Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DIY:A94:A41
Extra
PDB:
ATOM 1 O3' U A 93 -3.974 48.518 12.104 1.00 36.36 O
ATOM 2 P C A 94 -4.821 49.190 13.280 1.00 36.75 P
ATOM 3 OP1 C A 94 -4.771 50.652 13.078 1.00 36.51 O
ATOM 4 OP2 C A 94 -4.349 48.614 14.563 1.00 37.15 O
ATOM 5 O5' C A 94 -6.308 48.669 12.994 1.00 36.56 O
ATOM 6 C5' C A 94 -7.269 48.604 14.046 1.00 36.93 C
ATOM 7 C4' C A 94 -8.640 48.254 13.501 1.00 37.26 C
ATOM 8 O4' C A 94 -9.028 49.237 12.508 1.00 37.22 O
ATOM 9 C3' C A 94 -8.733 46.934 12.749 1.00 37.79 C
ATOM 10 O3' C A 94 -8.918 45.837 13.635 1.00 38.69 O
ATOM 11 C2' C A 94 -9.956 47.172 11.871 1.00 37.62 C
ATOM 12 O2' C A 94 -11.172 47.083 12.593 1.00 38.59 O
ATOM 13 C1' C A 94 -9.722 48.610 11.438 1.00 36.60 C
ATOM 14 N1 C A 94 -8.974 48.766 10.129 1.00 35.96 N
ATOM 15 C2 C A 94 -9.672 48.688 8.914 1.00 35.38 C
ATOM 16 O2 C A 94 -10.889 48.479 8.919 1.00 35.58 O
ATOM 17 N3 C A 94 -8.989 48.842 7.751 1.00 35.15 N
ATOM 18 C4 C A 94 -7.672 49.065 7.759 1.00 34.82 C
ATOM 19 N4 C A 94 -7.049 49.209 6.587 1.00 35.09 N
ATOM 20 C5 C A 94 -6.938 49.147 8.976 1.00 34.84 C
ATOM 21 C6 C A 94 -7.623 48.996 10.116 1.00 35.47 C
ATOM 22 P C A 95 -8.483 44.361 13.187 1.00 39.04 P
ATOM 23 OP1 C A 95 -8.722 43.467 14.346 1.00 38.99 O
ATOM 24 OP2 C A 95 -7.130 44.432 12.582 1.00 38.48 O
ATOM 25 O5' C A 95 -9.515 44.023 12.009 1.00 39.18 O
TER
ATOM 1 O3' C B 40 -4.180 55.085 1.761 1.00 36.52 O
ATOM 2 P A B 41 -4.377 53.697 2.527 1.00 33.86 P
ATOM 3 OP1 A B 41 -3.181 52.865 2.266 1.00 34.08 O
ATOM 4 OP2 A B 41 -5.723 53.176 2.192 1.00 33.66 O
ATOM 5 O5' A B 41 -4.374 54.158 4.059 1.00 32.07 O
ATOM 6 C5' A B 41 -3.150 54.422 4.739 1.00 29.31 C
ATOM 7 C4' A B 41 -3.072 53.611 6.022 1.00 27.20 C
ATOM 8 O4' A B 41 -4.293 53.788 6.789 1.00 26.42 O
ATOM 9 C3' A B 41 -2.906 52.105 5.828 1.00 26.21 C
ATOM 10 O3' A B 41 -1.842 51.610 6.643 1.00 26.02 O
ATOM 11 C2' A B 41 -4.255 51.549 6.276 1.00 25.80 C
ATOM 12 O2' A B 41 -4.169 50.260 6.844 1.00 26.50 O
ATOM 13 C1' A B 41 -4.646 52.549 7.354 1.00 25.21 C
ATOM 14 N9 A B 41 -6.066 52.502 7.717 1.00 24.49 N
ATOM 15 C8 A B 41 -7.139 52.473 6.866 1.00 24.16 C
ATOM 16 N7 A B 41 -8.303 52.420 7.470 1.00 23.78 N
ATOM 17 C5 A B 41 -7.980 52.412 8.816 1.00 23.56 C
ATOM 18 C6 A B 41 -8.769 52.362 9.986 1.00 23.31 C
ATOM 19 N6 A B 41 -10.103 52.312 9.968 1.00 24.08 N
ATOM 20 N1 A B 41 -8.140 52.373 11.182 1.00 22.91 N
ATOM 21 C2 A B 41 -6.803 52.426 11.199 1.00 23.05 C
ATOM 22 N3 A B 41 -5.953 52.474 10.168 1.00 23.49 N
ATOM 23 C4 A B 41 -6.606 52.464 8.989 1.00 23.83 C
