.092 104.777 18.627 1.00 49.93 N
ATOM 17 C5 A B 222 55.480 104.671 18.660 1.00 48.81 C
ATOM 18 C6 A B 222 56.361 103.579 18.513 1.00 49.80 C
ATOM 19 N6 A B 222 55.969 102.321 18.291 1.00 52.33 N
ATOM 20 N1 A B 222 57.685 103.827 18.603 1.00 48.30 N
ATOM 21 C2 A B 222 58.086 105.080 18.822 1.00 46.08 C
ATOM 22 N3 A B 222 57.365 106.177 18.980 1.00 45.78 N
ATOM 23 C4 A B 222 56.055 105.902 18.889 1.00 48.18 C
ATOM 24 P C B 223 54.101 110.475 15.357 1.00 59.64 P
ATOM 25 OP1 C B 223 54.129 111.854 14.805 1.00 59.71 O
ATOM 26 OP2 C B 223 53.192 109.464 14.761 1.00 60.09 O
ATOM 27 O5' C B 223 55.587 109.892 15.337 1.00 59.76 O
TER
Atoms:
C4: (55.373,103.391,21.911)
N3: (55.673,104.564,22.562)
OP1: (47.616,103.377,20.307)
OP2: (49.852,102.147,19.916)
C2: (54.783,105.503,23.018)
C1': (52.439,106.191,23.222)
C3': (50.907,106.819,21.544)
O5': (49.750,104.221,21.296)
O4': (51.215,105.517,23.447)
C5': (49.152,105.128,22.244)
P: (48.955,102.941,20.796)
C4': (50.163,106.151,22.679)
C2': (52.154,107.333,22.244)
O2': (51.874,108.483,23.013)
N1: (53.442,105.214,22.772)
O4: (56.290,102.668,21.523)
O2: (55.155,106.513,23.599)
C6: (53.079,104.055,22.133)
C5: (53.972,103.156,21.709)
O3': (50.102,107.856,21.020)
N3: (55.673,104.564,22.562)
OP1: (47.616,103.377,20.307)
OP2: (49.852,102.147,19.916)
C2: (54.783,105.503,23.018)
C1': (52.439,106.191,23.222)
C3': (50.907,106.819,21.544)
O5': (49.750,104.221,21.296)
O4': (51.215,105.517,23.447)
C5': (49.152,105.128,22.244)
P: (48.955,102.941,20.796)
C4': (50.163,106.151,22.679)
C2': (52.154,107.333,22.244)
O2': (51.874,108.483,23.013)
N1: (53.442,105.214,22.772)
O4: (56.290,102.668,21.523)
O2: (55.155,106.513,23.599)
C6: (53.079,104.055,22.133)
C5: (53.972,103.156,21.709)
O3': (50.102,107.856,21.020)
OP1: (49.016,109.161,19.219)
OP2: (49.722,106.713,18.797)
C3': (53.890,109.488,17.781)
C1': (55.187,108.214,19.273)
C5': (51.969,109.755,19.432)
O4': (54.049,108.699,19.964)
C8: (53.868,106.054,18.843)
O2': (56.256,110.061,18.175)
C6: (56.361,103.579,18.513)
C5: (55.480,104.671,18.660)
C4: (56.055,105.902,18.889)
P: (49.974,108.037,19.434)
C4': (53.451,109.781,19.204)
C2': (55.325,109.017,17.982)
C2: (58.086,105.080,18.822)
N1: (57.685,103.827,18.603)
N3: (57.365,106.177,18.980)
N6: (55.969,102.321,18.291)
N7: (54.092,104.777,18.627)
N9: (55.014,106.789,19.014)
O5': (51.433,108.494,18.998)
O3': (53.778,110.622,16.928)
OP2: (49.722,106.713,18.797)
C3': (53.890,109.488,17.781)
C1': (55.187,108.214,19.273)
C5': (51.969,109.755,19.432)
O4': (54.049,108.699,19.964)
C8: (53.868,106.054,18.843)
O2': (56.256,110.061,18.175)
C6: (56.361,103.579,18.513)
C5: (55.480,104.671,18.660)
C4: (56.055,105.902,18.889)
P: (49.974,108.037,19.434)
C4': (53.451,109.781,19.204)
C2': (55.325,109.017,17.982)
C2: (58.086,105.080,18.822)
N1: (57.685,103.827,18.603)
N3: (57.365,106.177,18.980)
N6: (55.969,102.321,18.291)
N7: (54.092,104.777,18.627)
N9: (55.014,106.789,19.014)
O5': (51.433,108.494,18.998)
O3': (53.778,110.622,16.928)
Image (generated by PyMOL):