Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12370:12617
Extra
PDB:
ATOM 1 O3' U A2369 25.049 -21.163 56.213 1.00 44.16 O
ATOM 2 P G A2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 3 OP1 G A2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 4 OP2 G A2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 5 O5' G A2370 25.494 -19.978 54.065 1.00 39.59 O
ATOM 6 C5' G A2370 24.698 -18.834 54.264 1.00 39.56 C
ATOM 7 C4' G A2370 25.553 -17.623 54.440 1.00 39.41 C
ATOM 8 O4' G A2370 26.538 -17.590 53.387 1.00 39.42 O
ATOM 9 C3' G A2370 24.826 -16.288 54.401 1.00 39.41 C
ATOM 10 O3' G A2370 25.488 -15.383 55.285 1.00 39.24 O
ATOM 11 C2' G A2370 25.047 -15.824 52.965 1.00 39.50 C
ATOM 12 O2' G A2370 25.045 -14.421 52.822 1.00 39.46 O
ATOM 13 C1' G A2370 26.421 -16.404 52.640 1.00 39.44 C
ATOM 14 N9 G A2370 26.611 -16.746 51.214 1.00 39.58 N
ATOM 15 C8 G A2370 27.200 -15.964 50.238 1.00 39.60 C
ATOM 16 N7 G A2370 27.214 -16.544 49.075 1.00 39.76 N
ATOM 17 C5 G A2370 26.608 -17.790 49.281 1.00 39.85 C
ATOM 18 C6 G A2370 26.329 -18.889 48.394 1.00 40.05 C
ATOM 19 O6 G A2370 26.582 -18.966 47.192 1.00 40.18 O
ATOM 20 N1 G A2370 25.709 -19.997 48.981 1.00 40.10 N
ATOM 21 C2 G A2370 25.391 -20.012 50.296 1.00 39.98 C
ATOM 22 N2 G A2370 24.816 -21.115 50.721 1.00 40.06 N
ATOM 23 N3 G A2370 25.605 -19.019 51.134 1.00 39.80 N
ATOM 24 C4 G A2370 26.220 -17.929 50.582 1.00 39.74 C
ATOM 25 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 26 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 27 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 28 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
TER
ATOM 1 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 2 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 3 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 4 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 5 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
ATOM 6 C5' U B2617 25.936 -12.764 48.596 1.00 47.32 C
ATOM 7 C4' U B2617 27.095 -11.965 48.118 1.00 47.26 C
ATOM 8 O4' U B2617 26.649 -10.685 47.659 1.00 47.34 O
ATOM 9 C3' U B2617 28.113 -11.636 49.164 1.00 47.05 C
ATOM 10 O3' U B2617 28.977 -12.715 49.403 1.00 46.98 O
ATOM 11 C2' U B2617 28.812 -10.421 48.594 1.00 47.05 C
ATOM 12 O2' U B2617 29.831 -10.820 47.703 1.00 47.08 O
ATOM 13 C1' U B2617 27.683 -9.747 47.803 1.00 47.22 C
ATOM 14 N1 U B2617 27.139 -8.574 48.513 1.00 47.18 N
ATOM 15 C2 U B2617 27.910 -7.386 48.634 1.00 47.11 C
ATOM 16 O2 U B2617 29.046 -7.234 48.161 1.00 47.07 O
ATOM 17 N3 U B2617 27.280 -6.389 49.356 1.00 47.08 N
ATOM 18 C4 U B2617 26.014 -6.524 49.908 1.00 47.13 C
ATOM 19 O4 U B2617 25.556 -5.591 50.533 1.00 47.12 O
ATOM 20 C5 U B2617 25.292 -7.743 49.739 1.00 47.20 C
