Doublet info:
Details
Nucleotide types:
GU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11509:11508
Extra
PDB:
ATOM 1 O3' U A1508 27.939 12.008 168.402 1.00262.66 O
ATOM 2 P G A1509 29.047 11.723 169.543 1.00305.35 P
ATOM 3 OP1 G A1509 28.823 12.711 170.626 1.00305.95 O
ATOM 4 OP2 G A1509 30.371 11.691 168.870 1.00305.27 O
ATOM 5 O5' G A1509 28.668 10.261 170.058 1.00305.25 O
ATOM 6 C5' G A1509 27.527 10.043 170.883 1.00305.37 C
ATOM 7 C4' G A1509 27.152 8.579 170.938 1.00305.08 C
ATOM 8 O4' G A1509 27.254 8.006 169.607 1.00304.43 O
ATOM 9 C3' G A1509 28.032 7.694 171.823 1.00305.46 C
ATOM 10 O3' G A1509 27.591 7.663 173.180 1.00305.97 O
ATOM 11 C2' G A1509 27.975 6.332 171.131 1.00304.92 C
ATOM 12 O2' G A1509 26.802 5.622 171.512 1.00304.77 O
ATOM 13 C1' G A1509 27.840 6.729 169.660 1.00304.34 C
ATOM 14 N9 G A1509 29.136 6.781 168.942 1.00304.25 N
ATOM 15 C8 G A1509 29.511 7.829 168.140 1.00304.15 C
ATOM 16 N7 G A1509 30.663 7.707 167.555 1.00304.07 N
ATOM 17 C5 G A1509 31.097 6.473 167.987 1.00304.12 C
ATOM 18 C6 G A1509 32.303 5.808 167.673 1.00304.07 C
ATOM 19 O6 G A1509 33.226 6.194 166.945 1.00303.98 O
ATOM 20 N1 G A1509 32.372 4.581 168.309 1.00304.15 N
ATOM 21 C2 G A1509 31.396 4.072 169.126 1.00304.25 C
ATOM 22 N2 G A1509 31.662 2.880 169.656 1.00304.32 N
ATOM 23 N3 G A1509 30.265 4.680 169.436 1.00304.30 N
ATOM 24 C4 G A1509 30.172 5.877 168.830 1.00304.22 C
ATOM 25 P A A1510 28.615 7.311 174.377 1.00351.28 P
ATOM 26 OP1 A A1510 27.944 7.673 175.651 1.00351.78 O
ATOM 27 OP2 A A1510 29.910 7.956 174.048 1.00351.47 O
ATOM 28 O5' A A1510 28.755 5.725 174.271 1.00350.99 O
TER
ATOM 1 O3' C B1507 26.306 12.843 162.359 1.00206.52 O
ATOM 2 P U B1508 27.580 13.730 162.791 1.00260.53 P
ATOM 3 OP1 U B1508 27.056 15.014 163.318 1.00260.90 O
ATOM 4 OP2 U B1508 28.504 13.763 161.631 1.00260.20 O
ATOM 5 O5' U B1508 28.229 12.879 163.978 1.00260.99 O
ATOM 6 C5' U B1508 27.949 13.181 165.344 1.00261.57 C
ATOM 7 C4' U B1508 27.245 12.034 166.027 1.00261.54 C
ATOM 8 O4' U B1508 27.009 10.974 165.057 1.00260.91 O
ATOM 9 C3' U B1508 28.014 11.338 167.148 1.00262.02 C
ATOM 10 O3' U B1508 27.939 12.008 168.402 1.00262.66 O
ATOM 11 C2' U B1508 27.389 9.950 167.152 1.00261.68 C
ATOM 12 O2' U B1508 26.105 9.974 167.760 1.00261.73 O
ATOM 13 C1' U B1508 27.208 9.712 165.657 1.00260.98 C
ATOM 14 N1 U B1508 28.411 9.082 165.045 1.00260.80 N
ATOM 15 C2 U B1508 28.531 7.704 165.117 1.00260.62 C
ATOM 16 O2 U B1508 27.695 6.992 165.655 1.00260.59 O
ATOM 17 N3 U B1508 29.669 7.186 164.538 1.00260.47 N
ATOM 18 C4 U B1508 30.680 7.882 163.906 1.00260.49 C
ATOM 19 O4 U B1508 31.639 7.265 163.435 1.00260.34 O
ATOM 20 C5 U B1508 30.490 9.301 163.870 1.00260.68 C
