Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12592:12597
Extra
PDB:
ATOM 1 O3' G A2591 -7.037 -4.033 15.767 1.00 57.08 O
ATOM 2 P C A2592 -8.053 -3.113 14.917 1.00 62.57 P
ATOM 3 OP1 C A2592 -9.383 -3.786 14.992 1.00 62.89 O
ATOM 4 OP2 C A2592 -7.442 -2.867 13.562 1.00 62.90 O
ATOM 5 O5' C A2592 -8.078 -1.768 15.776 1.00 62.33 O
ATOM 6 C5' C A2592 -8.308 -1.834 17.170 1.00 61.91 C
ATOM 7 C4' C A2592 -7.668 -0.697 17.919 1.00 61.54 C
ATOM 8 O4' C A2592 -6.237 -0.656 17.693 1.00 61.24 O
ATOM 9 C3' C A2592 -8.092 0.703 17.541 1.00 61.86 C
ATOM 10 O3' C A2592 -9.407 1.026 17.941 1.00 62.10 O
ATOM 11 C2' C A2592 -7.014 1.529 18.239 1.00 61.39 C
ATOM 12 O2' C A2592 -7.240 1.579 19.638 1.00 60.99 O
ATOM 13 C1' C A2592 -5.780 0.658 17.998 1.00 61.09 C
ATOM 14 N1 C A2592 -4.949 1.172 16.896 1.00 61.28 N
ATOM 15 C2 C A2592 -4.338 2.432 17.070 1.00 61.14 C
ATOM 16 O2 C A2592 -4.521 3.083 18.112 1.00 60.89 O
ATOM 17 N3 C A2592 -3.562 2.945 16.098 1.00 61.31 N
ATOM 18 C4 C A2592 -3.378 2.245 15.002 1.00 61.60 C
ATOM 19 N4 C A2592 -2.610 2.778 14.073 1.00 61.77 N
ATOM 20 C5 C A2592 -3.965 0.979 14.782 1.00 61.74 C
ATOM 21 C6 C A2592 -4.750 0.473 15.743 1.00 61.58 C
ATOM 22 P G A2593 -10.499 1.495 16.844 1.00 59.68 P
ATOM 23 OP1 G A2593 -11.844 1.531 17.539 1.00 59.83 O
ATOM 24 OP2 G A2593 -10.332 0.630 15.645 1.00 60.00 O
ATOM 25 O5' G A2593 -10.029 2.967 16.482 1.00 59.78 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
ATOM 2 P C A2592 -8.053 -3.113 14.917 1.00 62.57 P
ATOM 3 OP1 C A2592 -9.383 -3.786 14.992 1.00 62.89 O
ATOM 4 OP2 C A2592 -7.442 -2.867 13.562 1.00 62.90 O
ATOM 5 O5' C A2592 -8.078 -1.768 15.776 1.00 62.33 O
ATOM 6 C5' C A2592 -8.308 -1.834 17.170 1.00 61.91 C
ATOM 7 C4' C A2592 -7.668 -0.697 17.919 1.00 61.54 C
ATOM 8 O4' C A2592 -6.237 -0.656 17.693 1.00 61.24 O
ATOM 9 C3' C A2592 -8.092 0.703 17.541 1.00 61.86 C
ATOM 10 O3' C A2592 -9.407 1.026 17.941 1.00 62.10 O
ATOM 11 C2' C A2592 -7.014 1.529 18.239 1.00 61.39 C
ATOM 12 O2' C A2592 -7.240 1.579 19.638 1.00 60.99 O
ATOM 13 C1' C A2592 -5.780 0.658 17.998 1.00 61.09 C
ATOM 14 N1 C A2592 -4.949 1.172 16.896 1.00 61.28 N
ATOM 15 C2 C A2592 -4.338 2.432 17.070 1.00 61.14 C
ATOM 16 O2 C A2592 -4.521 3.083 18.112 1.00 60.89 O
ATOM 17 N3 C A2592 -3.562 2.945 16.098 1.00 61.31 N
ATOM 18 C4 C A2592 -3.378 2.245 15.002 1.00 61.60 C
ATOM 19 N4 C A2592 -2.610 2.778 14.073 1.00 61.77 N
ATOM 20 C5 C A2592 -3.965 0.979 14.782 1.00 61.74 C
ATOM 21 C6 C A2592 -4.750 0.473 15.743 1.00 61.58 C
ATOM 22 P G A2593 -10.499 1.495 16.844 1.00 59.68 P
ATOM 23 OP1 G A2593 -11.844 1.531 17.539 1.00 59.83 O
ATOM 24 OP2 G A2593 -10.332 0.630 15.645 1.00 60.00 O
ATOM 25 O5' G A2593 -10.029 2.967 16.482 1.00 59.78 O
TER
ATOM 1 O3' C B2596 -3.647 1.889 6.480 1.00 72.76 O
ATOM 2 P A B2597 -3.484 0.292 6.392 1.00 66.89 P
ATOM 3 OP1 A B2597 -2.982 -0.010 5.026 1.00 67.30 O
ATOM 4 OP2 A B2597 -4.785 -0.301 6.846 1.00 67.02 O