ATOM 24 P G B 42 -0.302 51.831 6.257 1.00 25.31 P
ATOM 25 OP1 G B 42 0.122 53.160 6.762 1.00 25.76 O
ATOM 26 OP2 G B 42 -0.170 51.525 4.812 1.00 25.55 O
ATOM 27 O5' G B 42 0.442 50.710 7.120 1.00 24.05 O
TER
ATOM 2 P C A 94 -4.821 49.190 13.280 1.00 36.75 P
ATOM 3 OP1 C A 94 -4.771 50.652 13.078 1.00 36.51 O
ATOM 4 OP2 C A 94 -4.349 48.614 14.563 1.00 37.15 O
ATOM 5 O5' C A 94 -6.308 48.669 12.994 1.00 36.56 O
ATOM 6 C5' C A 94 -7.269 48.604 14.046 1.00 36.93 C
ATOM 7 C4' C A 94 -8.640 48.254 13.501 1.00 37.26 C
ATOM 8 O4' C A 94 -9.028 49.237 12.508 1.00 37.22 O
ATOM 9 C3' C A 94 -8.733 46.934 12.749 1.00 37.79 C
ATOM 10 O3' C A 94 -8.918 45.837 13.635 1.00 38.69 O
ATOM 11 C2' C A 94 -9.956 47.172 11.871 1.00 37.62 C
ATOM 12 O2' C A 94 -11.172 47.083 12.593 1.00 38.59 O
ATOM 13 C1' C A 94 -9.722 48.610 11.438 1.00 36.60 C
ATOM 14 N1 C A 94 -8.974 48.766 10.129 1.00 35.96 N
ATOM 15 C2 C A 94 -9.672 48.688 8.914 1.00 35.38 C
ATOM 16 O2 C A 94 -10.889 48.479 8.919 1.00 35.58 O
ATOM 17 N3 C A 94 -8.989 48.842 7.751 1.00 35.15 N
ATOM 18 C4 C A 94 -7.672 49.065 7.759 1.00 34.82 C
ATOM 19 N4 C A 94 -7.049 49.209 6.587 1.00 35.09 N
ATOM 20 C5 C A 94 -6.938 49.147 8.976 1.00 34.84 C
ATOM 21 C6 C A 94 -7.623 48.996 10.116 1.00 35.47 C
ATOM 22 P C A 95 -8.483 44.361 13.187 1.00 39.04 P
ATOM 23 OP1 C A 95 -8.722 43.467 14.346 1.00 38.99 O
ATOM 24 OP2 C A 95 -7.130 44.432 12.582 1.00 38.48 O
ATOM 25 O5' C A 95 -9.515 44.023 12.009 1.00 39.18 O
TER
ATOM 1 O3' C B 40 -4.180 55.085 1.761 1.00 36.52 O
ATOM 2 P A B 41 -4.377 53.697 2.527 1.00 33.86 P
ATOM 3 OP1 A B 41 -3.181 52.865 2.266 1.00 34.08 O
ATOM 4 OP2 A B 41 -5.723 53.176 2.192 1.00 33.66 O
ATOM 5 O5' A B 41 -4.374 54.158 4.059 1.00 32.07 O
ATOM 6 C5' A B 41 -3.150 54.422 4.739 1.00 29.31 C
ATOM 7 C4' A B 41 -3.072 53.611 6.022 1.00 27.20 C
ATOM 8 O4' A B 41 -4.293 53.788 6.789 1.00 26.42 O
ATOM 9 C3' A B 41 -2.906 52.105 5.828 1.00 26.21 C
ATOM 10 O3' A B 41 -1.842 51.610 6.643 1.00 26.02 O
ATOM 11 C2' A B 41 -4.255 51.549 6.276 1.00 25.80 C
ATOM 12 O2' A B 41 -4.169 50.260 6.844 1.00 26.50 O
ATOM 13 C1' A B 41 -4.646 52.549 7.354 1.00 25.21 C
ATOM 14 N9 A B 41 -6.066 52.502 7.717 1.00 24.49 N
ATOM 15 C8 A B 41 -7.139 52.473 6.866 1.00 24.16 C
ATOM 16 N7 A B 41 -8.303 52.420 7.470 1.00 23.78 N
ATOM 17 C5 A B 41 -7.980 52.412 8.816 1.00 23.56 C
ATOM 18 C6 A B 41 -8.769 52.362 9.986 1.00 23.31 C
ATOM 19 N6 A B 41 -10.103 52.312 9.968 1.00 24.08 N
ATOM 20 N1 A B 41 -8.140 52.373 11.182 1.00 22.91 N
ATOM 21 C2 A B 41 -6.803 52.426 11.199 1.00 23.05 C
