Doublet info:
Details
Nucleotide types:
GC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YRJ:B20:B19
Extra
PDB:
ATOM 1 O3' C A 19 26.487 8.902 0.606 1.00 41.59 O
ATOM 2 P G A 20 25.286 9.939 0.875 1.00 46.53 P
ATOM 3 OP1 G A 20 24.270 9.312 1.776 1.00 46.34 O
ATOM 4 OP2 G A 20 24.886 10.432 -0.473 1.00 46.87 O
ATOM 5 O5' G A 20 25.913 11.164 1.671 1.00 43.27 O
ATOM 6 C5' G A 20 25.127 11.872 2.616 1.00 36.15 C
ATOM 7 C4' G A 20 25.925 13.000 3.246 1.00 34.38 C
ATOM 8 O4' G A 20 26.989 12.477 4.088 1.00 29.71 O
ATOM 9 C3' G A 20 26.713 13.949 2.363 1.00 33.23 C
ATOM 10 O3' G A 20 25.954 14.870 1.608 1.00 37.50 O
ATOM 11 C2' G A 20 27.514 14.674 3.419 1.00 29.60 C
ATOM 12 O2' G A 20 26.636 15.497 4.136 1.00 24.91 O
ATOM 13 C1' G A 20 27.952 13.499 4.294 1.00 30.31 C
ATOM 14 N9 G A 20 29.266 13.012 3.882 1.00 28.31 N
ATOM 15 C8 G A 20 29.551 12.027 2.971 1.00 29.07 C
ATOM 16 N7 G A 20 30.832 11.906 2.732 1.00 29.96 N
ATOM 17 C5 G A 20 31.424 12.857 3.554 1.00 30.27 C
ATOM 18 C6 G A 20 32.799 13.219 3.722 1.00 32.89 C
ATOM 19 O6 G A 20 33.793 12.779 3.129 1.00 33.27 O
ATOM 20 N1 G A 20 32.953 14.214 4.684 1.00 30.99 N
ATOM 21 C2 G A 20 31.923 14.791 5.382 1.00 29.50 C
ATOM 22 N2 G A 20 32.263 15.747 6.256 1.00 29.24 N
ATOM 23 N3 G A 20 30.650 14.464 5.233 1.00 27.07 N
ATOM 24 C4 G A 20 30.474 13.511 4.304 1.00 28.07 C
ATOM 25 P C A 21 26.705 15.764 0.502 1.00 44.62 P
ATOM 26 OP1 C A 21 25.785 16.786 -0.051 1.00 45.08 O
ATOM 27 OP2 C A 21 27.420 14.868 -0.440 1.00 43.75 O
ATOM 28 O5' C A 21 27.777 16.536 1.398 1.00 42.34 O
TER
ATOM 1 O3' U B 18 28.039 3.224 2.433 1.00 29.95 O
ATOM 2 P C B 19 27.589 3.890 1.037 1.00 37.47 P
ATOM 3 OP1 C B 19 26.206 3.338 0.919 1.00 37.61 O
ATOM 4 OP2 C B 19 28.559 3.726 -0.097 1.00 36.54 O
ATOM 5 O5' C B 19 27.511 5.452 1.302 1.00 35.30 O
ATOM 6 C5' C B 19 26.286 6.035 1.652 1.00 35.08 C
ATOM 7 C4' C B 19 26.526 7.279 2.411 1.00 32.69 C
ATOM 8 O4' C B 19 27.514 6.993 3.434 1.00 33.64 O
ATOM 9 C3' C B 19 27.250 8.364 1.678 1.00 34.61 C
ATOM 10 O3' C B 19 26.487 8.902 0.606 1.00 41.59 O
ATOM 11 C2' C B 19 27.604 9.245 2.851 1.00 36.29 C
ATOM 12 O2' C B 19 26.436 9.725 3.480 1.00 40.20 O
ATOM 13 C1' C B 19 28.155 8.195 3.806 1.00 34.35 C
ATOM 14 N1 C B 19 29.606 8.030 3.691 1.00 34.67 N
ATOM 15 C2 C B 19 30.433 8.566 4.713 1.00 35.60 C
ATOM 16 O2 C B 19 29.898 9.145 5.684 1.00 35.99 O
ATOM 17 N3 C B 19 31.786 8.431 4.615 1.00 34.69 N
ATOM 18 C4 C B 19 32.315 7.798 3.564 1.00 35.01 C
ATOM 19 N4 C B 19 33.627 7.661 3.524 1.00 33.65 N
ATOM 20 C5 C B 19 31.504 7.262 2.509 1.00 35.90 C
