Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X11:X10
Extra
PDB:
ATOM 1 O3' U A 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 2 P G A 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 3 OP1 G A 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 4 OP2 G A 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 5 O5' G A 11 -14.758 -5.514 8.131 1.00 36.73 O
ATOM 6 C5' G A 11 -13.990 -6.525 8.755 1.00 34.39 C
ATOM 7 C4' G A 11 -14.634 -7.890 8.601 1.00 33.59 C
ATOM 8 O4' G A 11 -14.433 -8.375 7.248 1.00 33.51 O
ATOM 9 C3' G A 11 -14.028 -8.949 9.510 1.00 32.84 C
ATOM 10 O3' G A 11 -14.753 -9.019 10.730 1.00 34.54 O
ATOM 11 C2' G A 11 -14.168 -10.225 8.691 1.00 33.12 C
ATOM 12 O2' G A 11 -15.468 -10.769 8.787 1.00 34.15 O
ATOM 13 C1' G A 11 -13.934 -9.703 7.278 1.00 32.36 C
ATOM 14 N9 G A 11 -12.541 -9.684 6.831 1.00 31.65 N
ATOM 15 C8 G A 11 -11.800 -8.557 6.566 1.00 30.67 C
ATOM 16 N7 G A 11 -10.592 -8.812 6.160 1.00 30.93 N
ATOM 17 C5 G A 11 -10.520 -10.197 6.146 1.00 30.79 C
ATOM 18 C6 G A 11 -9.442 -11.041 5.781 1.00 30.81 C
ATOM 19 O6 G A 11 -8.308 -10.723 5.391 1.00 30.36 O
ATOM 20 N1 G A 11 -9.780 -12.385 5.902 1.00 30.16 N
ATOM 21 C2 G A 11 -11.001 -12.854 6.324 1.00 30.63 C
ATOM 22 N2 G A 11 -11.120 -14.187 6.371 1.00 29.35 N
ATOM 23 N3 G A 11 -12.026 -12.075 6.662 1.00 32.60 N
ATOM 24 C4 G A 11 -11.714 -10.755 6.551 1.00 31.04 C
ATOM 25 P C A 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 26 OP1 C A 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 27 OP2 C A 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 28 O5' C A 12 -13.306 -10.597 12.009 1.00 32.32 O
TER
ATOM 1 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 2 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 3 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 4 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 5 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
ATOM 6 C5' U B 10 -15.788 -6.124 4.534 1.00 33.17 C
ATOM 7 C4' U B 10 -14.323 -5.938 4.207 1.00 32.98 C
ATOM 8 O4' U B 10 -14.208 -5.659 2.792 1.00 33.09 O
ATOM 9 C3' U B 10 -13.684 -4.720 4.854 1.00 33.97 C
ATOM 10 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 11 C2' U B 10 -12.478 -4.507 3.944 1.00 33.10 C
ATOM 12 O2' U B 10 -11.386 -5.341 4.281 1.00 33.06 O
ATOM 13 C1' U B 10 -13.039 -4.893 2.575 1.00 32.97 C
ATOM 14 N1 U B 10 -13.339 -3.694 1.744 1.00 32.78 N
ATOM 15 C2 U B 10 -12.440 -3.360 0.754 1.00 32.64 C
ATOM 16 O2 U B 10 -11.452 -4.030 0.512 1.00 32.10 O
ATOM 17 N3 U B 10 -12.752 -2.228 0.046 1.00 31.47 N
ATOM 18 C4 U B 10 -13.848 -1.406 0.237 1.00 32.73 C
ATOM 19 O4 U B 10 -13.997 -0.421 -0.478 1.00 31.63 O
ATOM 20 C5 U B 10 -14.735 -1.812 1.300 1.00 32.62 C