ATOM 22 N3 A B 41 -5.953 52.474 10.168 1.00 23.49 N
ATOM 23 C4 A B 41 -6.606 52.464 8.989 1.00 23.83 C
ATOM 24 P G B 42 -0.302 51.831 6.257 1.00 25.31 P
ATOM 25 OP1 G B 42 0.122 53.160 6.762 1.00 25.76 O
ATOM 26 OP2 G B 42 -0.170 51.525 4.812 1.00 25.55 O
ATOM 27 O5' G B 42 0.442 50.710 7.120 1.00 24.05 O
TER
Atoms:
C2: (-9.672,48.688,8.914)
OP1: (-4.771,50.652,13.078)
OP2: (-4.349,48.614,14.563)
C4: (-7.672,49.065,7.759)
O5': (-6.308,48.669,12.994)
C3': (-8.733,46.934,12.749)
C1': (-9.722,48.610,11.438)
O4': (-9.028,49.237,12.508)
C5': (-7.269,48.604,14.046)
P: (-4.821,49.190,13.280)
O2: (-10.889,48.479,8.919)
C4': (-8.640,48.254,13.501)
C2': (-9.956,47.172,11.871)
O2': (-11.172,47.083,12.593)
N1: (-8.974,48.766,10.129)
N3: (-8.989,48.842,7.751)
N4: (-7.049,49.209,6.587)
C6: (-7.623,48.996,10.116)
C5: (-6.938,49.147,8.976)
O3': (-8.918,45.837,13.635)
OP1: (-4.771,50.652,13.078)
OP2: (-4.349,48.614,14.563)
C4: (-7.672,49.065,7.759)
O5': (-6.308,48.669,12.994)
C3': (-8.733,46.934,12.749)
C1': (-9.722,48.610,11.438)
O4': (-9.028,49.237,12.508)
C5': (-7.269,48.604,14.046)
P: (-4.821,49.190,13.280)
O2: (-10.889,48.479,8.919)
C4': (-8.640,48.254,13.501)
C2': (-9.956,47.172,11.871)
O2': (-11.172,47.083,12.593)
N1: (-8.974,48.766,10.129)
N3: (-8.989,48.842,7.751)
N4: (-7.049,49.209,6.587)
C6: (-7.623,48.996,10.116)
C5: (-6.938,49.147,8.976)
O3': (-8.918,45.837,13.635)
OP1: (-3.181,52.865,2.266)
OP2: (-5.723,53.176,2.192)
C3': (-2.906,52.105,5.828)
C1': (-4.646,52.549,7.354)
C5': (-3.150,54.422,4.739)
O4': (-4.293,53.788,6.789)
C8: (-7.139,52.473,6.866)
O2': (-4.169,50.260,6.844)
C6: (-8.769,52.362,9.986)
C5: (-7.980,52.412,8.816)
C4: (-6.606,52.464,8.989)
P: (-4.377,53.697,2.527)
C4': (-3.072,53.611,6.022)
C2': (-4.255,51.549,6.276)
C2: (-6.803,52.426,11.199)
N1: (-8.140,52.373,11.182)
N3: (-5.953,52.474,10.168)
N6: (-10.103,52.312,9.968)
N7: (-8.303,52.420,7.470)
N9: (-6.066,52.502,7.717)
O5': (-4.374,54.158,4.059)
O3': (-1.842,51.610,6.643)
OP2: (-5.723,53.176,2.192)
C3': (-2.906,52.105,5.828)
C1': (-4.646,52.549,7.354)
C5': (-3.150,54.422,4.739)
O4': (-4.293,53.788,6.789)
C8: (-7.139,52.473,6.866)
O2': (-4.169,50.260,6.844)
C6: (-8.769,52.362,9.986)
C5: (-7.980,52.412,8.816)
C4: (-6.606,52.464,8.989)
P: (-4.377,53.697,2.527)
C4': (-3.072,53.611,6.022)
C2': (-4.255,51.549,6.276)
C2: (-6.803,52.426,11.199)
N1: (-8.140,52.373,11.182)
N3: (-5.953,52.474,10.168)
N6: (-10.103,52.312,9.968)
N7: (-8.303,52.420,7.470)
N9: (-6.066,52.502,7.717)
O5': (-4.374,54.158,4.059)
O3': (-1.842,51.610,6.643)
Image (generated by PyMOL):