Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DJ0:A94:A41
Extra
PDB:
ATOM 1 O3' U A 93 -3.245 48.699 12.021 1.00 29.84 O
ATOM 2 P C A 94 -4.006 49.272 13.310 1.00 29.94 P
ATOM 3 OP1 C A 94 -3.806 50.740 13.333 1.00 29.29 O
ATOM 4 OP2 C A 94 -3.657 48.461 14.505 1.00 29.22 O
ATOM 5 O5' C A 94 -5.523 48.980 12.906 1.00 29.79 O
ATOM 6 C5' C A 94 -6.545 48.970 13.883 1.00 30.48 C
ATOM 7 C4' C A 94 -7.872 48.653 13.229 1.00 30.76 C
ATOM 8 O4' C A 94 -8.155 49.657 12.222 1.00 30.95 O
ATOM 9 C3' C A 94 -7.916 47.352 12.443 1.00 31.15 C
ATOM 10 O3' C A 94 -8.141 46.247 13.289 1.00 31.99 O
ATOM 11 C2' C A 94 -9.115 47.603 11.541 1.00 30.81 C
ATOM 12 O2' C A 94 -10.339 47.417 12.225 1.00 30.78 O
ATOM 13 C1' C A 94 -8.904 49.067 11.173 1.00 30.56 C
ATOM 14 N1 C A 94 -8.201 49.241 9.857 1.00 30.45 N
ATOM 15 C2 C A 94 -8.953 49.207 8.667 1.00 30.54 C
ATOM 16 O2 C A 94 -10.176 49.033 8.728 1.00 30.58 O
ATOM 17 N3 C A 94 -8.315 49.364 7.473 1.00 30.53 N
ATOM 18 C4 C A 94 -6.988 49.548 7.438 1.00 30.30 C
ATOM 19 N4 C A 94 -6.402 49.698 6.244 1.00 29.82 N
ATOM 20 C5 C A 94 -6.205 49.580 8.635 1.00 30.15 C
ATOM 21 C6 C A 94 -6.843 49.426 9.805 1.00 30.15 C
ATOM 22 P C A 95 -7.761 44.775 12.800 1.00 32.92 P
ATOM 23 OP1 C A 95 -8.085 43.865 13.924 1.00 33.25 O
ATOM 24 OP2 C A 95 -6.385 44.812 12.251 1.00 32.36 O
ATOM 25 O5' C A 95 -8.768 44.497 11.582 1.00 33.56 O
TER
ATOM 1 O3' C B 40 -3.256 55.561 1.768 1.00 38.55 O
ATOM 2 P A B 41 -3.333 54.140 2.492 1.00 37.70 P
ATOM 3 OP1 A B 41 -2.038 53.441 2.323 1.00 37.76 O
ATOM 4 OP2 A B 41 -4.594 53.486 2.058 1.00 37.59 O
ATOM 5 O5' A B 41 -3.490 54.582 4.020 1.00 36.55 O
ATOM 6 C5' A B 41 -2.347 54.932 4.791 1.00 34.55 C
ATOM 7 C4' A B 41 -2.319 54.072 6.038 1.00 33.26 C
ATOM 8 O4' A B 41 -3.578 54.214 6.741 1.00 32.08 O
ATOM 9 C3' A B 41 -2.144 52.573 5.783 1.00 32.98 C
ATOM 10 O3' A B 41 -1.096 52.056 6.602 1.00 33.97 O
ATOM 11 C2' A B 41 -3.497 51.970 6.151 1.00 31.93 C
ATOM 12 O2' A B 41 -3.392 50.668 6.690 1.00 31.44 O
ATOM 13 C1' A B 41 -3.958 52.946 7.226 1.00 30.82 C
ATOM 14 N9 A B 41 -5.397 52.928 7.475 1.00 29.69 N
ATOM 15 C8 A B 41 -6.407 52.949 6.550 1.00 29.12 C
ATOM 16 N7 A B 41 -7.605 52.921 7.079 1.00 28.98 N
ATOM 17 C5 A B 41 -7.360 52.878 8.444 1.00 28.71 C
ATOM 18 C6 A B 41 -8.210 52.835 9.566 1.00 28.25 C
ATOM 19 N6 A B 41 -9.540 52.827 9.469 1.00 29.08 N
ATOM 20 N1 A B 41 -7.648 52.805 10.794 1.00 28.07 N
ATOM 21 C2 A B 41 -6.314 52.816 10.890 1.00 27.93 C
ATOM 22 N3 A B 41 -5.413 52.855 9.909 1.00 28.15 N
ATOM 23 C4 A B 41 -6.005 52.884 8.705 1.00 28.69 C
