Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YZD:A6:A7
Extra
PDB:
ATOM 1 P U A 6 -10.072 24.556 54.407 1.00 38.62 P
ATOM 2 OP1 U A 6 -11.315 24.756 55.218 1.00 34.39 O
ATOM 3 OP2 U A 6 -8.780 25.182 54.848 1.00 33.26 O
ATOM 4 O5' U A 6 -9.798 22.991 54.260 1.00 33.31 O
ATOM 5 C5' U A 6 -10.790 22.124 53.736 1.00 27.16 C
ATOM 6 C4' U A 6 -10.197 20.770 53.468 1.00 25.46 C
ATOM 7 O4' U A 6 -9.273 20.871 52.358 1.00 21.39 O
ATOM 8 C3' U A 6 -9.330 20.186 54.573 1.00 24.61 C
ATOM 9 O3' U A 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 10 C2' U A 6 -8.534 19.147 53.807 1.00 20.78 C
ATOM 11 O2' U A 6 -9.306 18.012 53.501 1.00 21.96 O
ATOM 12 C1' U A 6 -8.247 19.906 52.516 1.00 22.61 C
ATOM 13 N1 U A 6 -6.954 20.597 52.569 1.00 23.68 N
ATOM 14 C2 U A 6 -5.829 19.855 52.236 1.00 25.36 C
ATOM 15 O2 U A 6 -5.884 18.671 51.917 1.00 24.75 O
ATOM 16 N3 U A 6 -4.645 20.546 52.292 1.00 23.26 N
ATOM 17 C4 U A 6 -4.473 21.864 52.643 1.00 23.26 C
ATOM 18 O4 U A 6 -3.340 22.330 52.678 1.00 23.51 O
ATOM 19 C5 U A 6 -5.681 22.561 52.983 1.00 22.86 C
ATOM 20 C6 U A 6 -6.850 21.918 52.934 1.00 22.67 C
ATOM 21 P U A 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 22 OP1 U A 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 23 OP2 U A 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 24 O5' U A 7 -8.254 18.685 57.108 1.00 25.67 O
TER
ATOM 1 O3' U B 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 2 P U B 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 3 OP1 U B 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 4 OP2 U B 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 5 O5' U B 7 -8.254 18.685 57.108 1.00 25.67 O
ATOM 6 C5' U B 7 -8.449 17.282 57.050 1.00 25.11 C
ATOM 7 C4' U B 7 -7.134 16.575 56.884 1.00 26.18 C
ATOM 8 O4' U B 7 -6.483 17.039 55.670 1.00 25.50 O
ATOM 9 C3' U B 7 -6.093 16.831 57.958 1.00 25.22 C
ATOM 10 O3' U B 7 -6.337 16.057 59.125 1.00 25.01 O
ATOM 11 C2' U B 7 -4.821 16.415 57.232 1.00 24.42 C
ATOM 12 O2' U B 7 -4.688 15.017 57.100 1.00 23.23 O
ATOM 13 C1' U B 7 -5.075 17.001 55.844 1.00 26.04 C
ATOM 14 N1 U B 7 -4.542 18.368 55.752 1.00 26.68 N
ATOM 15 C2 U B 7 -3.190 18.505 55.506 1.00 27.23 C
ATOM 16 O2 U B 7 -2.460 17.561 55.309 1.00 26.16 O
ATOM 17 N3 U B 7 -2.728 19.797 55.498 1.00 27.78 N
ATOM 18 C4 U B 7 -3.464 20.939 55.697 1.00 27.06 C
ATOM 19 O4 U B 7 -2.895 22.025 55.686 1.00 27.62 O
ATOM 20 C5 U B 7 -4.862 20.722 55.916 1.00 26.11 C
ATOM 21 C6 U B 7 -5.342 19.471 55.931 1.00 26.92 C