ATOM 5 O5' A B2597 -2.357 -0.032 7.472 1.00 66.15 O
ATOM 6 C5' A B2597 -1.557 0.997 8.011 1.00 65.80 C
ATOM 7 C4' A B2597 -1.480 0.910 9.506 1.00 65.19 C
ATOM 8 O4' A B2597 -0.918 -0.379 9.896 1.00 64.84 O
ATOM 9 C3' A B2597 -0.588 1.940 10.164 1.00 64.79 C
ATOM 10 O3' A B2597 -1.262 3.138 10.421 1.00 64.93 O
ATOM 11 C2' A B2597 -0.126 1.233 11.421 1.00 64.16 C
ATOM 12 O2' A B2597 -1.150 1.254 12.394 1.00 64.05 O
ATOM 13 C1' A B2597 0.043 -0.201 10.911 1.00 64.23 C
ATOM 14 N9 A B2597 1.385 -0.411 10.305 1.00 64.13 N
ATOM 15 C8 A B2597 1.634 -0.779 9.006 1.00 64.55 C
ATOM 16 N7 A B2597 2.898 -0.866 8.681 1.00 64.38 N
ATOM 17 C5 A B2597 3.541 -0.500 9.847 1.00 63.81 C
ATOM 18 C6 A B2597 4.907 -0.392 10.159 1.00 63.40 C
ATOM 19 N6 A B2597 5.889 -0.646 9.278 1.00 63.51 N
ATOM 20 N1 A B2597 5.230 -0.020 11.419 1.00 62.88 N
ATOM 21 C2 A B2597 4.258 0.228 12.303 1.00 62.78 C
ATOM 22 N3 A B2597 2.944 0.161 12.113 1.00 63.14 N
ATOM 23 C4 A B2597 2.636 -0.210 10.853 1.00 63.65 C
ATOM 24 P U B2598 -0.784 4.518 9.748 1.00 62.82 P
ATOM 25 OP1 U B2598 -1.883 5.474 9.946 1.00 63.09 O
ATOM 26 OP2 U B2598 -0.333 4.217 8.355 1.00 63.22 O
ATOM 27 O5' U B2598 0.458 4.956 10.647 1.00 62.21 O
TER
Atoms:
C2: (-4.338,2.432,17.070)
OP1: (-9.383,-3.786,14.992)
OP2: (-7.442,-2.867,13.562)
C4: (-3.378,2.245,15.002)
O5': (-8.078,-1.768,15.776)
C3': (-8.092,0.703,17.541)
C1': (-5.780,0.658,17.998)
O4': (-6.237,-0.656,17.693)
C5': (-8.308,-1.834,17.170)
P: (-8.053,-3.113,14.917)
O2: (-4.521,3.083,18.112)
C4': (-7.668,-0.697,17.919)
C2': (-7.014,1.529,18.239)
O2': (-7.240,1.579,19.638)
N1: (-4.949,1.172,16.896)
N3: (-3.562,2.945,16.098)
N4: (-2.610,2.778,14.073)
C6: (-4.750,0.473,15.743)
C5: (-3.965,0.979,14.782)
O3': (-9.407,1.026,17.941)
OP1: (-9.383,-3.786,14.992)
OP2: (-7.442,-2.867,13.562)
C4: (-3.378,2.245,15.002)
O5': (-8.078,-1.768,15.776)
C3': (-8.092,0.703,17.541)
C1': (-5.780,0.658,17.998)
O4': (-6.237,-0.656,17.693)
C5': (-8.308,-1.834,17.170)
P: (-8.053,-3.113,14.917)
O2: (-4.521,3.083,18.112)
C4': (-7.668,-0.697,17.919)
C2': (-7.014,1.529,18.239)
O2': (-7.240,1.579,19.638)
N1: (-4.949,1.172,16.896)
N3: (-3.562,2.945,16.098)
N4: (-2.610,2.778,14.073)
C6: (-4.750,0.473,15.743)
C5: (-3.965,0.979,14.782)
O3': (-9.407,1.026,17.941)
OP1: (-2.982,-0.010,5.026)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
OP2: (-4.785,-0.301,6.846)
C3': (-0.588,1.940,10.164)
C1': (0.043,-0.201,10.911)
C5': (-1.557,0.997,8.011)
O4': (-0.918,-0.379,9.896)
C8: (1.634,-0.779,9.006)
O2': (-1.150,1.254,12.394)
C6: (4.907,-0.392,10.159)
C5: (3.541,-0.500,9.847)
C4: (2.636,-0.210,10.853)
P: (-3.484,0.292,6.392)
C4': (-1.480,0.910,9.506)
C2': (-0.126,1.233,11.421)
C2: (4.258,0.228,12.303)
N1: (5.230,-0.020,11.419)
N3: (2.944,0.161,12.113)
N6: (5.889,-0.646,9.278)
N7: (2.898,-0.866,8.681)
N9: (1.385,-0.411,10.305)
O5': (-2.357,-0.032,7.472)
O3': (-1.262,3.138,10.421)
Image (generated by PyMOL):