Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0547:0548
Extra
PDB:
ATOM 1 O3' C A 546 -8.988 117.409 102.848 1.00 84.89 O
ATOM 2 P U A 547 -9.327 115.857 103.126 1.00 86.63 P
ATOM 3 OP1 U A 547 -8.487 115.414 104.266 1.00 85.88 O
ATOM 4 OP2 U A 547 -9.270 115.112 101.842 1.00 84.90 O
ATOM 5 O5' U A 547 -10.849 115.871 103.602 1.00 86.70 O
ATOM 6 C5' U A 547 -11.837 116.578 102.840 1.00 85.94 C
ATOM 7 C4' U A 547 -13.229 116.294 103.344 1.00 85.97 C
ATOM 8 O4' U A 547 -14.159 117.017 102.489 1.00 86.63 O
ATOM 9 C3' U A 547 -13.660 114.833 103.276 1.00 85.49 C
ATOM 10 O3' U A 547 -13.431 114.149 104.504 1.00 82.85 O
ATOM 11 C2' U A 547 -15.131 114.924 102.893 1.00 86.15 C
ATOM 12 O2' U A 547 -15.964 115.219 103.996 1.00 86.42 O
ATOM 13 C1' U A 547 -15.103 116.118 101.937 1.00 86.82 C
ATOM 14 N1 U A 547 -14.677 115.784 100.565 1.00 87.33 N
ATOM 15 C2 U A 547 -15.654 115.677 99.589 1.00 88.85 C
ATOM 16 O2 U A 547 -16.840 115.867 99.805 1.00 90.36 O
ATOM 17 N3 U A 547 -15.190 115.342 98.340 1.00 89.52 N
ATOM 18 C4 U A 547 -13.879 115.118 97.971 1.00 89.58 C
ATOM 19 O4 U A 547 -13.623 114.778 96.815 1.00 89.50 O
ATOM 20 C5 U A 547 -12.932 115.262 99.028 1.00 89.07 C
ATOM 21 C6 U A 547 -13.350 115.578 100.254 1.00 87.94 C
ATOM 22 P U A 548 -13.163 112.564 104.499 1.00 82.06 P
ATOM 23 OP1 U A 548 -13.313 112.108 105.901 1.00 81.86 O
ATOM 24 OP2 U A 548 -11.889 112.303 103.778 1.00 82.83 O
ATOM 25 O5' U A 548 -14.362 111.965 103.631 1.00 80.13 O
TER
ATOM 1 O3' U B 547 -13.431 114.149 104.504 1.00 82.85 O
ATOM 2 P U B 548 -13.163 112.564 104.499 1.00 82.06 P
ATOM 3 OP1 U B 548 -13.313 112.108 105.901 1.00 81.86 O
ATOM 4 OP2 U B 548 -11.889 112.303 103.778 1.00 82.83 O
ATOM 5 O5' U B 548 -14.362 111.965 103.631 1.00 80.13 O
ATOM 6 C5' U B 548 -15.716 111.984 104.122 1.00 78.30 C
ATOM 7 C4' U B 548 -16.675 111.467 103.071 1.00 77.41 C
ATOM 8 O4' U B 548 -16.667 112.353 101.923 1.00 76.91 O
ATOM 9 C3' U B 548 -16.370 110.099 102.481 1.00 76.24 C
ATOM 10 O3' U B 548 -16.809 109.019 103.292 1.00 74.70 O
ATOM 11 C2' U B 548 -17.122 110.142 101.164 1.00 76.67 C
ATOM 12 O2' U B 548 -18.502 109.891 101.306 1.00 75.84 O
ATOM 13 C1' U B 548 -16.886 111.595 100.739 1.00 78.16 C
ATOM 14 N1 U B 548 -15.701 111.705 99.877 1.00 80.10 N
ATOM 15 C2 U B 548 -15.849 111.440 98.520 1.00 80.60 C
ATOM 16 O2 U B 548 -16.920 111.160 98.007 1.00 80.13 O
ATOM 17 N3 U B 548 -14.689 111.509 97.788 1.00 81.89 N
ATOM 18 C4 U B 548 -13.419 111.812 98.254 1.00 82.02 C
ATOM 19 O4 U B 548 -12.464 111.769 97.478 1.00 82.35 O
ATOM 20 C5 U B 548 -13.349 112.098 99.655 1.00 81.68 C
ATOM 21 C6 U B 548 -14.460 112.042 100.397 1.00 80.92 C