ATOM 22 P A B 8 -5.931 16.648 60.564 1.00 28.27 P
ATOM 23 OP1 A B 8 -6.496 15.769 61.629 1.00 29.58 O
ATOM 24 OP2 A B 8 -6.221 18.104 60.577 1.00 29.78 O
ATOM 25 O5' A B 8 -4.355 16.493 60.608 1.00 27.35 O
TER
ATOM 2 OP1 U A 6 -11.315 24.756 55.218 1.00 34.39 O
ATOM 3 OP2 U A 6 -8.780 25.182 54.848 1.00 33.26 O
ATOM 4 O5' U A 6 -9.798 22.991 54.260 1.00 33.31 O
ATOM 5 C5' U A 6 -10.790 22.124 53.736 1.00 27.16 C
ATOM 6 C4' U A 6 -10.197 20.770 53.468 1.00 25.46 C
ATOM 7 O4' U A 6 -9.273 20.871 52.358 1.00 21.39 O
ATOM 8 C3' U A 6 -9.330 20.186 54.573 1.00 24.61 C
ATOM 9 O3' U A 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 10 C2' U A 6 -8.534 19.147 53.807 1.00 20.78 C
ATOM 11 O2' U A 6 -9.306 18.012 53.501 1.00 21.96 O
ATOM 12 C1' U A 6 -8.247 19.906 52.516 1.00 22.61 C
ATOM 13 N1 U A 6 -6.954 20.597 52.569 1.00 23.68 N
ATOM 14 C2 U A 6 -5.829 19.855 52.236 1.00 25.36 C
ATOM 15 O2 U A 6 -5.884 18.671 51.917 1.00 24.75 O
ATOM 16 N3 U A 6 -4.645 20.546 52.292 1.00 23.26 N
ATOM 17 C4 U A 6 -4.473 21.864 52.643 1.00 23.26 C
ATOM 18 O4 U A 6 -3.340 22.330 52.678 1.00 23.51 O
ATOM 19 C5 U A 6 -5.681 22.561 52.983 1.00 22.86 C
ATOM 20 C6 U A 6 -6.850 21.918 52.934 1.00 22.67 C
ATOM 21 P U A 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 22 OP1 U A 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 23 OP2 U A 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 24 O5' U A 7 -8.254 18.685 57.108 1.00 25.67 O
TER
ATOM 1 O3' U B 6 -10.083 19.605 55.625 1.00 22.95 O
ATOM 2 P U B 7 -9.513 19.659 57.128 1.00 26.23 P
ATOM 3 OP1 U B 7 -10.555 19.022 57.971 1.00 25.66 O
ATOM 4 OP2 U B 7 -9.023 21.025 57.456 1.00 23.16 O
ATOM 5 O5' U B 7 -8.254 18.685 57.108 1.00 25.67 O
ATOM 6 C5' U B 7 -8.449 17.282 57.050 1.00 25.11 C
ATOM 7 C4' U B 7 -7.134 16.575 56.884 1.00 26.18 C
ATOM 8 O4' U B 7 -6.483 17.039 55.670 1.00 25.50 O
ATOM 9 C3' U B 7 -6.093 16.831 57.958 1.00 25.22 C
ATOM 10 O3' U B 7 -6.337 16.057 59.125 1.00 25.01 O
ATOM 11 C2' U B 7 -4.821 16.415 57.232 1.00 24.42 C
ATOM 12 O2' U B 7 -4.688 15.017 57.100 1.00 23.23 O
ATOM 13 C1' U B 7 -5.075 17.001 55.844 1.00 26.04 C
ATOM 14 N1 U B 7 -4.542 18.368 55.752 1.00 26.68 N
ATOM 15 C2 U B 7 -3.190 18.505 55.506 1.00 27.23 C
ATOM 16 O2 U B 7 -2.460 17.561 55.309 1.00 26.16 O
ATOM 17 N3 U B 7 -2.728 19.797 55.498 1.00 27.78 N
ATOM 18 C4 U B 7 -3.464 20.939 55.697 1.00 27.06 C
ATOM 19 O4 U B 7 -2.895 22.025 55.686 1.00 27.62 O
ATOM 20 C5 U B 7 -4.862 20.722 55.916 1.00 26.11 C