ATOM 21 C6 U B 10 -14.451 -2.916 2.004 1.00 32.70 C
ATOM 22 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 23 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 24 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 25 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
TER
ATOM 2 P G A 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 3 OP1 G A 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 4 OP2 G A 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 5 O5' G A 11 -14.758 -5.514 8.131 1.00 36.73 O
ATOM 6 C5' G A 11 -13.990 -6.525 8.755 1.00 34.39 C
ATOM 7 C4' G A 11 -14.634 -7.890 8.601 1.00 33.59 C
ATOM 8 O4' G A 11 -14.433 -8.375 7.248 1.00 33.51 O
ATOM 9 C3' G A 11 -14.028 -8.949 9.510 1.00 32.84 C
ATOM 10 O3' G A 11 -14.753 -9.019 10.730 1.00 34.54 O
ATOM 11 C2' G A 11 -14.168 -10.225 8.691 1.00 33.12 C
ATOM 12 O2' G A 11 -15.468 -10.769 8.787 1.00 34.15 O
ATOM 13 C1' G A 11 -13.934 -9.703 7.278 1.00 32.36 C
ATOM 14 N9 G A 11 -12.541 -9.684 6.831 1.00 31.65 N
ATOM 15 C8 G A 11 -11.800 -8.557 6.566 1.00 30.67 C
ATOM 16 N7 G A 11 -10.592 -8.812 6.160 1.00 30.93 N
ATOM 17 C5 G A 11 -10.520 -10.197 6.146 1.00 30.79 C
ATOM 18 C6 G A 11 -9.442 -11.041 5.781 1.00 30.81 C
ATOM 19 O6 G A 11 -8.308 -10.723 5.391 1.00 30.36 O
ATOM 20 N1 G A 11 -9.780 -12.385 5.902 1.00 30.16 N
ATOM 21 C2 G A 11 -11.001 -12.854 6.324 1.00 30.63 C
ATOM 22 N2 G A 11 -11.120 -14.187 6.371 1.00 29.35 N
ATOM 23 N3 G A 11 -12.026 -12.075 6.662 1.00 32.60 N
ATOM 24 C4 G A 11 -11.714 -10.755 6.551 1.00 31.04 C
ATOM 25 P C A 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 26 OP1 C A 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 27 OP2 C A 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 28 O5' C A 12 -13.306 -10.597 12.009 1.00 32.32 O
TER
ATOM 1 O3' G B 9 -18.409 -5.648 2.944 1.00 31.78 O
ATOM 2 P U B 10 -18.045 -4.834 4.275 1.00 32.61 P
ATOM 3 OP1 U B 10 -18.561 -5.613 5.423 1.00 31.72 O
ATOM 4 OP2 U B 10 -18.420 -3.414 4.101 1.00 32.52 O
ATOM 5 O5' U B 10 -16.454 -4.897 4.286 1.00 32.18 O
ATOM 6 C5' U B 10 -15.788 -6.124 4.534 1.00 33.17 C
ATOM 7 C4' U B 10 -14.323 -5.938 4.207 1.00 32.98 C
ATOM 8 O4' U B 10 -14.208 -5.659 2.792 1.00 33.09 O
ATOM 9 C3' U B 10 -13.684 -4.720 4.854 1.00 33.97 C
ATOM 10 O3' U B 10 -13.291 -5.004 6.185 1.00 35.47 O
ATOM 11 C2' U B 10 -12.478 -4.507 3.944 1.00 33.10 C
ATOM 12 O2' U B 10 -11.386 -5.341 4.281 1.00 33.06 O
ATOM 13 C1' U B 10 -13.039 -4.893 2.575 1.00 32.97 C
ATOM 14 N1 U B 10 -13.339 -3.694 1.744 1.00 32.78 N
ATOM 15 C2 U B 10 -12.440 -3.360 0.754 1.00 32.64 C
ATOM 16 O2 U B 10 -11.452 -4.030 0.512 1.00 32.10 O
ATOM 17 N3 U B 10 -12.752 -2.228 0.046 1.00 31.47 N
ATOM 18 C4 U B 10 -13.848 -1.406 0.237 1.00 32.73 C