ATOM 21 C6 C B 19 30.164 7.391 2.619 1.00 35.76 C
ATOM 22 P G B 20 25.286 9.939 0.875 1.00 46.53 P
ATOM 23 OP1 G B 20 24.270 9.312 1.776 1.00 46.34 O
ATOM 24 OP2 G B 20 24.886 10.432 -0.473 1.00 46.87 O
ATOM 25 O5' G B 20 25.913 11.164 1.671 1.00 43.27 O
TER
ATOM 2 P G A 20 25.286 9.939 0.875 1.00 46.53 P
ATOM 3 OP1 G A 20 24.270 9.312 1.776 1.00 46.34 O
ATOM 4 OP2 G A 20 24.886 10.432 -0.473 1.00 46.87 O
ATOM 5 O5' G A 20 25.913 11.164 1.671 1.00 43.27 O
ATOM 6 C5' G A 20 25.127 11.872 2.616 1.00 36.15 C
ATOM 7 C4' G A 20 25.925 13.000 3.246 1.00 34.38 C
ATOM 8 O4' G A 20 26.989 12.477 4.088 1.00 29.71 O
ATOM 9 C3' G A 20 26.713 13.949 2.363 1.00 33.23 C
ATOM 10 O3' G A 20 25.954 14.870 1.608 1.00 37.50 O
ATOM 11 C2' G A 20 27.514 14.674 3.419 1.00 29.60 C
ATOM 12 O2' G A 20 26.636 15.497 4.136 1.00 24.91 O
ATOM 13 C1' G A 20 27.952 13.499 4.294 1.00 30.31 C
ATOM 14 N9 G A 20 29.266 13.012 3.882 1.00 28.31 N
ATOM 15 C8 G A 20 29.551 12.027 2.971 1.00 29.07 C
ATOM 16 N7 G A 20 30.832 11.906 2.732 1.00 29.96 N
ATOM 17 C5 G A 20 31.424 12.857 3.554 1.00 30.27 C
ATOM 18 C6 G A 20 32.799 13.219 3.722 1.00 32.89 C
ATOM 19 O6 G A 20 33.793 12.779 3.129 1.00 33.27 O
ATOM 20 N1 G A 20 32.953 14.214 4.684 1.00 30.99 N
ATOM 21 C2 G A 20 31.923 14.791 5.382 1.00 29.50 C
ATOM 22 N2 G A 20 32.263 15.747 6.256 1.00 29.24 N
ATOM 23 N3 G A 20 30.650 14.464 5.233 1.00 27.07 N
ATOM 24 C4 G A 20 30.474 13.511 4.304 1.00 28.07 C
ATOM 25 P C A 21 26.705 15.764 0.502 1.00 44.62 P
ATOM 26 OP1 C A 21 25.785 16.786 -0.051 1.00 45.08 O
ATOM 27 OP2 C A 21 27.420 14.868 -0.440 1.00 43.75 O
ATOM 28 O5' C A 21 27.777 16.536 1.398 1.00 42.34 O
TER
ATOM 1 O3' U B 18 28.039 3.224 2.433 1.00 29.95 O
ATOM 2 P C B 19 27.589 3.890 1.037 1.00 37.47 P
ATOM 3 OP1 C B 19 26.206 3.338 0.919 1.00 37.61 O
ATOM 4 OP2 C B 19 28.559 3.726 -0.097 1.00 36.54 O
ATOM 5 O5' C B 19 27.511 5.452 1.302 1.00 35.30 O
ATOM 6 C5' C B 19 26.286 6.035 1.652 1.00 35.08 C
ATOM 7 C4' C B 19 26.526 7.279 2.411 1.00 32.69 C
ATOM 8 O4' C B 19 27.514 6.993 3.434 1.00 33.64 O
ATOM 9 C3' C B 19 27.250 8.364 1.678 1.00 34.61 C
ATOM 10 O3' C B 19 26.487 8.902 0.606 1.00 41.59 O
ATOM 11 C2' C B 19 27.604 9.245 2.851 1.00 36.29 C
ATOM 12 O2' C B 19 26.436 9.725 3.480 1.00 40.20 O
ATOM 13 C1' C B 19 28.155 8.195 3.806 1.00 34.35 C
ATOM 14 N1 C B 19 29.606 8.030 3.691 1.00 34.67 N
ATOM 15 C2 C B 19 30.433 8.566 4.713 1.00 35.60 C
ATOM 16 O2 C B 19 29.898 9.145 5.684 1.00 35.99 O
ATOM 17 N3 C B 19 31.786 8.431 4.615 1.00 34.69 N
ATOM 18 C4 C B 19 32.315 7.798 3.564 1.00 35.01 C