ATOM 21 C6 U B 7 -5.342 19.471 55.931 1.00 26.92 C
ATOM 22 P A B 8 -5.931 16.648 60.564 1.00 28.27 P
ATOM 23 OP1 A B 8 -6.496 15.769 61.629 1.00 29.58 O
ATOM 24 OP2 A B 8 -6.221 18.104 60.577 1.00 29.78 O
ATOM 25 O5' A B 8 -4.355 16.493 60.608 1.00 27.35 O
TER
Atoms:
C4: (-4.473,21.864,52.643)
N3: (-4.645,20.546,52.292)
OP1: (-11.315,24.756,55.218)
OP2: (-8.780,25.182,54.848)
C2: (-5.829,19.855,52.236)
C1': (-8.247,19.906,52.516)
C3': (-9.330,20.186,54.573)
O5': (-9.798,22.991,54.260)
O4': (-9.273,20.871,52.358)
C5': (-10.790,22.124,53.736)
P: (-10.072,24.556,54.407)
C4': (-10.197,20.770,53.468)
C2': (-8.534,19.147,53.807)
O2': (-9.306,18.012,53.501)
N1: (-6.954,20.597,52.569)
O4: (-3.340,22.330,52.678)
O2: (-5.884,18.671,51.917)
C6: (-6.850,21.918,52.934)
C5: (-5.681,22.561,52.983)
O3': (-10.083,19.605,55.625)
N3: (-4.645,20.546,52.292)
OP1: (-11.315,24.756,55.218)
OP2: (-8.780,25.182,54.848)
C2: (-5.829,19.855,52.236)
C1': (-8.247,19.906,52.516)
C3': (-9.330,20.186,54.573)
O5': (-9.798,22.991,54.260)
O4': (-9.273,20.871,52.358)
C5': (-10.790,22.124,53.736)
P: (-10.072,24.556,54.407)
C4': (-10.197,20.770,53.468)
C2': (-8.534,19.147,53.807)
O2': (-9.306,18.012,53.501)
N1: (-6.954,20.597,52.569)
O4: (-3.340,22.330,52.678)
O2: (-5.884,18.671,51.917)
C6: (-6.850,21.918,52.934)
C5: (-5.681,22.561,52.983)
O3': (-10.083,19.605,55.625)
C4: (-3.464,20.939,55.697)
N3: (-2.728,19.797,55.498)
OP1: (-10.555,19.022,57.971)
OP2: (-9.023,21.025,57.456)
C2: (-3.190,18.505,55.506)
C1': (-5.075,17.001,55.844)
C3': (-6.093,16.831,57.958)
O5': (-8.254,18.685,57.108)
O4': (-6.483,17.039,55.670)
C5': (-8.449,17.282,57.050)
P: (-9.513,19.659,57.128)
C4': (-7.134,16.575,56.884)
C2': (-4.821,16.415,57.232)
O2': (-4.688,15.017,57.100)
N1: (-4.542,18.368,55.752)
O4: (-2.895,22.025,55.686)
O2: (-2.460,17.561,55.309)
C6: (-5.342,19.471,55.931)
C5: (-4.862,20.722,55.916)
O3': (-6.337,16.057,59.125)
N3: (-2.728,19.797,55.498)
OP1: (-10.555,19.022,57.971)
OP2: (-9.023,21.025,57.456)
C2: (-3.190,18.505,55.506)
C1': (-5.075,17.001,55.844)
C3': (-6.093,16.831,57.958)
O5': (-8.254,18.685,57.108)
O4': (-6.483,17.039,55.670)
C5': (-8.449,17.282,57.050)
P: (-9.513,19.659,57.128)
C4': (-7.134,16.575,56.884)
C2': (-4.821,16.415,57.232)
O2': (-4.688,15.017,57.100)
N1: (-4.542,18.368,55.752)
O4: (-2.895,22.025,55.686)
O2: (-2.460,17.561,55.309)
C6: (-5.342,19.471,55.931)
C5: (-4.862,20.722,55.916)
O3': (-6.337,16.057,59.125)
Image (generated by PyMOL):