ATOM 24 P G B 42 0.385 52.005 6.014 1.00 34.34 P
ATOM 25 OP1 G B 42 1.004 53.334 6.224 1.00 35.27 O
ATOM 26 OP2 G B 42 0.296 51.432 4.649 1.00 34.74 O
ATOM 27 O5' G B 42 1.109 50.946 6.957 1.00 34.82 O
TER
ATOM 2 P C A 94 -4.006 49.272 13.310 1.00 29.94 P
ATOM 3 OP1 C A 94 -3.806 50.740 13.333 1.00 29.29 O
ATOM 4 OP2 C A 94 -3.657 48.461 14.505 1.00 29.22 O
ATOM 5 O5' C A 94 -5.523 48.980 12.906 1.00 29.79 O
ATOM 6 C5' C A 94 -6.545 48.970 13.883 1.00 30.48 C
ATOM 7 C4' C A 94 -7.872 48.653 13.229 1.00 30.76 C
ATOM 8 O4' C A 94 -8.155 49.657 12.222 1.00 30.95 O
ATOM 9 C3' C A 94 -7.916 47.352 12.443 1.00 31.15 C
ATOM 10 O3' C A 94 -8.141 46.247 13.289 1.00 31.99 O
ATOM 11 C2' C A 94 -9.115 47.603 11.541 1.00 30.81 C
ATOM 12 O2' C A 94 -10.339 47.417 12.225 1.00 30.78 O
ATOM 13 C1' C A 94 -8.904 49.067 11.173 1.00 30.56 C
ATOM 14 N1 C A 94 -8.201 49.241 9.857 1.00 30.45 N
ATOM 15 C2 C A 94 -8.953 49.207 8.667 1.00 30.54 C
ATOM 16 O2 C A 94 -10.176 49.033 8.728 1.00 30.58 O
ATOM 17 N3 C A 94 -8.315 49.364 7.473 1.00 30.53 N
ATOM 18 C4 C A 94 -6.988 49.548 7.438 1.00 30.30 C
ATOM 19 N4 C A 94 -6.402 49.698 6.244 1.00 29.82 N
ATOM 20 C5 C A 94 -6.205 49.580 8.635 1.00 30.15 C
ATOM 21 C6 C A 94 -6.843 49.426 9.805 1.00 30.15 C
ATOM 22 P C A 95 -7.761 44.775 12.800 1.00 32.92 P
ATOM 23 OP1 C A 95 -8.085 43.865 13.924 1.00 33.25 O
ATOM 24 OP2 C A 95 -6.385 44.812 12.251 1.00 32.36 O
ATOM 25 O5' C A 95 -8.768 44.497 11.582 1.00 33.56 O
TER
ATOM 1 O3' C B 40 -3.256 55.561 1.768 1.00 38.55 O
ATOM 2 P A B 41 -3.333 54.140 2.492 1.00 37.70 P
ATOM 3 OP1 A B 41 -2.038 53.441 2.323 1.00 37.76 O
ATOM 4 OP2 A B 41 -4.594 53.486 2.058 1.00 37.59 O
ATOM 5 O5' A B 41 -3.490 54.582 4.020 1.00 36.55 O
ATOM 6 C5' A B 41 -2.347 54.932 4.791 1.00 34.55 C
ATOM 7 C4' A B 41 -2.319 54.072 6.038 1.00 33.26 C
ATOM 8 O4' A B 41 -3.578 54.214 6.741 1.00 32.08 O
ATOM 9 C3' A B 41 -2.144 52.573 5.783 1.00 32.98 C
ATOM 10 O3' A B 41 -1.096 52.056 6.602 1.00 33.97 O
ATOM 11 C2' A B 41 -3.497 51.970 6.151 1.00 31.93 C
ATOM 12 O2' A B 41 -3.392 50.668 6.690 1.00 31.44 O
ATOM 13 C1' A B 41 -3.958 52.946 7.226 1.00 30.82 C
ATOM 14 N9 A B 41 -5.397 52.928 7.475 1.00 29.69 N
ATOM 15 C8 A B 41 -6.407 52.949 6.550 1.00 29.12 C
ATOM 16 N7 A B 41 -7.605 52.921 7.079 1.00 28.98 N
ATOM 17 C5 A B 41 -7.360 52.878 8.444 1.00 28.71 C
ATOM 18 C6 A B 41 -8.210 52.835 9.566 1.00 28.25 C
ATOM 19 N6 A B 41 -9.540 52.827 9.469 1.00 29.08 N
ATOM 20 N1 A B 41 -7.648 52.805 10.794 1.00 28.07 N
ATOM 21 C2 A B 41 -6.314 52.816 10.890 1.00 27.93 C