ATOM 21 C6 U B1508 29.393 9.831 164.424 1.00260.83 C
ATOM 22 P G B1509 29.047 11.723 169.543 1.00305.35 P
ATOM 23 OP1 G B1509 28.823 12.711 170.626 1.00305.95 O
ATOM 24 OP2 G B1509 30.371 11.691 168.870 1.00305.27 O
ATOM 25 O5' G B1509 28.668 10.261 170.058 1.00305.25 O
TER
ATOM 2 P G A1509 29.047 11.723 169.543 1.00305.35 P
ATOM 3 OP1 G A1509 28.823 12.711 170.626 1.00305.95 O
ATOM 4 OP2 G A1509 30.371 11.691 168.870 1.00305.27 O
ATOM 5 O5' G A1509 28.668 10.261 170.058 1.00305.25 O
ATOM 6 C5' G A1509 27.527 10.043 170.883 1.00305.37 C
ATOM 7 C4' G A1509 27.152 8.579 170.938 1.00305.08 C
ATOM 8 O4' G A1509 27.254 8.006 169.607 1.00304.43 O
ATOM 9 C3' G A1509 28.032 7.694 171.823 1.00305.46 C
ATOM 10 O3' G A1509 27.591 7.663 173.180 1.00305.97 O
ATOM 11 C2' G A1509 27.975 6.332 171.131 1.00304.92 C
ATOM 12 O2' G A1509 26.802 5.622 171.512 1.00304.77 O
ATOM 13 C1' G A1509 27.840 6.729 169.660 1.00304.34 C
ATOM 14 N9 G A1509 29.136 6.781 168.942 1.00304.25 N
ATOM 15 C8 G A1509 29.511 7.829 168.140 1.00304.15 C
ATOM 16 N7 G A1509 30.663 7.707 167.555 1.00304.07 N
ATOM 17 C5 G A1509 31.097 6.473 167.987 1.00304.12 C
ATOM 18 C6 G A1509 32.303 5.808 167.673 1.00304.07 C
ATOM 19 O6 G A1509 33.226 6.194 166.945 1.00303.98 O
ATOM 20 N1 G A1509 32.372 4.581 168.309 1.00304.15 N
ATOM 21 C2 G A1509 31.396 4.072 169.126 1.00304.25 C
ATOM 22 N2 G A1509 31.662 2.880 169.656 1.00304.32 N
ATOM 23 N3 G A1509 30.265 4.680 169.436 1.00304.30 N
ATOM 24 C4 G A1509 30.172 5.877 168.830 1.00304.22 C
ATOM 25 P A A1510 28.615 7.311 174.377 1.00351.28 P
ATOM 26 OP1 A A1510 27.944 7.673 175.651 1.00351.78 O
ATOM 27 OP2 A A1510 29.910 7.956 174.048 1.00351.47 O
ATOM 28 O5' A A1510 28.755 5.725 174.271 1.00350.99 O
TER
ATOM 1 O3' C B1507 26.306 12.843 162.359 1.00206.52 O
ATOM 2 P U B1508 27.580 13.730 162.791 1.00260.53 P
ATOM 3 OP1 U B1508 27.056 15.014 163.318 1.00260.90 O
ATOM 4 OP2 U B1508 28.504 13.763 161.631 1.00260.20 O
ATOM 5 O5' U B1508 28.229 12.879 163.978 1.00260.99 O
ATOM 6 C5' U B1508 27.949 13.181 165.344 1.00261.57 C
ATOM 7 C4' U B1508 27.245 12.034 166.027 1.00261.54 C
ATOM 8 O4' U B1508 27.009 10.974 165.057 1.00260.91 O
ATOM 9 C3' U B1508 28.014 11.338 167.148 1.00262.02 C
ATOM 10 O3' U B1508 27.939 12.008 168.402 1.00262.66 O
ATOM 11 C2' U B1508 27.389 9.950 167.152 1.00261.68 C
ATOM 12 O2' U B1508 26.105 9.974 167.760 1.00261.73 O
ATOM 13 C1' U B1508 27.208 9.712 165.657 1.00260.98 C
ATOM 14 N1 U B1508 28.411 9.082 165.045 1.00260.80 N
ATOM 15 C2 U B1508 28.531 7.704 165.117 1.00260.62 C
ATOM 16 O2 U B1508 27.695 6.992 165.655 1.00260.59 O
ATOM 17 N3 U B1508 29.669 7.186 164.538 1.00260.47 N
ATOM 18 C4 U B1508 30.680 7.882 163.906 1.00260.49 C
ATOM 19 O4 U B1508 31.639 7.265 163.435 1.00260.34 O