ATOM 19 N4 C B 19 33.627 7.661 3.524 1.00 33.65 N
ATOM 20 C5 C B 19 31.504 7.262 2.509 1.00 35.90 C
ATOM 21 C6 C B 19 30.164 7.391 2.619 1.00 35.76 C
ATOM 22 P G B 20 25.286 9.939 0.875 1.00 46.53 P
ATOM 23 OP1 G B 20 24.270 9.312 1.776 1.00 46.34 O
ATOM 24 OP2 G B 20 24.886 10.432 -0.473 1.00 46.87 O
ATOM 25 O5' G B 20 25.913 11.164 1.671 1.00 43.27 O
TER
Atoms:
OP1: (24.270,9.312,1.776)
OP2: (24.886,10.432,-0.473)
C3': (26.713,13.949,2.363)
C1': (27.952,13.499,4.294)
C5': (25.127,11.872,2.616)
O6: (33.793,12.779,3.129)
O4': (26.989,12.477,4.088)
C8: (29.551,12.027,2.971)
C2: (31.923,14.791,5.382)
C6: (32.799,13.219,3.722)
C5: (31.424,12.857,3.554)
C4: (30.474,13.511,4.304)
P: (25.286,9.939,0.875)
C4': (25.925,13.000,3.246)
C2': (27.514,14.674,3.419)
O2': (26.636,15.497,4.136)
N1: (32.953,14.214,4.684)
N2: (32.263,15.747,6.256)
N3: (30.650,14.464,5.233)
N7: (30.832,11.906,2.732)
N9: (29.266,13.012,3.882)
O5': (25.913,11.164,1.671)
O3': (25.954,14.870,1.608)
OP2: (24.886,10.432,-0.473)
C3': (26.713,13.949,2.363)
C1': (27.952,13.499,4.294)
C5': (25.127,11.872,2.616)
O6: (33.793,12.779,3.129)
O4': (26.989,12.477,4.088)
C8: (29.551,12.027,2.971)
C2: (31.923,14.791,5.382)
C6: (32.799,13.219,3.722)
C5: (31.424,12.857,3.554)
C4: (30.474,13.511,4.304)
P: (25.286,9.939,0.875)
C4': (25.925,13.000,3.246)
C2': (27.514,14.674,3.419)
O2': (26.636,15.497,4.136)
N1: (32.953,14.214,4.684)
N2: (32.263,15.747,6.256)
N3: (30.650,14.464,5.233)
N7: (30.832,11.906,2.732)
N9: (29.266,13.012,3.882)
O5': (25.913,11.164,1.671)
O3': (25.954,14.870,1.608)
C2: (30.433,8.566,4.713)
OP1: (26.206,3.338,0.919)
OP2: (28.559,3.726,-0.097)
C4: (32.315,7.798,3.564)
O5': (27.511,5.452,1.302)
C3': (27.250,8.364,1.678)
C1': (28.155,8.195,3.806)
O4': (27.514,6.993,3.434)
C5': (26.286,6.035,1.652)
P: (27.589,3.890,1.037)
O2: (29.898,9.145,5.684)
C4': (26.526,7.279,2.411)
C2': (27.604,9.245,2.851)
O2': (26.436,9.725,3.480)
N1: (29.606,8.030,3.691)
N3: (31.786,8.431,4.615)
N4: (33.627,7.661,3.524)
C6: (30.164,7.391,2.619)
C5: (31.504,7.262,2.509)
O3': (26.487,8.902,0.606)
OP1: (26.206,3.338,0.919)
OP2: (28.559,3.726,-0.097)
C4: (32.315,7.798,3.564)
O5': (27.511,5.452,1.302)
C3': (27.250,8.364,1.678)
C1': (28.155,8.195,3.806)
O4': (27.514,6.993,3.434)
C5': (26.286,6.035,1.652)
P: (27.589,3.890,1.037)
O2: (29.898,9.145,5.684)
C4': (26.526,7.279,2.411)
C2': (27.604,9.245,2.851)
O2': (26.436,9.725,3.480)
N1: (29.606,8.030,3.691)
N3: (31.786,8.431,4.615)
N4: (33.627,7.661,3.524)
C6: (30.164,7.391,2.619)
C5: (31.504,7.262,2.509)
O3': (26.487,8.902,0.606)
Image (generated by PyMOL):