ATOM 19 O4 U B 10 -13.997 -0.421 -0.478 1.00 31.63 O
ATOM 20 C5 U B 10 -14.735 -1.812 1.300 1.00 32.62 C
ATOM 21 C6 U B 10 -14.451 -2.916 2.004 1.00 32.70 C
ATOM 22 P G B 11 -14.012 -4.286 7.420 1.00 38.23 P
ATOM 23 OP1 G B 11 -15.038 -3.347 6.910 1.00 37.68 O
ATOM 24 OP2 G B 11 -12.942 -3.799 8.316 1.00 38.02 O
ATOM 25 O5' G B 11 -14.758 -5.514 8.131 1.00 36.73 O
TER
Atoms:
OP1: (-15.038,-3.347,6.910)
OP2: (-12.942,-3.799,8.316)
C3': (-14.028,-8.949,9.510)
C1': (-13.934,-9.703,7.278)
C5': (-13.990,-6.525,8.755)
O6: (-8.308,-10.723,5.391)
O4': (-14.433,-8.375,7.248)
C8: (-11.800,-8.557,6.566)
C2: (-11.001,-12.854,6.324)
C6: (-9.442,-11.041,5.781)
C5: (-10.520,-10.197,6.146)
C4: (-11.714,-10.755,6.551)
P: (-14.012,-4.286,7.420)
C4': (-14.634,-7.890,8.601)
C2': (-14.168,-10.225,8.691)
O2': (-15.468,-10.769,8.787)
N1: (-9.780,-12.385,5.902)
N2: (-11.120,-14.187,6.371)
N3: (-12.026,-12.075,6.662)
N7: (-10.592,-8.812,6.160)
N9: (-12.541,-9.684,6.831)
O5': (-14.758,-5.514,8.131)
O3': (-14.753,-9.019,10.730)
OP2: (-12.942,-3.799,8.316)
C3': (-14.028,-8.949,9.510)
C1': (-13.934,-9.703,7.278)
C5': (-13.990,-6.525,8.755)
O6: (-8.308,-10.723,5.391)
O4': (-14.433,-8.375,7.248)
C8: (-11.800,-8.557,6.566)
C2: (-11.001,-12.854,6.324)
C6: (-9.442,-11.041,5.781)
C5: (-10.520,-10.197,6.146)
C4: (-11.714,-10.755,6.551)
P: (-14.012,-4.286,7.420)
C4': (-14.634,-7.890,8.601)
C2': (-14.168,-10.225,8.691)
O2': (-15.468,-10.769,8.787)
N1: (-9.780,-12.385,5.902)
N2: (-11.120,-14.187,6.371)
N3: (-12.026,-12.075,6.662)
N7: (-10.592,-8.812,6.160)
N9: (-12.541,-9.684,6.831)
O5': (-14.758,-5.514,8.131)
O3': (-14.753,-9.019,10.730)
C4: (-13.848,-1.406,0.237)
N3: (-12.752,-2.228,0.046)
OP1: (-18.561,-5.613,5.423)
OP2: (-18.420,-3.414,4.101)
C2: (-12.440,-3.360,0.754)
C1': (-13.039,-4.893,2.575)
C3': (-13.684,-4.720,4.854)
O5': (-16.454,-4.897,4.286)
O4': (-14.208,-5.659,2.792)
C5': (-15.788,-6.124,4.534)
P: (-18.045,-4.834,4.275)
C4': (-14.323,-5.938,4.207)
C2': (-12.478,-4.507,3.944)
O2': (-11.386,-5.341,4.281)
N1: (-13.339,-3.694,1.744)
O4: (-13.997,-0.421,-0.478)
O2: (-11.452,-4.030,0.512)
C6: (-14.451,-2.916,2.004)
C5: (-14.735,-1.812,1.300)
O3': (-13.291,-5.004,6.185)
N3: (-12.752,-2.228,0.046)
OP1: (-18.561,-5.613,5.423)
OP2: (-18.420,-3.414,4.101)
C2: (-12.440,-3.360,0.754)
C1': (-13.039,-4.893,2.575)
C3': (-13.684,-4.720,4.854)
O5': (-16.454,-4.897,4.286)
O4': (-14.208,-5.659,2.792)
C5': (-15.788,-6.124,4.534)
P: (-18.045,-4.834,4.275)
C4': (-14.323,-5.938,4.207)
C2': (-12.478,-4.507,3.944)
O2': (-11.386,-5.341,4.281)
N1: (-13.339,-3.694,1.744)
O4: (-13.997,-0.421,-0.478)
O2: (-11.452,-4.030,0.512)
C6: (-14.451,-2.916,2.004)
C5: (-14.735,-1.812,1.300)
O3': (-13.291,-5.004,6.185)
Image (generated by PyMOL):