ATOM 21 C6 U B2617 25.876 -8.714 49.062 1.00 47.22 C
ATOM 22 P U B2618 29.359 -13.100 50.883 1.00 46.85 P
ATOM 23 OP1 U B2618 30.131 -14.336 50.816 1.00 46.85 O
ATOM 24 OP2 U B2618 28.150 -13.078 51.699 1.00 46.86 O
ATOM 25 O5' U B2618 30.288 -11.891 51.262 1.00 46.72 O
TER
ATOM 2 P G A2370 25.040 -21.383 54.635 1.00 39.68 P
ATOM 3 OP1 G A2370 23.628 -21.646 54.245 1.00 39.86 O
ATOM 4 OP2 G A2370 26.074 -22.414 54.326 1.00 39.70 O
ATOM 5 O5' G A2370 25.494 -19.978 54.065 1.00 39.59 O
ATOM 6 C5' G A2370 24.698 -18.834 54.264 1.00 39.56 C
ATOM 7 C4' G A2370 25.553 -17.623 54.440 1.00 39.41 C
ATOM 8 O4' G A2370 26.538 -17.590 53.387 1.00 39.42 O
ATOM 9 C3' G A2370 24.826 -16.288 54.401 1.00 39.41 C
ATOM 10 O3' G A2370 25.488 -15.383 55.285 1.00 39.24 O
ATOM 11 C2' G A2370 25.047 -15.824 52.965 1.00 39.50 C
ATOM 12 O2' G A2370 25.045 -14.421 52.822 1.00 39.46 O
ATOM 13 C1' G A2370 26.421 -16.404 52.640 1.00 39.44 C
ATOM 14 N9 G A2370 26.611 -16.746 51.214 1.00 39.58 N
ATOM 15 C8 G A2370 27.200 -15.964 50.238 1.00 39.60 C
ATOM 16 N7 G A2370 27.214 -16.544 49.075 1.00 39.76 N
ATOM 17 C5 G A2370 26.608 -17.790 49.281 1.00 39.85 C
ATOM 18 C6 G A2370 26.329 -18.889 48.394 1.00 40.05 C
ATOM 19 O6 G A2370 26.582 -18.966 47.192 1.00 40.18 O
ATOM 20 N1 G A2370 25.709 -19.997 48.981 1.00 40.10 N
ATOM 21 C2 G A2370 25.391 -20.012 50.296 1.00 39.98 C
ATOM 22 N2 G A2370 24.816 -21.115 50.721 1.00 40.06 N
ATOM 23 N3 G A2370 25.605 -19.019 51.134 1.00 39.80 N
ATOM 24 C4 G A2370 26.220 -17.929 50.582 1.00 39.74 C
ATOM 25 P G A2371 24.671 -14.418 56.289 1.00 44.19 P
ATOM 26 OP1 G A2371 23.309 -14.982 56.484 1.00 44.32 O
ATOM 27 OP2 G A2371 24.837 -13.018 55.771 1.00 44.18 O
ATOM 28 O5' G A2371 25.486 -14.597 57.627 1.00 44.04 O
TER
ATOM 1 O3' A B2616 22.849 -12.559 48.732 1.00 47.06 O
ATOM 2 P U B2617 23.796 -12.586 50.037 1.00 47.35 P
ATOM 3 OP1 U B2617 23.952 -13.988 50.425 1.00 47.33 O
ATOM 4 OP2 U B2617 23.232 -11.651 51.012 1.00 47.28 O
ATOM 5 O5' U B2617 25.166 -12.025 49.501 1.00 47.27 O
ATOM 6 C5' U B2617 25.936 -12.764 48.596 1.00 47.32 C
ATOM 7 C4' U B2617 27.095 -11.965 48.118 1.00 47.26 C
ATOM 8 O4' U B2617 26.649 -10.685 47.659 1.00 47.34 O
ATOM 9 C3' U B2617 28.113 -11.636 49.164 1.00 47.05 C
ATOM 10 O3' U B2617 28.977 -12.715 49.403 1.00 46.98 O
ATOM 11 C2' U B2617 28.812 -10.421 48.594 1.00 47.05 C
ATOM 12 O2' U B2617 29.831 -10.820 47.703 1.00 47.08 O
ATOM 13 C1' U B2617 27.683 -9.747 47.803 1.00 47.22 C
ATOM 14 N1 U B2617 27.139 -8.574 48.513 1.00 47.18 N
ATOM 15 C2 U B2617 27.910 -7.386 48.634 1.00 47.11 C
ATOM 16 O2 U B2617 29.046 -7.234 48.161 1.00 47.07 O
ATOM 17 N3 U B2617 27.280 -6.389 49.356 1.00 47.08 N
ATOM 18 C4 U B2617 26.014 -6.524 49.908 1.00 47.13 C
ATOM 19 O4 U B2617 25.556 -5.591 50.533 1.00 47.12 O