ATOM 22 P G B 549 -16.117 107.578 103.125 1.00 74.01 P
ATOM 23 OP1 G B 549 -16.750 106.650 104.100 1.00 73.86 O
ATOM 24 OP2 G B 549 -14.643 107.774 103.152 1.00 72.53 O
ATOM 25 O5' G B 549 -16.530 107.124 101.654 1.00 71.03 O
TER
ATOM 2 P U A 547 -9.327 115.857 103.126 1.00 86.63 P
ATOM 3 OP1 U A 547 -8.487 115.414 104.266 1.00 85.88 O
ATOM 4 OP2 U A 547 -9.270 115.112 101.842 1.00 84.90 O
ATOM 5 O5' U A 547 -10.849 115.871 103.602 1.00 86.70 O
ATOM 6 C5' U A 547 -11.837 116.578 102.840 1.00 85.94 C
ATOM 7 C4' U A 547 -13.229 116.294 103.344 1.00 85.97 C
ATOM 8 O4' U A 547 -14.159 117.017 102.489 1.00 86.63 O
ATOM 9 C3' U A 547 -13.660 114.833 103.276 1.00 85.49 C
ATOM 10 O3' U A 547 -13.431 114.149 104.504 1.00 82.85 O
ATOM 11 C2' U A 547 -15.131 114.924 102.893 1.00 86.15 C
ATOM 12 O2' U A 547 -15.964 115.219 103.996 1.00 86.42 O
ATOM 13 C1' U A 547 -15.103 116.118 101.937 1.00 86.82 C
ATOM 14 N1 U A 547 -14.677 115.784 100.565 1.00 87.33 N
ATOM 15 C2 U A 547 -15.654 115.677 99.589 1.00 88.85 C
ATOM 16 O2 U A 547 -16.840 115.867 99.805 1.00 90.36 O
ATOM 17 N3 U A 547 -15.190 115.342 98.340 1.00 89.52 N
ATOM 18 C4 U A 547 -13.879 115.118 97.971 1.00 89.58 C
ATOM 19 O4 U A 547 -13.623 114.778 96.815 1.00 89.50 O
ATOM 20 C5 U A 547 -12.932 115.262 99.028 1.00 89.07 C
ATOM 21 C6 U A 547 -13.350 115.578 100.254 1.00 87.94 C
ATOM 22 P U A 548 -13.163 112.564 104.499 1.00 82.06 P
ATOM 23 OP1 U A 548 -13.313 112.108 105.901 1.00 81.86 O
ATOM 24 OP2 U A 548 -11.889 112.303 103.778 1.00 82.83 O
ATOM 25 O5' U A 548 -14.362 111.965 103.631 1.00 80.13 O
TER
ATOM 1 O3' U B 547 -13.431 114.149 104.504 1.00 82.85 O
ATOM 2 P U B 548 -13.163 112.564 104.499 1.00 82.06 P
ATOM 3 OP1 U B 548 -13.313 112.108 105.901 1.00 81.86 O
ATOM 4 OP2 U B 548 -11.889 112.303 103.778 1.00 82.83 O
ATOM 5 O5' U B 548 -14.362 111.965 103.631 1.00 80.13 O
ATOM 6 C5' U B 548 -15.716 111.984 104.122 1.00 78.30 C
ATOM 7 C4' U B 548 -16.675 111.467 103.071 1.00 77.41 C
ATOM 8 O4' U B 548 -16.667 112.353 101.923 1.00 76.91 O
ATOM 9 C3' U B 548 -16.370 110.099 102.481 1.00 76.24 C
ATOM 10 O3' U B 548 -16.809 109.019 103.292 1.00 74.70 O
ATOM 11 C2' U B 548 -17.122 110.142 101.164 1.00 76.67 C
ATOM 12 O2' U B 548 -18.502 109.891 101.306 1.00 75.84 O
ATOM 13 C1' U B 548 -16.886 111.595 100.739 1.00 78.16 C
ATOM 14 N1 U B 548 -15.701 111.705 99.877 1.00 80.10 N
ATOM 15 C2 U B 548 -15.849 111.440 98.520 1.00 80.60 C
ATOM 16 O2 U B 548 -16.920 111.160 98.007 1.00 80.13 O
ATOM 17 N3 U B 548 -14.689 111.509 97.788 1.00 81.89 N
ATOM 18 C4 U B 548 -13.419 111.812 98.254 1.00 82.02 C
ATOM 19 O4 U B 548 -12.464 111.769 97.478 1.00 82.35 O
ATOM 20 C5 U B 548 -13.349 112.098 99.655 1.00 81.68 C