ATOM 22 N3 A B 41 -5.413 52.855 9.909 1.00 28.15 N
ATOM 23 C4 A B 41 -6.005 52.884 8.705 1.00 28.69 C
ATOM 24 P G B 42 0.385 52.005 6.014 1.00 34.34 P
ATOM 25 OP1 G B 42 1.004 53.334 6.224 1.00 35.27 O
ATOM 26 OP2 G B 42 0.296 51.432 4.649 1.00 34.74 O
ATOM 27 O5' G B 42 1.109 50.946 6.957 1.00 34.82 O
TER
Atoms:
C2: (-8.953,49.207,8.667)
OP1: (-3.806,50.740,13.333)
OP2: (-3.657,48.461,14.505)
C4: (-6.988,49.548,7.438)
O5': (-5.523,48.980,12.906)
C3': (-7.916,47.352,12.443)
C1': (-8.904,49.067,11.173)
O4': (-8.155,49.657,12.222)
C5': (-6.545,48.970,13.883)
P: (-4.006,49.272,13.310)
O2: (-10.176,49.033,8.728)
C4': (-7.872,48.653,13.229)
C2': (-9.115,47.603,11.541)
O2': (-10.339,47.417,12.225)
N1: (-8.201,49.241,9.857)
N3: (-8.315,49.364,7.473)
N4: (-6.402,49.698,6.244)
C6: (-6.843,49.426,9.805)
C5: (-6.205,49.580,8.635)
O3': (-8.141,46.247,13.289)
OP1: (-3.806,50.740,13.333)
OP2: (-3.657,48.461,14.505)
C4: (-6.988,49.548,7.438)
O5': (-5.523,48.980,12.906)
C3': (-7.916,47.352,12.443)
C1': (-8.904,49.067,11.173)
O4': (-8.155,49.657,12.222)
C5': (-6.545,48.970,13.883)
P: (-4.006,49.272,13.310)
O2: (-10.176,49.033,8.728)
C4': (-7.872,48.653,13.229)
C2': (-9.115,47.603,11.541)
O2': (-10.339,47.417,12.225)
N1: (-8.201,49.241,9.857)
N3: (-8.315,49.364,7.473)
N4: (-6.402,49.698,6.244)
C6: (-6.843,49.426,9.805)
C5: (-6.205,49.580,8.635)
O3': (-8.141,46.247,13.289)
OP1: (-2.038,53.441,2.323)
OP2: (-4.594,53.486,2.058)
C3': (-2.144,52.573,5.783)
C1': (-3.958,52.946,7.226)
C5': (-2.347,54.932,4.791)
O4': (-3.578,54.214,6.741)
C8: (-6.407,52.949,6.550)
O2': (-3.392,50.668,6.690)
C6: (-8.210,52.835,9.566)
C5: (-7.360,52.878,8.444)
C4: (-6.005,52.884,8.705)
P: (-3.333,54.140,2.492)
C4': (-2.319,54.072,6.038)
C2': (-3.497,51.970,6.151)
C2: (-6.314,52.816,10.890)
N1: (-7.648,52.805,10.794)
N3: (-5.413,52.855,9.909)
N6: (-9.540,52.827,9.469)
N7: (-7.605,52.921,7.079)
N9: (-5.397,52.928,7.475)
O5': (-3.490,54.582,4.020)
O3': (-1.096,52.056,6.602)
OP2: (-4.594,53.486,2.058)
C3': (-2.144,52.573,5.783)
C1': (-3.958,52.946,7.226)
C5': (-2.347,54.932,4.791)
O4': (-3.578,54.214,6.741)
C8: (-6.407,52.949,6.550)
O2': (-3.392,50.668,6.690)
C6: (-8.210,52.835,9.566)
C5: (-7.360,52.878,8.444)
C4: (-6.005,52.884,8.705)
P: (-3.333,54.140,2.492)
C4': (-2.319,54.072,6.038)
C2': (-3.497,51.970,6.151)
C2: (-6.314,52.816,10.890)
N1: (-7.648,52.805,10.794)
N3: (-5.413,52.855,9.909)
N6: (-9.540,52.827,9.469)
N7: (-7.605,52.921,7.079)
N9: (-5.397,52.928,7.475)
O5': (-3.490,54.582,4.020)
O3': (-1.096,52.056,6.602)
Image (generated by PyMOL):