ATOM 20 C5 U B2617 25.292 -7.743 49.739 1.00 47.20 C
ATOM 21 C6 U B2617 25.876 -8.714 49.062 1.00 47.22 C
ATOM 22 P U B2618 29.359 -13.100 50.883 1.00 46.85 P
ATOM 23 OP1 U B2618 30.131 -14.336 50.816 1.00 46.85 O
ATOM 24 OP2 U B2618 28.150 -13.078 51.699 1.00 46.86 O
ATOM 25 O5' U B2618 30.288 -11.891 51.262 1.00 46.72 O
TER
Atoms:
OP1: (23.628,-21.646,54.245)
OP2: (26.074,-22.414,54.326)
C3': (24.826,-16.288,54.401)
C1': (26.421,-16.404,52.640)
C5': (24.698,-18.834,54.264)
O6: (26.582,-18.966,47.192)
O4': (26.538,-17.590,53.387)
C8: (27.200,-15.964,50.238)
C2: (25.391,-20.012,50.296)
C6: (26.329,-18.889,48.394)
C5: (26.608,-17.790,49.281)
C4: (26.220,-17.929,50.582)
P: (25.040,-21.383,54.635)
C4': (25.553,-17.623,54.440)
C2': (25.047,-15.824,52.965)
O2': (25.045,-14.421,52.822)
N1: (25.709,-19.997,48.981)
N2: (24.816,-21.115,50.721)
N3: (25.605,-19.019,51.134)
N7: (27.214,-16.544,49.075)
N9: (26.611,-16.746,51.214)
O5': (25.494,-19.978,54.065)
O3': (25.488,-15.383,55.285)
OP2: (26.074,-22.414,54.326)
C3': (24.826,-16.288,54.401)
C1': (26.421,-16.404,52.640)
C5': (24.698,-18.834,54.264)
O6: (26.582,-18.966,47.192)
O4': (26.538,-17.590,53.387)
C8: (27.200,-15.964,50.238)
C2: (25.391,-20.012,50.296)
C6: (26.329,-18.889,48.394)
C5: (26.608,-17.790,49.281)
C4: (26.220,-17.929,50.582)
P: (25.040,-21.383,54.635)
C4': (25.553,-17.623,54.440)
C2': (25.047,-15.824,52.965)
O2': (25.045,-14.421,52.822)
N1: (25.709,-19.997,48.981)
N2: (24.816,-21.115,50.721)
N3: (25.605,-19.019,51.134)
N7: (27.214,-16.544,49.075)
N9: (26.611,-16.746,51.214)
O5': (25.494,-19.978,54.065)
O3': (25.488,-15.383,55.285)
C4: (26.014,-6.524,49.908)
N3: (27.280,-6.389,49.356)
OP1: (23.952,-13.988,50.425)
OP2: (23.232,-11.651,51.012)
C2: (27.910,-7.386,48.634)
C1': (27.683,-9.747,47.803)
C3': (28.113,-11.636,49.164)
O5': (25.166,-12.025,49.501)
O4': (26.649,-10.685,47.659)
C5': (25.936,-12.764,48.596)
P: (23.796,-12.586,50.037)
C4': (27.095,-11.965,48.118)
C2': (28.812,-10.421,48.594)
O2': (29.831,-10.820,47.703)
N1: (27.139,-8.574,48.513)
O4: (25.556,-5.591,50.533)
O2: (29.046,-7.234,48.161)
C6: (25.876,-8.714,49.062)
C5: (25.292,-7.743,49.739)
O3': (28.977,-12.715,49.403)
N3: (27.280,-6.389,49.356)
OP1: (23.952,-13.988,50.425)
OP2: (23.232,-11.651,51.012)
C2: (27.910,-7.386,48.634)
C1': (27.683,-9.747,47.803)
C3': (28.113,-11.636,49.164)
O5': (25.166,-12.025,49.501)
O4': (26.649,-10.685,47.659)
C5': (25.936,-12.764,48.596)
P: (23.796,-12.586,50.037)
C4': (27.095,-11.965,48.118)
C2': (28.812,-10.421,48.594)
O2': (29.831,-10.820,47.703)
N1: (27.139,-8.574,48.513)
O4: (25.556,-5.591,50.533)
O2: (29.046,-7.234,48.161)
C6: (25.876,-8.714,49.062)
C5: (25.292,-7.743,49.739)
O3': (28.977,-12.715,49.403)
Image (generated by PyMOL):