ATOM 21 C6 U B 548 -14.460 112.042 100.397 1.00 80.92 C
ATOM 22 P G B 549 -16.117 107.578 103.125 1.00 74.01 P
ATOM 23 OP1 G B 549 -16.750 106.650 104.100 1.00 73.86 O
ATOM 24 OP2 G B 549 -14.643 107.774 103.152 1.00 72.53 O
ATOM 25 O5' G B 549 -16.530 107.124 101.654 1.00 71.03 O
TER
Atoms:
C4: (-13.879,115.118,97.971)
N3: (-15.190,115.342,98.340)
OP1: (-8.487,115.414,104.266)
OP2: (-9.270,115.112,101.842)
C2: (-15.654,115.677,99.589)
C1': (-15.103,116.118,101.937)
C3': (-13.660,114.833,103.276)
O5': (-10.849,115.871,103.602)
O4': (-14.159,117.017,102.489)
C5': (-11.837,116.578,102.840)
P: (-9.327,115.857,103.126)
C4': (-13.229,116.294,103.344)
C2': (-15.131,114.924,102.893)
O2': (-15.964,115.219,103.996)
N1: (-14.677,115.784,100.565)
O4: (-13.623,114.778,96.815)
O2: (-16.840,115.867,99.805)
C6: (-13.350,115.578,100.254)
C5: (-12.932,115.262,99.028)
O3': (-13.431,114.149,104.504)
N3: (-15.190,115.342,98.340)
OP1: (-8.487,115.414,104.266)
OP2: (-9.270,115.112,101.842)
C2: (-15.654,115.677,99.589)
C1': (-15.103,116.118,101.937)
C3': (-13.660,114.833,103.276)
O5': (-10.849,115.871,103.602)
O4': (-14.159,117.017,102.489)
C5': (-11.837,116.578,102.840)
P: (-9.327,115.857,103.126)
C4': (-13.229,116.294,103.344)
C2': (-15.131,114.924,102.893)
O2': (-15.964,115.219,103.996)
N1: (-14.677,115.784,100.565)
O4: (-13.623,114.778,96.815)
O2: (-16.840,115.867,99.805)
C6: (-13.350,115.578,100.254)
C5: (-12.932,115.262,99.028)
O3': (-13.431,114.149,104.504)
C4: (-13.419,111.812,98.254)
N3: (-14.689,111.509,97.788)
OP1: (-13.313,112.108,105.901)
OP2: (-11.889,112.303,103.778)
C2: (-15.849,111.440,98.520)
C1': (-16.886,111.595,100.739)
C3': (-16.370,110.099,102.481)
O5': (-14.362,111.965,103.631)
O4': (-16.667,112.353,101.923)
C5': (-15.716,111.984,104.122)
P: (-13.163,112.564,104.499)
C4': (-16.675,111.467,103.071)
C2': (-17.122,110.142,101.164)
O2': (-18.502,109.891,101.306)
N1: (-15.701,111.705,99.877)
O4: (-12.464,111.769,97.478)
O2: (-16.920,111.160,98.007)
C6: (-14.460,112.042,100.397)
C5: (-13.349,112.098,99.655)
O3': (-16.809,109.019,103.292)
N3: (-14.689,111.509,97.788)
OP1: (-13.313,112.108,105.901)
OP2: (-11.889,112.303,103.778)
C2: (-15.849,111.440,98.520)
C1': (-16.886,111.595,100.739)
C3': (-16.370,110.099,102.481)
O5': (-14.362,111.965,103.631)
O4': (-16.667,112.353,101.923)
C5': (-15.716,111.984,104.122)
P: (-13.163,112.564,104.499)
C4': (-16.675,111.467,103.071)
C2': (-17.122,110.142,101.164)
O2': (-18.502,109.891,101.306)
N1: (-15.701,111.705,99.877)
O4: (-12.464,111.769,97.478)
O2: (-16.920,111.160,98.007)
C6: (-14.460,112.042,100.397)
C5: (-13.349,112.098,99.655)
O3': (-16.809,109.019,103.292)
Image (generated by PyMOL):