ATOM 20 C5 U B1508 30.490 9.301 163.870 1.00260.68 C
ATOM 21 C6 U B1508 29.393 9.831 164.424 1.00260.83 C
ATOM 22 P G B1509 29.047 11.723 169.543 1.00305.35 P
ATOM 23 OP1 G B1509 28.823 12.711 170.626 1.00305.95 O
ATOM 24 OP2 G B1509 30.371 11.691 168.870 1.00305.27 O
ATOM 25 O5' G B1509 28.668 10.261 170.058 1.00305.25 O
TER
Atoms:
OP1: (28.823,12.711,170.626)
OP2: (30.371,11.691,168.870)
C3': (28.032,7.694,171.823)
C1': (27.840,6.729,169.660)
C5': (27.527,10.043,170.883)
O6: (33.226,6.194,166.945)
O4': (27.254,8.006,169.607)
C8: (29.511,7.829,168.140)
C2: (31.396,4.072,169.126)
C6: (32.303,5.808,167.673)
C5: (31.097,6.473,167.987)
C4: (30.172,5.877,168.830)
P: (29.047,11.723,169.543)
C4': (27.152,8.579,170.938)
C2': (27.975,6.332,171.131)
O2': (26.802,5.622,171.512)
N1: (32.372,4.581,168.309)
N2: (31.662,2.880,169.656)
N3: (30.265,4.680,169.436)
N7: (30.663,7.707,167.555)
N9: (29.136,6.781,168.942)
O5': (28.668,10.261,170.058)
O3': (27.591,7.663,173.180)
OP2: (30.371,11.691,168.870)
C3': (28.032,7.694,171.823)
C1': (27.840,6.729,169.660)
C5': (27.527,10.043,170.883)
O6: (33.226,6.194,166.945)
O4': (27.254,8.006,169.607)
C8: (29.511,7.829,168.140)
C2: (31.396,4.072,169.126)
C6: (32.303,5.808,167.673)
C5: (31.097,6.473,167.987)
C4: (30.172,5.877,168.830)
P: (29.047,11.723,169.543)
C4': (27.152,8.579,170.938)
C2': (27.975,6.332,171.131)
O2': (26.802,5.622,171.512)
N1: (32.372,4.581,168.309)
N2: (31.662,2.880,169.656)
N3: (30.265,4.680,169.436)
N7: (30.663,7.707,167.555)
N9: (29.136,6.781,168.942)
O5': (28.668,10.261,170.058)
O3': (27.591,7.663,173.180)
C4: (30.680,7.882,163.906)
N3: (29.669,7.186,164.538)
OP1: (27.056,15.014,163.318)
OP2: (28.504,13.763,161.631)
C2: (28.531,7.704,165.117)
C1': (27.208,9.712,165.657)
C3': (28.014,11.338,167.148)
O5': (28.229,12.879,163.978)
O4': (27.009,10.974,165.057)
C5': (27.949,13.181,165.344)
P: (27.580,13.730,162.791)
C4': (27.245,12.034,166.027)
C2': (27.389,9.950,167.152)
O2': (26.105,9.974,167.760)
N1: (28.411,9.082,165.045)
O4: (31.639,7.265,163.435)
O2: (27.695,6.992,165.655)
C6: (29.393,9.831,164.424)
C5: (30.490,9.301,163.870)
O3': (27.939,12.008,168.402)
N3: (29.669,7.186,164.538)
OP1: (27.056,15.014,163.318)
OP2: (28.504,13.763,161.631)
C2: (28.531,7.704,165.117)
C1': (27.208,9.712,165.657)
C3': (28.014,11.338,167.148)
O5': (28.229,12.879,163.978)
O4': (27.009,10.974,165.057)
C5': (27.949,13.181,165.344)
P: (27.580,13.730,162.791)
C4': (27.245,12.034,166.027)
C2': (27.389,9.950,167.152)
O2': (26.105,9.974,167.760)
N1: (28.411,9.082,165.045)
O4: (31.639,7.265,163.435)
O2: (27.695,6.992,165.655)
C6: (29.393,9.831,164.424)
C5: (30.490,9.301,163.870)
O3': (27.939,12.008,168.402)
Image (generated by PyMOL):